Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0002266

Physical Location & Seq

Genomic Coordinates Forward (+)

45073172 .. 45094243

Gene Structure 21072 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG274700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGAGAAGGAAAAGCATACCAAAGAAAGGACTGCTCCAAGTGCTGAGCTCAAGGAGGATCTCCAGAGGAACGAAAACCATAAGCAGAACAAAGATGGTAACATGCTAACCAGGGAGATGATCAAAGAACTAAAAAAGCAGGTGATGAGGTGGTCCCAAGAAAAGTTTCAGGAGGAAGGTGAAGACCGGGACATGGATGGAGAGGGCTCTAATGCATCAAGGGAACAAGTGGAGGGTGGGGATGCTCTGTCTTTCTGGACGATTTGCAATCACTGCAAAATGAACTTTGAGTTTCCGTCGCCGGCAATACTTTGTTGGGGAGGAAGACCTCCTGAAGTGGTAGTGGTGCTAATGGGCTGCATCTCCCTTTCCTATCTACAAGCTTGGGCTTTGCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

132

Amino Acids

15.23

Weight (kDa)

5.28

Isoelectric Point (pI)

51.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002266)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g18500 FvH4_2g18510 FvH4_2g18510 FvH4_2g18510 FvH4_2g18510 FvH4_2g18510
malus_domestica	MD05G1170700.v1.1
prunus_persica	Prupe.8G198000_v2.0.a1 Prupe.8G198100_v2.0.a1 Prupe.8G198200_v2.0.a1 Prupe.8G198200_v2.0.a1 Prupe.8G198300_v2.0.a1 Prupe.8G198400_v2.0.a1
pyrus_communis	pycom05g15790
rosa_chinensis	RchiOBHm_Chr6g0284021 RchiOBHm_Chr6g0284061
rosa_laevigata	RLG00000012773 RLG00000012776
rosa_multiflora	Rmu_sc0003102.1_g000003 Rmu_sc0015649.1_g000013 Rmu_ssc0000442.1_g000043
rosa_roxburghii	Rroxscaffold_7G00183920 Rroxscaffold_7G00184970
rosa_rugosa	Rorug06G0159400 Rorug06G0159500 Rorug06G0159600 Rorug06G0160100
rosa_samantha	Rh6AG272700 Rh6AG272800 Rh6AG272900 Rh6AG273200 Rh6BG273300 Rh6BG273700 Rh6BG273800 Rh6CG274500 Rh6CG274600 Rh6CG274700 Rh6CG275300 Rh6CG283300 Rh6DG267700 Rh6DG268200
rosa_wichuraiana	Rw6G023480 Rw6G023510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	130
Acc36I	ACCTGC	1 cut(s)	130
AclWI	GGATC	1 cut(s)	66
AcuI	CTGAAG	1 cut(s)	354
AfiI	CCNNNNNNNGG	2 cut(s)	27, 193
AjnI	CCWGG	1 cut(s)	110
AjuI	GAANNNNNNNTTGG	2 cut(s)	150, 182
AluBI	AGCT	2 cut(s)	49, 383
AluI	AGCT	2 cut(s)	49, 383
Alw21I	GWGCWC	1 cut(s)	51
AlwI	GGATC	1 cut(s)	66
ApeKI	GCWGC	1 cut(s)	357
Asp700I	GAANNNNTTC	1 cut(s)	165
AspS9I	GGNCC	1 cut(s)	153
AsuC2I	CCSGG	1 cut(s)	188
AsuHPI	GGTGA	2 cut(s)	154, 191
AvaII	GGWCC	1 cut(s)	153
BanII	GRGCYC	2 cut(s)	51, 209
BbsI	GAAGAC	2 cut(s)	189, 331
Bbv12I	GWGCWC	1 cut(s)	51
BbvI	GCAGC	1 cut(s)	344
BccI	CCATC	2 cut(s)	89, 191
BciT130I	CCWGG	1 cut(s)	112
BclI	TGATCA	1 cut(s)	120
BcnI	CCSGG	1 cut(s)	188
BfuAI	ACCTGC	1 cut(s)	130
BisI	GCNGC	1 cut(s)	358
BlpI	GCTNAGC	1 cut(s)	45
BlsI	GCNGC	1 cut(s)	359
Bme1390I	CCNGG	2 cut(s)	112, 188
Bme18I	GGWCC	1 cut(s)	153
BmgT120I	GGNCC	1 cut(s)	153
BmiI	GGNNCC	1 cut(s)	155
BmrFI	CCNGG	2 cut(s)	112, 188
BmsI	GCATC	3 cut(s)	224, 232, 369
BpiI	GAAGAC	2 cut(s)	189, 331
BpmI	CTGGAG	1 cut(s)	47
Bpu1102I	GCTNAGC	1 cut(s)	45
BpuEI	CTTGAG	1 cut(s)	35
BpuMI	CCSGG	1 cut(s)	188
BsaJI	CCNNGG	1 cut(s)	111
Bsc4I	CCNNNNNNNGG	2 cut(s)	27, 193
Bse118I	RCCGGY	1 cut(s)	301
BseBI	CCWGG	1 cut(s)	112
BseDI	CCNNGG	1 cut(s)	111
BseGI	GGATG	2 cut(s)	202, 247
BseLI	CCNNNNNNNGG	2 cut(s)	27, 193
BseMII	CTCAG	1 cut(s)	36
BseXI	GCAGC	1 cut(s)	344
BsiHKAI	GWGCWC	1 cut(s)	51
BsiSI	CCGG	2 cut(s)	187, 302
BslFI	GGGAC	2 cut(s)	139, 203
BslI	CCNNNNNNNGG	2 cut(s)	27, 193
BsmFI	GGGAC	2 cut(s)	139, 203
Bsp1286I	GDGCHC	2 cut(s)	51, 209
Bsp143I	GATC	2 cut(s)	58, 120
Bsp1720I	GCTNAGC	1 cut(s)	45
BspCNI	CTCAG	1 cut(s)	37
BspLI	GGNNCC	1 cut(s)	155
BspMI	ACCTGC	1 cut(s)	130
BspPI	GGATC	1 cut(s)	66
BsrFI	RCCGGY	1 cut(s)	301
BssAI	RCCGGY	1 cut(s)	301
BssECI	CCNNGG	1 cut(s)	111
BssMI	GATC	2 cut(s)	58, 120
Bst2UI	CCWGG	1 cut(s)	112
BstAPI	GCANNNNNTGC	1 cut(s)	273
BstC8I	GCNNGC	1 cut(s)	303
BstDEI	CTNAG	1 cut(s)	45
BstF5I	GGATG	2 cut(s)	202, 247
BstKTI	GATC	2 cut(s)	61, 123
BstMBI	GATC	2 cut(s)	58, 120
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 273
BstNI	CCWGG	1 cut(s)	112
BstNSI	RCATGY	1 cut(s)	106
BstSCI	CCNGG	2 cut(s)	110, 186
BstV1I	GCAGC	1 cut(s)	344
BstV2I	GAAGAC	2 cut(s)	189, 331
BstX2I	RGATCY	1 cut(s)	58
BstYI	RGATCY	1 cut(s)	58
BtsCI	GGATG	2 cut(s)	202, 247
BtsI	GCAGTG	1 cut(s)	271
BtsIMutI	CAGTG	1 cut(s)	271
BveI	ACCTGC	1 cut(s)	130
Cac8I	GCNNGC	1 cut(s)	303
Cfr10I	RCCGGY	1 cut(s)	301
Cfr13I	GGNCC	1 cut(s)	153
CviAII	CATG	2 cut(s)	103, 193
CviJI	RGCY	5 cut(s)	49, 207, 357, 383, 389
CviKI_1	RGCY	5 cut(s)	49, 207, 357, 383, 389
DdeI	CTNAG	1 cut(s)	45
DpnI	GATC	2 cut(s)	60, 122
DpnII	GATC	2 cut(s)	58, 120
Ecl136II	GAGCTC	1 cut(s)	49
Eco24I	GRGCYC	2 cut(s)	51, 209
Eco47I	GGWCC	1 cut(s)	153
Eco53kI	GAGCTC	1 cut(s)	49
Eco57I	CTGAAG	1 cut(s)	354
EcoICRI	GAGCTC	1 cut(s)	49
EcoRII	CCWGG	1 cut(s)	110
EcoT22I	ATGCAT	1 cut(s)	217
EcoT38I	GRGCYC	2 cut(s)	51, 209
FaeI	CATG	2 cut(s)	106, 196
FaiI	YATR	4 cut(s)	18, 81, 104, 194
FaqI	GGGAC	2 cut(s)	139, 203
FatI	CATG	2 cut(s)	102, 192
FbaI	TGATCA	1 cut(s)	120
Fnu4HI	GCNGC	1 cut(s)	358
FokI	GGATG	2 cut(s)	209, 254
FriOI	GRGCYC	2 cut(s)	51, 209
Fsp4HI	GCNGC	1 cut(s)	358
GluI	GCNGC	1 cut(s)	358
GsuI	CTGGAG	1 cut(s)	47
HapII	CCGG	2 cut(s)	187, 302
Hin1II	CATG	2 cut(s)	106, 196
HindIII	AAGCTT	1 cut(s)	381
HpaII	CCGG	2 cut(s)	187, 302
HphI	GGTGA	2 cut(s)	154, 191
Hpy188III	TCNNGA	4 cut(s)	64, 170, 256, 332
Hpy99I	CGWCG	1 cut(s)	301
HpyAV	CCTTC	1 cut(s)	170
HpyCH4V	TGCA	4 cut(s)	215, 267, 276, 360
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 273
HpyF3I	CTNAG	1 cut(s)	45
Hsp92II	CATG	2 cut(s)	106, 196
KroI	GCCGGC	1 cut(s)	301
KroNI	GCCGGC	1 cut(s)	303
Ksp22I	TGATCA	1 cut(s)	120
Kzo9I	GATC	2 cut(s)	58, 120
LmnI	GCTCC	1 cut(s)	40
LpnPI	CCDG	9 cut(s)	77, 97, 124, 125, 155, 200, 241, 315, 345
Lsp1109I	GCAGC	1 cut(s)	344
LweI	GCATC	3 cut(s)	224, 232, 369
MaeIII	GTNAC	1 cut(s)	98
MalI	GATC	2 cut(s)	60, 122
MboI	GATC	2 cut(s)	58, 120
MboII	GAAGA	2 cut(s)	194, 336
MflI	RGATCY	1 cut(s)	58
MhlI	GDGCHC	2 cut(s)	51, 209
MnlI	CCTC	8 cut(s)	49, 60, 141, 166, 196, 226, 314, 339
Mph1103I	ATGCAT	1 cut(s)	217
MroNI	GCCGGC	1 cut(s)	301
MroXI	GAANNNNTTC	1 cut(s)	165
MspI	CCGG	2 cut(s)	187, 302
MspR9I	CCNGG	2 cut(s)	112, 188
MvaI	CCWGG	1 cut(s)	112
MwoI	GCNNNNNNNGC	2 cut(s)	41, 273
NaeI	GCCGGC	1 cut(s)	303
NciI	CCSGG	1 cut(s)	188
NdeII	GATC	2 cut(s)	58, 120
NgoMIV	GCCGGC	1 cut(s)	301
NlaIII	CATG	2 cut(s)	106, 196
NlaIV	GGNNCC	1 cut(s)	155
NsiI	ATGCAT	1 cut(s)	217
NspI	RCATGY	1 cut(s)	106
PaqCI	CACCTGC	1 cut(s)	130
PdiI	GCCGGC	1 cut(s)	303
PdmI	GAANNNNTTC	1 cut(s)	165
PkrI	GCNGC	1 cut(s)	359
Psp124BI	GAGCTC	1 cut(s)	51
Psp6I	CCWGG	1 cut(s)	110
PspGI	CCWGG	1 cut(s)	110
PspN4I	GGNNCC	1 cut(s)	155
PspPI	GGNCC	1 cut(s)	153
PsuI	RGATCY	1 cut(s)	58
SacI	GAGCTC	1 cut(s)	51
SatI	GCNGC	1 cut(s)	358
Sau3AI	GATC	2 cut(s)	58, 120
Sau96I	GGNCC	1 cut(s)	153
ScrFI	CCNGG	2 cut(s)	112, 188
SduI	GDGCHC	2 cut(s)	51, 209
SetI	ASST	6 cut(s)	51, 144, 152, 181, 331, 385
SfaNI	GCATC	3 cut(s)	224, 232, 369
SinI	GGWCC	1 cut(s)	153
SmlI	CTYRAG	1 cut(s)	50
SmoI	CTYRAG	1 cut(s)	50
SstI	GAGCTC	1 cut(s)	51
StyD4I	CCNGG	2 cut(s)	110, 186
TscAI	CASTG	1 cut(s)	278
TseI	GCWGC	1 cut(s)	357
TspDTI	ATGAA	1 cut(s)	296
TspGWI	ACGGA	1 cut(s)	285
TspRI	CASTG	1 cut(s)	278
VpaK11BI	GGWCC	1 cut(s)	153
XceI	RCATGY	1 cut(s)	106
XmnI	GAANNNNTTC	1 cut(s)	165
Zsp2I	ATGCAT	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.