Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0002266

Physical Location & Seq

Genomic Coordinates Forward (+)

19292779 .. 19293804

Gene Structure 1026 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g15790.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGTGAGCTTAAGAAGACACACACACTATAGACTATGTGCTGGGAGAACTCCACTTCCTAAGTTCTCTGACATCAGAACTGCTTCTCAATATCCCAACCACGAAAAACCAAAAAGTTCGCATCCCACATGTTCAAATAATGTAATTAATCGACCAGAGGGGAATAGGACTGCTATAGGGGCTTCGGCTAAGAGTTTCACTGATGCGGTGCTGGCTTTGCCTGCTTTTGTAACTGTGGGAAATGAGGCAGGACACTCTCGTATACACAAGCTGCATTTTCAGAAAAATGGGGATTCTCTTTGGGCTGACGTATCTCAAAGCAGCCAAGTTAGTTCCTTGGAGAATCAAGTAAATGATCCGGGGTTTGATGTATCTCTAAGCGGCCAAGTTAAATCCATGGAGAGCCAAGTAAAAGACCCAGGGGATAAAGTTCTAAGCAGCCAAGTTGAATCCTTGCAGAGCCTAGTAAAATACCCGGAAGCTGACGTATCTCTAAGCAGCCAAAATGAATCCTTGCATAGCCAAGTAAAAGACCTTGAAGCTGACGTATCTCCAAGCAGCCAGGTTAAATCCTCGGAGAACCAAGTAAACGACCCAGGGGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

202

Amino Acids

21.75

Weight (kDa)

6.44

Isoelectric Point (pI)

43.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002266)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g18500 FvH4_2g18510 FvH4_2g18510 FvH4_2g18510 FvH4_2g18510 FvH4_2g18510
malus_domestica	MD05G1170700.v1.1
prunus_persica	Prupe.8G198000_v2.0.a1 Prupe.8G198100_v2.0.a1 Prupe.8G198200_v2.0.a1 Prupe.8G198200_v2.0.a1 Prupe.8G198300_v2.0.a1 Prupe.8G198400_v2.0.a1
pyrus_communis	pycom05g15790
rosa_chinensis	RchiOBHm_Chr6g0284021 RchiOBHm_Chr6g0284061
rosa_laevigata	RLG00000012773 RLG00000012776
rosa_multiflora	Rmu_sc0003102.1_g000003 Rmu_sc0015649.1_g000013 Rmu_ssc0000442.1_g000043
rosa_roxburghii	Rroxscaffold_7G00183920 Rroxscaffold_7G00184970
rosa_rugosa	Rorug06G0159400 Rorug06G0159500 Rorug06G0159600 Rorug06G0160100
rosa_samantha	Rh6AG272700 Rh6AG272800 Rh6AG272900 Rh6AG273200 Rh6BG273300 Rh6BG273700 Rh6BG273800 Rh6CG274500 Rh6CG274600 Rh6CG274700 Rh6CG275300 Rh6CG283300 Rh6DG267700 Rh6DG268200
rosa_wichuraiana	Rw6G023480 Rw6G023510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	262
AciI	CCGC	2 cut(s)	206, 381
AclWI	GGATC	1 cut(s)	350
AcoI	YGGCCR	1 cut(s)	382
AflII	CTTAAG	1 cut(s)	10
AflIII	ACRYGT	1 cut(s)	128
AgsI	TTSAA	3 cut(s)	135, 449, 539
AjnI	CCWGG	3 cut(s)	418, 561, 595
AloI	GAACNNNNNNTCC	2 cut(s)	40, 72
AluBI	AGCT	4 cut(s)	9, 271, 482, 542
AluI	AGCT	4 cut(s)	9, 271, 482, 542
AlwI	GGATC	1 cut(s)	350
AoxI	GGCC	1 cut(s)	382
ApeKI	GCWGC	5 cut(s)	271, 321, 438, 498, 558
AseI	ATTAAT	1 cut(s)	147
Asp700I	GAANNNNTTC	1 cut(s)	82
AsuC2I	CCSGG	2 cut(s)	360, 476
AsuHPI	GGTGA	1 cut(s)	16
BbsI	GAAGAC	1 cut(s)	22
BbvI	GCAGC	5 cut(s)	258, 333, 450, 510, 570
BciT130I	CCWGG	3 cut(s)	420, 563, 597
BcnI	CCSGG	2 cut(s)	360, 476
BfaI	CTAG	1 cut(s)	464
BfmI	CTRYAG	2 cut(s)	28, 174
BfrI	CTTAAG	1 cut(s)	10
BisI	GCNGC	6 cut(s)	272, 322, 382, 439, 499, 559
BlsI	GCNGC	6 cut(s)	273, 323, 383, 440, 500, 560
Bme1390I	CCNGG	5 cut(s)	360, 420, 476, 563, 597
BmrFI	CCNGG	5 cut(s)	360, 420, 476, 563, 597
BmsI	GCATC	2 cut(s)	130, 193
BpiI	GAAGAC	1 cut(s)	22
BpuMI	CCSGG	2 cut(s)	360, 476
BsaJI	CCNNGG	8 cut(s)	336, 359, 396, 418, 419, 573, 595, 596
BseBI	CCWGG	3 cut(s)	420, 563, 597
BseDI	CCNNGG	8 cut(s)	336, 359, 396, 418, 419, 573, 595, 596
BseGI	GGATG	1 cut(s)	121
BseXI	GCAGC	5 cut(s)	258, 333, 450, 510, 570
BseYI	CCCAGC	1 cut(s)	41
BshFI	GGCC	1 cut(s)	384
BsiSI	CCGG	2 cut(s)	359, 476
BsnI	GGCC	1 cut(s)	384
Bsp143I	GATC	1 cut(s)	355
Bsp19I	CCATGG	1 cut(s)	396
BspACI	CCGC	2 cut(s)	206, 381
BspANI	GGCC	1 cut(s)	384
BspPI	GGATC	1 cut(s)	350
BspTI	CTTAAG	1 cut(s)	10
BssECI	CCNNGG	8 cut(s)	336, 359, 396, 418, 419, 573, 595, 596
BssMI	GATC	1 cut(s)	355
BssNAI	GTATAC	1 cut(s)	263
BssT1I	CCWWGG	2 cut(s)	336, 396
Bst1107I	GTATAC	1 cut(s)	263
Bst2UI	CCWGG	3 cut(s)	420, 563, 597
Bst4CI	ACNGT	1 cut(s)	235
BstAFI	CTTAAG	1 cut(s)	10
BstC8I	GCNNGC	2 cut(s)	213, 222
BstDEI	CTNAG	5 cut(s)	60, 189, 377, 434, 494
BstDSI	CCRYGG	1 cut(s)	396
BstF5I	GGATG	1 cut(s)	121
BstKTI	GATC	1 cut(s)	358
BstMBI	GATC	1 cut(s)	355
BstMWI	GCNNNNNNNGC	4 cut(s)	179, 212, 217, 221
BstNI	CCWGG	3 cut(s)	420, 563, 597
BstNSI	RCATGY	1 cut(s)	132
BstSCI	CCNGG	5 cut(s)	358, 418, 474, 561, 595
BstSFI	CTRYAG	2 cut(s)	28, 174
BstV1I	GCAGC	5 cut(s)	258, 333, 450, 510, 570
BstV2I	GAAGAC	1 cut(s)	22
BstZ17I	GTATAC	1 cut(s)	263
BsuRI	GGCC	1 cut(s)	384
BtgI	CCRYGG	1 cut(s)	396
BtsCI	GGATG	1 cut(s)	121
BtsIMutI	CAGTG	1 cut(s)	198
Cac8I	GCNNGC	2 cut(s)	213, 222
CviAII	CATG	2 cut(s)	129, 397
DdeI	CTNAG	5 cut(s)	60, 189, 377, 434, 494
DpnI	GATC	1 cut(s)	357
DpnII	GATC	1 cut(s)	355
EaeI	YGGCCR	1 cut(s)	382
Eco130I	CCWWGG	2 cut(s)	336, 396
EcoRII	CCWGG	3 cut(s)	418, 561, 595
EcoT14I	CCWWGG	2 cut(s)	336, 396
ErhI	CCWWGG	2 cut(s)	336, 396
FaeI	CATG	2 cut(s)	132, 400
FaiI	YATR	7 cut(s)	30, 37, 130, 176, 263, 398, 519
FatI	CATG	2 cut(s)	128, 396
FblI	GTMKAC	1 cut(s)	262
Fnu4HI	GCNGC	6 cut(s)	272, 322, 382, 439, 499, 559
FokI	GGATG	1 cut(s)	108
Fsp4HI	GCNGC	6 cut(s)	272, 322, 382, 439, 499, 559
FspBI	CTAG	1 cut(s)	464
GluI	GCNGC	6 cut(s)	272, 322, 382, 439, 499, 559
GsaI	CCCAGC	1 cut(s)	45
HaeIII	GGCC	1 cut(s)	384
HapII	CCGG	2 cut(s)	359, 476
Hin1II	CATG	2 cut(s)	132, 400
HinfI	GANTC	4 cut(s)	293, 343, 449, 509
HpaII	CCGG	2 cut(s)	359, 476
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	2 cut(s)	263, 589
Hpy188I	TCNGA	4 cut(s)	70, 77, 282, 577
Hpy8I	GTNNAC	2 cut(s)	263, 589
HpyCH4III	ACNGT	1 cut(s)	235
HpyCH4IV	ACGT	3 cut(s)	309, 486, 546
HpyCH4V	TGCA	3 cut(s)	274, 457, 517
HpyF10VI	GCNNNNNNNGC	4 cut(s)	179, 212, 217, 221
HpyF3I	CTNAG	5 cut(s)	60, 189, 377, 434, 494
HpySE526I	ACGT	3 cut(s)	309, 486, 546
Hsp92II	CATG	2 cut(s)	132, 400
Kzo9I	GATC	1 cut(s)	355
Lsp1109I	GCAGC	5 cut(s)	258, 333, 450, 510, 570
LweI	GCATC	2 cut(s)	130, 193
MaeI	CTAG	1 cut(s)	464
MaeII	ACGT	3 cut(s)	309, 486, 546
MaeIII	GTNAC	1 cut(s)	229
MalI	GATC	1 cut(s)	357
MboI	GATC	1 cut(s)	355
MboII	GAAGA	1 cut(s)	27
MluCI	AATT	1 cut(s)	144
MnlI	CCTC	3 cut(s)	151, 238, 583
MroXI	GAANNNNTTC	1 cut(s)	82
MseI	TTAA	4 cut(s)	11, 147, 390, 567
MspCI	CTTAAG	1 cut(s)	10
MspI	CCGG	2 cut(s)	359, 476
MspR9I	CCNGG	5 cut(s)	360, 420, 476, 563, 597
MvaI	CCWGG	3 cut(s)	420, 563, 597
MwoI	GCNNNNNNNGC	4 cut(s)	179, 212, 217, 221
NciI	CCSGG	2 cut(s)	360, 476
NcoI	CCATGG	1 cut(s)	396
NdeII	GATC	1 cut(s)	355
NlaIII	CATG	2 cut(s)	132, 400
NspI	RCATGY	1 cut(s)	132
PasI	CCCWGGG	2 cut(s)	419, 596
PciI	ACATGT	1 cut(s)	128
PdmI	GAANNNNTTC	1 cut(s)	82
PfeI	GAWTC	4 cut(s)	293, 343, 449, 509
PkrI	GCNGC	6 cut(s)	273, 323, 383, 440, 500, 560
PscI	ACATGT	1 cut(s)	128
PshBI	ATTAAT	1 cut(s)	147
Psp6I	CCWGG	3 cut(s)	418, 561, 595
PspFI	CCCAGC	1 cut(s)	41
PspGI	CCWGG	3 cut(s)	418, 561, 595
SaqAI	TTAA	4 cut(s)	11, 147, 390, 567
SatI	GCNGC	6 cut(s)	272, 322, 382, 439, 499, 559
Sau3AI	GATC	1 cut(s)	355
ScrFI	CCNGG	5 cut(s)	360, 420, 476, 563, 597
SetI	ASST	9 cut(s)	11, 273, 312, 484, 489, 537, 544, 549, 567
SfaNI	GCATC	2 cut(s)	130, 193
SfcI	CTRYAG	2 cut(s)	28, 174
SmlI	CTYRAG	1 cut(s)	10
SmoI	CTYRAG	1 cut(s)	10
Sse9I	AATT	1 cut(s)	144
SsiI	CCGC	2 cut(s)	206, 381
SspMI	CTAG	1 cut(s)	464
StyD4I	CCNGG	5 cut(s)	358, 418, 474, 561, 595
StyI	CCWWGG	2 cut(s)	336, 396
TaaI	ACNGT	1 cut(s)	235
TaiI	ACGT	3 cut(s)	312, 489, 549
TaqI	TCGA	1 cut(s)	151
TasI	AATT	1 cut(s)	144
TauI	GCSGC	1 cut(s)	384
TfiI	GAWTC	4 cut(s)	293, 343, 449, 509
Tru1I	TTAA	4 cut(s)	11, 147, 390, 567
Tru9I	TTAA	4 cut(s)	11, 147, 390, 567
TscAI	CASTG	1 cut(s)	205
TseI	GCWGC	5 cut(s)	271, 321, 438, 498, 558
TspDTI	ATGAA	1 cut(s)	522
TspRI	CASTG	1 cut(s)	205
Vha464I	CTTAAG	1 cut(s)	10
VspI	ATTAAT	1 cut(s)	147
XceI	RCATGY	1 cut(s)	132
XmiI	GTMKAC	1 cut(s)	262
XmnI	GAANNNNTTC	1 cut(s)	82
XspI	CTAG	1 cut(s)	464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.