Rh6CG283300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0002266
Physical Location & Seq
Forward (+)
46103283 .. 46104258
976 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG283300.1

Sequence Viewer

Length: 801 bp
ATGGAGAAAGAAAAGCATACTAAAGAAAGGAAGCATGGAACGTGTATTGCGACAATTGTGAGTCGAAATGCCATTTACACAATTGGAGATGGTAGATGTACATCATCATTGGAGTACAATCTCGGACAAGTCGTGGACGGAGATAAATGCAAGTTGCACATAATCAGCCGGCGACTATTAGCAACAACTGCGGGTGATGCAGATAAAGATACGAGATCTTGTCAACGATTACCTGTTGGGGCACTCAAGGGAAGTGGCAGTGGATGCGTATATGCAGGCGTTTACATCTCCATGTGTCAAACTGATAGAGATACTGCAACAAAGGAATACTACGAGATTCTTCAAAAGGGTGGGGCCTTAGTTGCATGTGTTGACCCTTATTATGGGGGTCATCTTAAAGCGGCTAAGATTTCCAATAAGAAGAAAAGGGATGTACAGATTGAAAGCAAAAGTCATGTATTGAAAATCATTGGAAGCCATTATGATGTACTGGAACGCCTATTGGGCCAGTTGTATTTCATCATAAGCAAAAATCTCGGCTATAATCTTTCAATTGAAGATTGGGTCAAAGATAAGATGATTGAAAGGTTTCAACAAAGATTCAGTATGACTATCCTCGCAGTAGATTGGATACCTGATGTTACTATAGTAAGAGTTTTGTCTTTTGGTGAGCCTTACAATGGTGAGTTGCTAGATAGTGAAGAACTATATGATGATGGTGTTGGTTCTCTGGCCTTTTTTAAGCCTACTGCCACCAATATCGATGACTTGGCAAACATGCTCGTTGACTATGACTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

266

Amino Acids

29.74

Weight (kDa)

6.32

Isoelectric Point (pI)

31.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 191, 401
AfaI GTAC 4 cut(s) 100, 116, 435, 489
AfiI CCNNNNNNNGG 2 cut(s) 383, 680
AflIII ACRYGT 1 cut(s) 41
AgsI TTSAA 7 cut(s) 344, 443, 463, 552, 557, 584, 593
AoxI GGCC 3 cut(s) 354, 505, 732
Asp700I GAANNNNTTC 1 cut(s) 588
AspS9I GGNCC 2 cut(s) 354, 505
AsuHPI GGTGA 3 cut(s) 206, 680, 695
BaeGI GKGCMC 1 cut(s) 244
BccI CCATC 2 cut(s) 83, 710
BcgI CGANNNNNNTGC 2 cut(s) 517, 551
BciVI GTATCC 1 cut(s) 624
BfaI CTAG 1 cut(s) 692
BfmI CTRYAG 1 cut(s) 645
BfuI GTATCC 1 cut(s) 624
BglI GCCNNNNNGGC 1 cut(s) 504
BglII AGATCT 1 cut(s) 215
BisI GCNGC 1 cut(s) 402
BlsI GCNGC 1 cut(s) 403
BmgT120I GGNCC 2 cut(s) 354, 505
BmiI GGNNCC 1 cut(s) 355
BmsI GCATC 2 cut(s) 187, 254
BpuEI CTTGAG 1 cut(s) 230
Bsa29I ATCGAT 1 cut(s) 762
BsaBI GATNNNNATC 1 cut(s) 100
Bsc4I CCNNNNNNNGG 2 cut(s) 383, 680
Bse118I RCCGGY 1 cut(s) 168
Bse1I ACTGG 2 cut(s) 495, 508
Bse8I GATNNNNATC 1 cut(s) 100
BseCI ATCGAT 1 cut(s) 762
BseGI GGATG 2 cut(s) 269, 436
BseJI GATNNNNATC 1 cut(s) 100
BseLI CCNNNNNNNGG 2 cut(s) 383, 680
BseNI ACTGG 2 cut(s) 495, 508
BseSI GKGCMC 1 cut(s) 244
BshFI GGCC 3 cut(s) 356, 507, 734
BshVI ATCGAT 1 cut(s) 762
BsiSI CCGG 1 cut(s) 169
BslI CCNNNNNNNGG 2 cut(s) 383, 680
BsnI GGCC 3 cut(s) 356, 507, 734
Bsp1286I GDGCHC 1 cut(s) 244
Bsp1407I TGTACA 2 cut(s) 98, 433
Bsp143I GATC 1 cut(s) 215
BspACI CCGC 2 cut(s) 191, 401
BspANI GGCC 3 cut(s) 356, 507, 734
BspDI ATCGAT 1 cut(s) 762
BspLI GGNNCC 1 cut(s) 355
BsrFI RCCGGY 1 cut(s) 168
BsrGI TGTACA 2 cut(s) 98, 433
BsrI ACTGG 2 cut(s) 495, 508
BssAI RCCGGY 1 cut(s) 168
BssMI GATC 1 cut(s) 215
BstAPI GCANNNNNTGC 2 cut(s) 188, 264
BstAUI TGTACA 2 cut(s) 98, 433
BstC8I GCNNGC 2 cut(s) 170, 277
BstDEI CTNAG 2 cut(s) 358, 405
BstF5I GGATG 2 cut(s) 269, 436
BstKTI GATC 1 cut(s) 218
BstMBI GATC 1 cut(s) 215
BstMWI GCNNNNNNNGC 5 cut(s) 188, 197, 264, 362, 504
BstNSI RCATGY 2 cut(s) 369, 781
BstSFI CTRYAG 1 cut(s) 645
BstSLI GKGCMC 1 cut(s) 244
BstX2I RGATCY 1 cut(s) 215
BstYI RGATCY 1 cut(s) 215
Bsu15I ATCGAT 1 cut(s) 762
BsuI GTATCC 1 cut(s) 624
BsuRI GGCC 3 cut(s) 356, 507, 734
BsuTUI ATCGAT 1 cut(s) 762
BtsCI GGATG 2 cut(s) 269, 436
BtsI GCAGTG 1 cut(s) 265
BtsIMutI CAGTG 1 cut(s) 265
Cac8I GCNNGC 2 cut(s) 170, 277
Cfr10I RCCGGY 1 cut(s) 168
Cfr13I GGNCC 2 cut(s) 354, 505
ClaI ATCGAT 1 cut(s) 762
Csp6I GTAC 4 cut(s) 99, 115, 434, 488
CspCI CAANNNNNGTGG 2 cut(s) 235, 270
CviAII CATG 5 cut(s) 35, 292, 366, 455, 778
CviJI RGCY 9 cut(s) 168, 356, 404, 477, 507, 540, 673, 734, 745
CviKI_1 RGCY 9 cut(s) 168, 356, 404, 477, 507, 540, 673, 734, 745
CviQI GTAC 4 cut(s) 99, 115, 434, 488
DdeI CTNAG 2 cut(s) 358, 405
DpnI GATC 1 cut(s) 217
DpnII GATC 1 cut(s) 215
EcoO109I RGGNCCY 1 cut(s) 354
FaeI CATG 5 cut(s) 38, 295, 369, 458, 781
FatI CATG 5 cut(s) 34, 291, 365, 454, 777
FauI CCCGC 1 cut(s) 184
Fnu4HI GCNGC 1 cut(s) 402
FokI GGATG 2 cut(s) 276, 443
Fsp4HI GCNGC 1 cut(s) 402
FspBI CTAG 1 cut(s) 692
GluI GCNGC 1 cut(s) 402
HaeIII GGCC 3 cut(s) 356, 507, 734
HapII CCGG 1 cut(s) 169
Hin1II CATG 5 cut(s) 38, 295, 369, 458, 781
HincII GTYRAC 3 cut(s) 224, 373, 787
HindII GTYRAC 3 cut(s) 224, 373, 787
HinfI GANTC 3 cut(s) 61, 337, 600
HpaII CCGG 1 cut(s) 169
HphI GGTGA 3 cut(s) 206, 680, 695
Hpy166II GTNNAC 5 cut(s) 136, 224, 283, 373, 787
Hpy188I TCNGA 2 cut(s) 125, 800
Hpy8I GTNNAC 5 cut(s) 136, 224, 283, 373, 787
HpyCH4IV ACGT 1 cut(s) 41
HpyCH4V TGCA 6 cut(s) 150, 157, 200, 275, 317, 365
HpyF10VI GCNNNNNNNGC 5 cut(s) 188, 197, 264, 362, 504
HpyF3I CTNAG 2 cut(s) 358, 405
HpySE526I ACGT 1 cut(s) 41
Hsp92II CATG 5 cut(s) 38, 295, 369, 458, 781
KroI GCCGGC 1 cut(s) 168
KroNI GCCGGC 1 cut(s) 170
Kzo9I GATC 1 cut(s) 215
LpnPI CCDG 7 cut(s) 182, 246, 261, 476, 521, 648, 716
LweI GCATC 2 cut(s) 187, 254
MaeI CTAG 1 cut(s) 692
MaeII ACGT 1 cut(s) 41
MaeIII GTNAC 1 cut(s) 640
MalI GATC 1 cut(s) 217
MboI GATC 1 cut(s) 215
MboII GAAGA 4 cut(s) 332, 433, 569, 713
MfeI CAATTG 3 cut(s) 54, 81, 552
MflI RGATCY 1 cut(s) 215
MhlI GDGCHC 1 cut(s) 244
MluCI AATT 3 cut(s) 54, 81, 552
MlyI GAGTC 1 cut(s) 70
MnlI CCTC 1 cut(s) 626
MroNI GCCGGC 1 cut(s) 168
MroXI GAANNNNTTC 1 cut(s) 588
MseI TTAA 2 cut(s) 396, 741
MslI CAYNNNNRTG 2 cut(s) 290, 483
MspI CCGG 1 cut(s) 169
MunI CAATTG 3 cut(s) 54, 81, 552
MwoI GCNNNNNNNGC 5 cut(s) 188, 197, 264, 362, 504
NaeI GCCGGC 1 cut(s) 170
NdeII GATC 1 cut(s) 215
NgoMIV GCCGGC 1 cut(s) 168
NlaIII CATG 5 cut(s) 38, 295, 369, 458, 781
NlaIV GGNNCC 1 cut(s) 355
NmeAIII GCCGAG 1 cut(s) 516
NspI RCATGY 2 cut(s) 369, 781
PcsI WCGNNNNNNNCGW 2 cut(s) 47, 129
PdiI GCCGGC 1 cut(s) 170
PdmI GAANNNNTTC 1 cut(s) 588
PfeI GAWTC 2 cut(s) 337, 600
PkrI GCNGC 1 cut(s) 403
PleI GAGTC 1 cut(s) 69
PpsI GAGTC 1 cut(s) 69
PspN4I GGNNCC 1 cut(s) 355
PspPI GGNCC 2 cut(s) 354, 505
PsuI RGATCY 1 cut(s) 215
RsaI GTAC 4 cut(s) 100, 116, 435, 489
RsaNI GTAC 4 cut(s) 99, 115, 434, 488
RseI CAYNNNNRTG 2 cut(s) 290, 483
SaqAI TTAA 2 cut(s) 396, 741
SatI GCNGC 1 cut(s) 402
Sau3AI GATC 1 cut(s) 215
Sau96I GGNCC 2 cut(s) 354, 505
SchI GAGTC 1 cut(s) 70
SduI GDGCHC 1 cut(s) 244
SetI ASST 4 cut(s) 44, 235, 590, 637
SfaNI GCATC 2 cut(s) 187, 254
SfcI CTRYAG 1 cut(s) 645
SmiMI CAYNNNNRTG 2 cut(s) 290, 483
SmlI CTYRAG 1 cut(s) 245
SmoI CTYRAG 1 cut(s) 245
Sse9I AATT 3 cut(s) 54, 81, 552
SsiI CCGC 2 cut(s) 191, 401
SspMI CTAG 1 cut(s) 692
TaiI ACGT 1 cut(s) 44
TaqI TCGA 2 cut(s) 64, 762
TasI AATT 3 cut(s) 54, 81, 552
TatI WGTACW 4 cut(s) 98, 114, 433, 487
TauI GCSGC 1 cut(s) 404
TfiI GAWTC 2 cut(s) 337, 600
Tru1I TTAA 2 cut(s) 396, 741
Tru9I TTAA 2 cut(s) 396, 741
TscAI CASTG 1 cut(s) 265
TspDTI ATGAA 1 cut(s) 508
TspGWI ACGGA 1 cut(s) 153
TspRI CASTG 1 cut(s) 265
XceI RCATGY 2 cut(s) 369, 781
XmnI GAANNNNTTC 1 cut(s) 588
XspI CTAG 1 cut(s) 692
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.