Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0002266

Physical Location & Seq

Genomic Coordinates Reverse (-)

23093055 .. 23100712

Gene Structure 7658 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00183920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGCTTGGTAATGGCGCTACGTCTTGCTTAAGCGATAGGAAAGGCAAATGGTGGATTATTGCTCGCTATGAGGATAGTGTGCCGGTTGAAATCTTCTCACAACATAATTGGGTCAAAGGTGATTTGACTAAAAGGTTTCAAAAAACATTCAATATCAATATCCTCGCCATAGATTGGTTACGTCATGAGACTATAATAAGAGTTCCGTTTTTTGATGAGCCCTACAATGGTGACTTGCCGGATAGTGAAGTAATGTATACTGATGGTGTTGTTTCTCTAACATTTGTCAAGAGCATGTTTGTGGTCAACAAGCAGGTTACGGCTACGGAGGAGTTCTCTTGTCACCTAGAAGAGGTCTTGAAGCAGCTTGGAGAAGGCGATGCTGGCCTTTTTGAGTTGCCCTATTTAACTAGCGGTAATGGGACGACTTATGTCATACCAGTTTGGCTCTATGGAGAAGGGACATCCCTCCATTTAGAGGCAGGTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

163

Amino Acids

18.46

Weight (kDa)

4.82

Isoelectric Point (pI)

46.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002266)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g18500 FvH4_2g18510 FvH4_2g18510 FvH4_2g18510 FvH4_2g18510 FvH4_2g18510
malus_domestica	MD05G1170700.v1.1
prunus_persica	Prupe.8G198000_v2.0.a1 Prupe.8G198100_v2.0.a1 Prupe.8G198200_v2.0.a1 Prupe.8G198200_v2.0.a1 Prupe.8G198300_v2.0.a1 Prupe.8G198400_v2.0.a1
pyrus_communis	pycom05g15790
rosa_chinensis	RchiOBHm_Chr6g0284021 RchiOBHm_Chr6g0284061
rosa_laevigata	RLG00000012773 RLG00000012776
rosa_multiflora	Rmu_sc0003102.1_g000003 Rmu_sc0015649.1_g000013 Rmu_ssc0000442.1_g000043
rosa_roxburghii	Rroxscaffold_7G00183920 Rroxscaffold_7G00184970
rosa_rugosa	Rorug06G0159400 Rorug06G0159500 Rorug06G0159600 Rorug06G0160100
rosa_samantha	Rh6AG272700 Rh6AG272800 Rh6AG272900 Rh6AG273200 Rh6BG273300 Rh6BG273700 Rh6BG273800 Rh6CG274500 Rh6CG274600 Rh6CG274700 Rh6CG275300 Rh6CG283300 Rh6DG267700 Rh6DG268200
rosa_wichuraiana	Rw6G023480 Rw6G023510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	304, 473
AccB7I	CCANNNNNTGG	1 cut(s)	174
AccI	GTMKAC	1 cut(s)	257
AciI	CCGC	1 cut(s)	414
AfiI	CCNNNNNNNGG	4 cut(s)	174, 227, 352, 478
AflII	CTTAAG	1 cut(s)	28
AgsI	TTSAA	4 cut(s)	89, 140, 151, 361
AluBI	AGCT	1 cut(s)	367
AluI	AGCT	1 cut(s)	367
Alw26I	GTCTC	1 cut(s)	182
AoxI	GGCC	1 cut(s)	385
ApeKI	GCWGC	1 cut(s)	364
AspLEI	GCGC	1 cut(s)	17
AsuHPI	GGTGA	3 cut(s)	131, 242, 335
BanII	GRGCYC	1 cut(s)	222
BbvI	GCAGC	1 cut(s)	376
BccI	CCATC	1 cut(s)	257
BceAI	ACGGC	1 cut(s)	336
BcoDI	GTCTC	1 cut(s)	182
BfaI	CTAG	2 cut(s)	347, 411
BfoI	RGCGCY	1 cut(s)	18
BfrI	CTTAAG	1 cut(s)	28
BfuAI	ACCTGC	2 cut(s)	304, 473
BisI	GCNGC	1 cut(s)	365
BlsI	GCNGC	1 cut(s)	366
BmsI	GCATC	1 cut(s)	370
BoxI	GACNNNNGTC	1 cut(s)	431
BplI	GAGNNNNNCTC	2 cut(s)	320, 352
Bsc4I	CCNNNNNNNGG	4 cut(s)	174, 227, 352, 478
Bse118I	RCCGGY	1 cut(s)	82
Bse1I	ACTGG	1 cut(s)	440
BseGI	GGATG	1 cut(s)	464
BseLI	CCNNNNNNNGG	4 cut(s)	174, 227, 352, 478
BseNI	ACTGG	1 cut(s)	440
BseRI	GAGGAG	1 cut(s)	344
BseXI	GCAGC	1 cut(s)	376
BshFI	GGCC	1 cut(s)	387
BsiSI	CCGG	2 cut(s)	83, 239
BslFI	GGGAC	2 cut(s)	436, 475
BslI	CCNNNNNNNGG	4 cut(s)	174, 227, 352, 478
BsmAI	GTCTC	1 cut(s)	182
BsmFI	GGGAC	2 cut(s)	436, 475
BsnI	GGCC	1 cut(s)	387
Bsp1286I	GDGCHC	1 cut(s)	222
BspACI	CCGC	1 cut(s)	414
BspANI	GGCC	1 cut(s)	387
BspHI	TCATGA	1 cut(s)	184
BspMI	ACCTGC	2 cut(s)	304, 473
BspTI	CTTAAG	1 cut(s)	28
BsrFI	RCCGGY	1 cut(s)	82
BsrI	ACTGG	1 cut(s)	440
BssAI	RCCGGY	1 cut(s)	82
BssNAI	GTATAC	1 cut(s)	258
Bst1107I	GTATAC	1 cut(s)	258
Bst6I	CTCTTC	1 cut(s)	345
BstAFI	CTTAAG	1 cut(s)	28
BstC8I	GCNNGC	2 cut(s)	64, 385
BstENI	CCTNNNNNAGG	1 cut(s)	350
BstF5I	GGATG	1 cut(s)	464
BstH2I	RGCGCY	1 cut(s)	18
BstHHI	GCGC	1 cut(s)	17
BstMAI	GTCTC	1 cut(s)	182
BstMWI	GCNNNNNNNGC	1 cut(s)	384
BstNSI	RCATGY	1 cut(s)	298
BstPAI	GACNNNNGTC	1 cut(s)	431
BstV1I	GCAGC	1 cut(s)	376
BstZ17I	GTATAC	1 cut(s)	258
BsuRI	GGCC	1 cut(s)	387
BtgZI	GCGATG	1 cut(s)	393
BtsCI	GGATG	1 cut(s)	464
BveI	ACCTGC	2 cut(s)	304, 473
Cac8I	GCNNGC	2 cut(s)	64, 385
CciI	TCATGA	1 cut(s)	184
CfoI	GCGC	1 cut(s)	17
Cfr10I	RCCGGY	1 cut(s)	82
CviAII	CATG	2 cut(s)	185, 295
CviJI	RGCY	5 cut(s)	220, 323, 367, 387, 448
CviKI_1	RGCY	5 cut(s)	220, 323, 367, 387, 448
Eam1104I	CTCTTC	1 cut(s)	345
EarI	CTCTTC	1 cut(s)	345
Eco24I	GRGCYC	1 cut(s)	222
EcoNI	CCTNNNNNAGG	1 cut(s)	350
EcoT38I	GRGCYC	1 cut(s)	222
FaeI	CATG	2 cut(s)	188, 298
FaqI	GGGAC	2 cut(s)	436, 475
FatI	CATG	2 cut(s)	184, 294
FblI	GTMKAC	1 cut(s)	257
Fnu4HI	GCNGC	1 cut(s)	365
FokI	GGATG	1 cut(s)	451
FriOI	GRGCYC	1 cut(s)	222
Fsp4HI	GCNGC	1 cut(s)	365
FspBI	CTAG	2 cut(s)	347, 411
GlaI	GCGC	1 cut(s)	16
GluI	GCNGC	1 cut(s)	365
HaeII	RGCGCY	1 cut(s)	18
HaeIII	GGCC	1 cut(s)	387
HapII	CCGG	2 cut(s)	83, 239
HhaI	GCGC	1 cut(s)	17
Hin1II	CATG	2 cut(s)	188, 298
Hin6I	GCGC	1 cut(s)	15
HinP1I	GCGC	1 cut(s)	15
HincII	GTYRAC	1 cut(s)	307
HindII	GTYRAC	1 cut(s)	307
HpaII	CCGG	2 cut(s)	83, 239
HphI	GGTGA	3 cut(s)	131, 242, 335
Hpy166II	GTNNAC	2 cut(s)	258, 307
Hpy188III	TCNNGA	3 cut(s)	185, 289, 358
Hpy8I	GTNNAC	2 cut(s)	258, 307
HpyAV	CCTTC	2 cut(s)	368, 452
HpyCH4IV	ACGT	2 cut(s)	20, 181
HpyF10VI	GCNNNNNNNGC	1 cut(s)	384
HpySE526I	ACGT	2 cut(s)	20, 181
Hsp92II	CATG	2 cut(s)	188, 298
HspAI	GCGC	1 cut(s)	15
LpnPI	CCDG	6 cut(s)	96, 252, 299, 369, 453, 468
Lsp1109I	GCAGC	1 cut(s)	376
LweI	GCATC	1 cut(s)	370
MaeI	CTAG	2 cut(s)	347, 411
MaeII	ACGT	2 cut(s)	20, 181
MaeIII	GTNAC	4 cut(s)	177, 230, 316, 341
MboII	GAAGA	2 cut(s)	85, 362
MhlI	GDGCHC	1 cut(s)	222
MluCI	AATT	2 cut(s)	106, 487
MnlI	CCTC	6 cut(s)	64, 173, 322, 346, 472, 479
MseI	TTAA	3 cut(s)	29, 407, 490
MslI	CAYNNNNRTG	1 cut(s)	299
MspCI	CTTAAG	1 cut(s)	28
MspI	CCGG	2 cut(s)	83, 239
MwoI	GCNNNNNNNGC	1 cut(s)	384
NlaIII	CATG	2 cut(s)	188, 298
NmuCI	GTSAC	2 cut(s)	230, 341
NspI	RCATGY	1 cut(s)	298
PagI	TCATGA	1 cut(s)	184
PflMI	CCANNNNNTGG	1 cut(s)	174
PkrI	GCNGC	1 cut(s)	366
PshAI	GACNNNNGTC	1 cut(s)	431
RseI	CAYNNNNRTG	1 cut(s)	299
SaqAI	TTAA	3 cut(s)	29, 407, 490
SatI	GCNGC	1 cut(s)	365
SduI	GDGCHC	1 cut(s)	222
SetI	ASST	9 cut(s)	23, 121, 137, 184, 318, 348, 357, 369, 487
SfaNI	GCATC	1 cut(s)	370
SmiMI	CAYNNNNRTG	1 cut(s)	299
SmlI	CTYRAG	1 cut(s)	28
SmoI	CTYRAG	1 cut(s)	28
Sse9I	AATT	2 cut(s)	106, 487
SsiI	CCGC	1 cut(s)	414
SspMI	CTAG	2 cut(s)	347, 411
TaiI	ACGT	2 cut(s)	23, 184
TasI	AATT	2 cut(s)	106, 487
Tru1I	TTAA	3 cut(s)	29, 407, 490
Tru9I	TTAA	3 cut(s)	29, 407, 490
TseFI	GTSAC	2 cut(s)	230, 341
TseI	GCWGC	1 cut(s)	364
Tsp45I	GTSAC	2 cut(s)	230, 341
TspGWI	ACGGA	2 cut(s)	195, 341
Van91I	CCANNNNNTGG	1 cut(s)	174
Vha464I	CTTAAG	1 cut(s)	28
XagI	CCTNNNNNAGG	1 cut(s)	350
XceI	RCATGY	1 cut(s)	298
XmiI	GTMKAC	1 cut(s)	257
XspI	CTAG	2 cut(s)	347, 411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.