Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0002266

Physical Location & Seq

Genomic Coordinates Forward (+)

46027851 .. 46032096

Gene Structure 4246 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG267700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGGCCTTCCAGACCTTCTCTGCCTCCTGTGGAGTAATGTGCCACGTACACAACAATGACGAACGAGTGAGCTCTCTGCTAATGGATTTGGAATCAACCATGGTGAGCTTAAGAAGACAGAAACGCTTGAGGCCATGCTCTGGAAGTAGTTCGGGTGTAGCTTCACTTCCTGGTTTTTGTGACAATGGAACTTCTCTTCAAGCTTCTACCCAGGAAAAACCTGATAATGTGCATCTCACACCTTCAAACAATTCCTGCGGCTCCTGCCTCCATATTGCTATGTGGCTAAGGGTTACTGGGGATGCCTCTAAGGAGCGAGATGAAGCAATAGCTCGTGTTGCAGAGCTGGAGAAAAGAGTTGGAAACTTTGTAGAAACCACTACCAAACAGGAGGCAGTAATCGAGTTTATGAGGCAACAGGTCCTGGAATACTCTAGCATGAAGAGGGAGTATGAGTCCAAGCTTGATGGTTTGTTAAATGATGTTAGTCAGCAGAGGCAGAAGGCTGAAATGTGGGAGAGTAAGTGCAAGGAGCAGGAGGCCTTGCATCAGGTTAAGGCTACTCGTCTGGAGGAGTTTTCTTGTCACCTGGAAGAGGTCTTGAAGCAGCTTGGGGAGGCCAATGCTGACCTTTCTGAGGTCACTCAGGGCCTTCATGTGGCTAGGGAAGGTATTGAGAAGATCACAGGTACCTTTACTCAGGCTGAGGTTAAAGTGAAGCAGCTCCAGAAGAGCTGTGAAATGTATAGGGTGCTTCGTGACATGGAGAAGGAAAAGCATACCAAAGTAAGGACTGCTCCAAGTGCTGAGCTCAAGGAGGATCTCCAGAGGAACGAAAACCATAAGCAGAACAAAGATGGTAACATGCTAACCAGGGAGATGATCAAAGAACTAAAAAAGCAGGTGATGAGGTGGTCCCAAGAAAAGTTTCAGGAGGAAGGTGAAGACCGGGACATGGATGGAGAGGGCTCTAATGCATCAAGGGAACAAGTGGAGGGTGGGGATGCTCTGTCTTTCTGGACGATTTGCAATCACTGCAAAATGTTTCCAGGTCATCCAGTAGGTCTTCTCTCCAGCAACATTAAAATTCAACAGTCCATTCTTCATCAAAGGGGAAGGGTCCTGCTGCTGCATAGGTGGATAGAGAAGTGGACCTCCATGATGCTATATGAGCTAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

393

Amino Acids

44.9

Weight (kDa)

6.27

Isoelectric Point (pI)

51.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002266)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g18500 FvH4_2g18510 FvH4_2g18510 FvH4_2g18510 FvH4_2g18510 FvH4_2g18510
malus_domestica	MD05G1170700.v1.1
prunus_persica	Prupe.8G198000_v2.0.a1 Prupe.8G198100_v2.0.a1 Prupe.8G198200_v2.0.a1 Prupe.8G198200_v2.0.a1 Prupe.8G198300_v2.0.a1 Prupe.8G198400_v2.0.a1
pyrus_communis	pycom05g15790
rosa_chinensis	RchiOBHm_Chr6g0284021 RchiOBHm_Chr6g0284061
rosa_laevigata	RLG00000012773 RLG00000012776
rosa_multiflora	Rmu_sc0003102.1_g000003 Rmu_sc0015649.1_g000013 Rmu_ssc0000442.1_g000043
rosa_roxburghii	Rroxscaffold_7G00183920 Rroxscaffold_7G00184970
rosa_rugosa	Rorug06G0159400 Rorug06G0159500 Rorug06G0159600 Rorug06G0160100
rosa_samantha	Rh6AG272700 Rh6AG272800 Rh6AG272900 Rh6AG273200 Rh6BG273300 Rh6BG273700 Rh6BG273800 Rh6CG274500 Rh6CG274600 Rh6CG274700 Rh6CG275300 Rh6CG283300 Rh6DG267700 Rh6DG268200
rosa_wichuraiana	Rw6G023480 Rw6G023510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	892
Acc36I	ACCTGC	1 cut(s)	892
Acc65I	GGTACC	1 cut(s)	689
AccB1I	GGYRCC	1 cut(s)	689
AccB7I	CCANNNNNTGG	1 cut(s)	140
AciI	CCGC	1 cut(s)	258
AclWI	GGATC	1 cut(s)	828
AcsI	RAATTY	1 cut(s)	1086
AfaI	GTAC	2 cut(s)	48, 691
AfiI	CCNNNNNNNGG	6 cut(s)	140, 595, 637, 658, 789, 955
AflII	CTTAAG	1 cut(s)	109
AgsI	TTSAA	4 cut(s)	200, 246, 604, 1091
AjnI	CCWGG	6 cut(s)	169, 210, 423, 588, 872, 1048
AjuI	GAANNNNNNNTTGG	2 cut(s)	912, 944
Alw21I	GWGCWC	2 cut(s)	74, 813
AlwI	GGATC	1 cut(s)	828
AlwNI	CAGNNNCTG	1 cut(s)	424
AoxI	GGCC	5 cut(s)	3, 131, 540, 618, 649
ApeKI	GCWGC	4 cut(s)	607, 721, 1126, 1129
ApoI	RAATTY	1 cut(s)	1086
Asp700I	GAANNNNTTC	2 cut(s)	148, 927
Asp718I	GGTACC	1 cut(s)	689
AspS9I	GGNCC	5 cut(s)	421, 649, 915, 1120, 1152
AsuC2I	CCSGG	1 cut(s)	950
AsuHPI	GGTGA	4 cut(s)	115, 578, 916, 953
AvaII	GGWCC	4 cut(s)	421, 915, 1120, 1152
BanI	GGYRCC	1 cut(s)	689
BanII	GRGCYC	3 cut(s)	74, 813, 971
BarI	GAAGNNNNNNTAC	2 cut(s)	150, 182
BauI	CACGAG	1 cut(s)	333
BbsI	GAAGAC	3 cut(s)	121, 951, 1058
Bbv12I	GWGCWC	2 cut(s)	74, 813
BbvCI	CCTCAGC	1 cut(s)	705
BbvI	GCAGC	4 cut(s)	619, 733, 1113, 1116
BccI	CCATC	3 cut(s)	461, 851, 953
BciT130I	CCWGG	6 cut(s)	171, 212, 425, 590, 874, 1050
BclI	TGATCA	1 cut(s)	882
BcnI	CCSGG	1 cut(s)	950
BfaI	CTAG	3 cut(s)	435, 663, 1175
BfrI	CTTAAG	1 cut(s)	109
BfuAI	ACCTGC	1 cut(s)	892
BisI	GCNGC	5 cut(s)	259, 608, 722, 1127, 1130
BlpI	GCTNAGC	1 cut(s)	807
BlsI	GCNGC	5 cut(s)	260, 609, 723, 1128, 1131
Bme1390I	CCNGG	7 cut(s)	171, 212, 425, 590, 874, 950, 1050
Bme18I	GGWCC	4 cut(s)	421, 915, 1120, 1152
BmgT120I	GGNCC	5 cut(s)	421, 649, 915, 1120, 1152
BmiI	GGNNCC	4 cut(s)	262, 691, 917, 1121
BmrFI	CCNGG	7 cut(s)	171, 212, 425, 590, 874, 950, 1050
BmrI	ACTGGG	1 cut(s)	306
BmsI	GCATC	6 cut(s)	241, 292, 556, 986, 994, 1152
BmuI	ACTGGG	1 cut(s)	306
BpiI	GAAGAC	3 cut(s)	121, 951, 1058
BpmI	CTGGAG	5 cut(s)	368, 590, 710, 809, 1057
Bpu10I	CCTNAGC	2 cut(s)	287, 705
Bpu1102I	GCTNAGC	1 cut(s)	807
BpuEI	CTTGAG	2 cut(s)	148, 797
BpuMI	CCSGG	1 cut(s)	950
BsaAI	YACGTR	1 cut(s)	46
BsaJI	CCNNGG	3 cut(s)	99, 210, 873
BsaXI	ACNNNNNCTCC	4 cut(s)	440, 470, 509, 539
Bsc4I	CCNNNNNNNGG	6 cut(s)	140, 595, 637, 658, 789, 955
Bse1I	ACTGG	2 cut(s)	301, 1058
BseBI	CCWGG	6 cut(s)	171, 212, 425, 590, 874, 1050
BseDI	CCNNGG	3 cut(s)	99, 210, 873
BseGI	GGATG	4 cut(s)	307, 964, 1009, 1054
BseLI	CCNNNNNNNGG	6 cut(s)	140, 595, 637, 658, 789, 955
BseMII	CTCAG	5 cut(s)	627, 659, 696, 713, 798
BseNI	ACTGG	2 cut(s)	301, 1058
BseRI	GAGGAG	1 cut(s)	587
BseXI	GCAGC	4 cut(s)	619, 733, 1113, 1116
BshFI	GGCC	5 cut(s)	5, 133, 542, 620, 651
BshNI	GGYRCC	1 cut(s)	689
BsiHKAI	GWGCWC	2 cut(s)	74, 813
BsiSI	CCGG	1 cut(s)	949
BslFI	GGGAC	2 cut(s)	901, 965
BslI	CCNNNNNNNGG	6 cut(s)	140, 595, 637, 658, 789, 955
BsmFI	GGGAC	2 cut(s)	901, 965
BsnI	GGCC	5 cut(s)	5, 133, 542, 620, 651
Bsp1286I	GDGCHC	3 cut(s)	74, 813, 971
Bsp143I	GATC	3 cut(s)	681, 820, 882
Bsp1720I	GCTNAGC	1 cut(s)	807
Bsp19I	CCATGG	1 cut(s)	99
BspACI	CCGC	1 cut(s)	258
BspANI	GGCC	5 cut(s)	5, 133, 542, 620, 651
BspCNI	CTCAG	5 cut(s)	628, 658, 697, 712, 799
BspLI	GGNNCC	4 cut(s)	262, 691, 917, 1121
BspMI	ACCTGC	1 cut(s)	892
BspPI	GGATC	1 cut(s)	828
BspQI	GCTCTTC	1 cut(s)	725
BspT107I	GGYRCC	1 cut(s)	689
BspTI	CTTAAG	1 cut(s)	109
BsrI	ACTGG	2 cut(s)	301, 1058
BssECI	CCNNGG	3 cut(s)	99, 210, 873
BssMI	GATC	3 cut(s)	681, 820, 882
BssSI	CACGAG	1 cut(s)	333
BssT1I	CCWWGG	1 cut(s)	99
Bst2BI	CACGAG	1 cut(s)	333
Bst2UI	CCWGG	6 cut(s)	171, 212, 425, 590, 874, 1050
Bst4CI	ACNGT	1 cut(s)	1095
Bst6I	CTCTTC	4 cut(s)	201, 437, 588, 725
BstAFI	CTTAAG	1 cut(s)	109
BstAPI	GCANNNNNTGC	1 cut(s)	1035
BstBAI	YACGTR	1 cut(s)	46
BstDEI	CTNAG	7 cut(s)	287, 309, 636, 645, 699, 705, 807
BstDSI	CCRYGG	1 cut(s)	99
BstENI	CCTNNNNNAGG	2 cut(s)	593, 635
BstF5I	GGATG	4 cut(s)	307, 964, 1009, 1054
BstKTI	GATC	3 cut(s)	684, 823, 885
BstMBI	GATC	3 cut(s)	681, 820, 882
BstMWI	GCNNNNNNNGC	5 cut(s)	264, 338, 803, 1035, 1171
BstNI	CCWGG	6 cut(s)	171, 212, 425, 590, 874, 1050
BstNSI	RCATGY	1 cut(s)	868
BstSCI	CCNGG	7 cut(s)	169, 210, 423, 588, 872, 948, 1048
BstV1I	GCAGC	4 cut(s)	619, 733, 1113, 1116
BstV2I	GAAGAC	3 cut(s)	121, 951, 1058
BstX2I	RGATCY	1 cut(s)	820
BstYI	RGATCY	1 cut(s)	820
BsuRI	GGCC	5 cut(s)	5, 133, 542, 620, 651
BtgI	CCRYGG	1 cut(s)	99
BtsCI	GGATG	4 cut(s)	307, 964, 1009, 1054
BtsI	GCAGTG	1 cut(s)	1033
BtsIMutI	CAGTG	1 cut(s)	1033
BveI	ACCTGC	1 cut(s)	892
CaiI	CAGNNNCTG	1 cut(s)	424
Cfr13I	GGNCC	5 cut(s)	421, 649, 915, 1120, 1152
Csp6I	GTAC	2 cut(s)	47, 690
CviAII	CATG	8 cut(s)	100, 135, 439, 656, 763, 865, 955, 1159
CviQI	GTAC	2 cut(s)	47, 690
DdeI	CTNAG	7 cut(s)	287, 309, 636, 645, 699, 705, 807
DpnI	GATC	3 cut(s)	683, 822, 884
DpnII	GATC	3 cut(s)	681, 820, 882
Eam1104I	CTCTTC	4 cut(s)	201, 437, 588, 725
EarI	CTCTTC	4 cut(s)	201, 437, 588, 725
Ecl136II	GAGCTC	2 cut(s)	72, 811
Eco130I	CCWWGG	1 cut(s)	99
Eco147I	AGGCCT	1 cut(s)	542
Eco24I	GRGCYC	3 cut(s)	74, 813, 971
Eco47I	GGWCC	4 cut(s)	421, 915, 1120, 1152
Eco53kI	GAGCTC	2 cut(s)	72, 811
EcoICRI	GAGCTC	2 cut(s)	72, 811
EcoNI	CCTNNNNNAGG	2 cut(s)	593, 635
EcoO109I	RGGNCCY	3 cut(s)	421, 649, 1120
EcoRII	CCWGG	6 cut(s)	169, 210, 423, 588, 872, 1048
EcoT14I	CCWWGG	1 cut(s)	99
EcoT22I	ATGCAT	1 cut(s)	979
EcoT38I	GRGCYC	3 cut(s)	74, 813, 971
ErhI	CCWWGG	1 cut(s)	99
FaeI	CATG	8 cut(s)	103, 138, 442, 659, 766, 868, 958, 1162
FaqI	GGGAC	2 cut(s)	901, 965
FatI	CATG	8 cut(s)	99, 134, 438, 655, 762, 864, 954, 1158
FbaI	TGATCA	1 cut(s)	882
Fnu4HI	GCNGC	5 cut(s)	259, 608, 722, 1127, 1130
FokI	GGATG	4 cut(s)	314, 971, 1016, 1041
FriOI	GRGCYC	3 cut(s)	74, 813, 971
Fsp4HI	GCNGC	5 cut(s)	259, 608, 722, 1127, 1130
FspBI	CTAG	3 cut(s)	435, 663, 1175
GluI	GCNGC	5 cut(s)	259, 608, 722, 1127, 1130
GsuI	CTGGAG	5 cut(s)	368, 590, 710, 809, 1057
HaeIII	GGCC	5 cut(s)	5, 133, 542, 620, 651
HapII	CCGG	1 cut(s)	949
Hin1II	CATG	8 cut(s)	103, 138, 442, 659, 766, 868, 958, 1162
HindIII	AAGCTT	2 cut(s)	201, 461
HinfI	GANTC	2 cut(s)	92, 455
HpaII	CCGG	1 cut(s)	949
HphI	GGTGA	4 cut(s)	115, 578, 916, 953
Hpy166II	GTNNAC	2 cut(s)	49, 1152
Hpy188I	TCNGA	1 cut(s)	637
Hpy188III	TCNNGA	9 cut(s)	10, 141, 569, 601, 727, 758, 826, 932, 1018
Hpy8I	GTNNAC	2 cut(s)	49, 1152
HpyAV	CCTTC	9 cut(s)	16, 25, 252, 496, 662, 662, 763, 932, 1110
HpyCH4III	ACNGT	1 cut(s)	1095
HpyCH4IV	ACGT	1 cut(s)	45
HpyCH4V	TGCA	8 cut(s)	232, 341, 528, 547, 977, 1029, 1038, 1132
HpyF10VI	GCNNNNNNNGC	5 cut(s)	264, 338, 803, 1035, 1171
HpyF3I	CTNAG	7 cut(s)	287, 309, 636, 645, 699, 705, 807
HpySE526I	ACGT	1 cut(s)	45
Hsp92II	CATG	8 cut(s)	103, 138, 442, 659, 766, 868, 958, 1162
KpnI	GGTACC	1 cut(s)	693
Ksp22I	TGATCA	1 cut(s)	882
Kzo9I	GATC	3 cut(s)	681, 820, 882
LguI	GCTCTTC	1 cut(s)	725
LmnI	GCTCC	5 cut(s)	266, 313, 532, 729, 802
Lsp1109I	GCAGC	4 cut(s)	619, 733, 1113, 1116
LweI	GCATC	6 cut(s)	241, 292, 556, 986, 994, 1152
MaeI	CTAG	3 cut(s)	435, 663, 1175
MaeII	ACGT	1 cut(s)	45
MaeIII	GTNAC	6 cut(s)	179, 292, 584, 640, 758, 860
MalI	GATC	3 cut(s)	683, 822, 884
MboI	GATC	3 cut(s)	681, 820, 882
MboII	GAAGA	9 cut(s)	126, 188, 454, 605, 691, 742, 956, 1058, 1094
MflI	RGATCY	1 cut(s)	820
MhlI	GDGCHC	3 cut(s)	74, 813, 971
MluCI	AATT	2 cut(s)	250, 1086
MlyI	GAGTC	1 cut(s)	464
MmeI	TCCRAC	1 cut(s)	340
Mph1103I	ATGCAT	1 cut(s)	979
MroXI	GAANNNNTTC	2 cut(s)	148, 927
MseI	TTAA	5 cut(s)	110, 476, 555, 711, 1083
MslI	CAYNNNNRTG	1 cut(s)	54
MspCI	CTTAAG	1 cut(s)	109
MspI	CCGG	1 cut(s)	949
MspR9I	CCNGG	7 cut(s)	171, 212, 425, 590, 874, 950, 1050
MvaI	CCWGG	6 cut(s)	171, 212, 425, 590, 874, 1050
MwoI	GCNNNNNNNGC	5 cut(s)	264, 338, 803, 1035, 1171
NciI	CCSGG	1 cut(s)	950
NcoI	CCATGG	1 cut(s)	99
NdeII	GATC	3 cut(s)	681, 820, 882
NlaIII	CATG	8 cut(s)	103, 138, 442, 659, 766, 868, 958, 1162
NlaIV	GGNNCC	4 cut(s)	262, 691, 917, 1121
NmuCI	GTSAC	4 cut(s)	179, 584, 640, 758
NsiI	ATGCAT	1 cut(s)	979
NspI	RCATGY	1 cut(s)	868
PaqCI	CACCTGC	1 cut(s)	892
PceI	AGGCCT	1 cut(s)	542
PciSI	GCTCTTC	1 cut(s)	725
PdmI	GAANNNNTTC	2 cut(s)	148, 927
PfeI	GAWTC	1 cut(s)	92
PflMI	CCANNNNNTGG	1 cut(s)	140
PfoI	TCCNGGA	1 cut(s)	423
PkrI	GCNGC	5 cut(s)	260, 609, 723, 1128, 1131
PleI	GAGTC	1 cut(s)	463
PpsI	GAGTC	1 cut(s)	463
Ppu21I	YACGTR	1 cut(s)	46
PpuMI	RGGWCCY	2 cut(s)	421, 1120
Psp124BI	GAGCTC	2 cut(s)	74, 813
Psp5II	RGGWCCY	2 cut(s)	421, 1120
Psp6I	CCWGG	6 cut(s)	169, 210, 423, 588, 872, 1048
PspGI	CCWGG	6 cut(s)	169, 210, 423, 588, 872, 1048
PspN4I	GGNNCC	4 cut(s)	262, 691, 917, 1121
PspPI	GGNCC	5 cut(s)	421, 649, 915, 1120, 1152
PspPPI	RGGWCCY	2 cut(s)	421, 1120
PstNI	CAGNNNCTG	1 cut(s)	424
PsuI	RGATCY	1 cut(s)	820
RsaI	GTAC	2 cut(s)	48, 691
RsaNI	GTAC	2 cut(s)	47, 690
RseI	CAYNNNNRTG	1 cut(s)	54
SacI	GAGCTC	2 cut(s)	74, 813
SapI	GCTCTTC	1 cut(s)	725
SaqAI	TTAA	5 cut(s)	110, 476, 555, 711, 1083
SatI	GCNGC	5 cut(s)	259, 608, 722, 1127, 1130
Sau3AI	GATC	3 cut(s)	681, 820, 882
Sau96I	GGNCC	5 cut(s)	421, 649, 915, 1120, 1152
SchI	GAGTC	1 cut(s)	464
ScrFI	CCNGG	7 cut(s)	171, 212, 425, 590, 874, 950, 1050
SduI	GDGCHC	3 cut(s)	74, 813, 971
SfaNI	GCATC	6 cut(s)	241, 292, 556, 986, 994, 1152
SinI	GGWCC	4 cut(s)	421, 915, 1120, 1152
SmiMI	CAYNNNNRTG	1 cut(s)	54
SmlI	CTYRAG	3 cut(s)	109, 127, 812
SmoI	CTYRAG	3 cut(s)	109, 127, 812
Sse9I	AATT	2 cut(s)	250, 1086
SseBI	AGGCCT	1 cut(s)	542
SsiI	CCGC	1 cut(s)	258
SspMI	CTAG	3 cut(s)	435, 663, 1175
SstI	GAGCTC	2 cut(s)	74, 813
StuI	AGGCCT	1 cut(s)	542
StyD4I	CCNGG	7 cut(s)	169, 210, 423, 588, 872, 948, 1048
StyI	CCWWGG	1 cut(s)	99
TaaI	ACNGT	1 cut(s)	1095
TaiI	ACGT	1 cut(s)	48
TaqI	TCGA	1 cut(s)	402
TasI	AATT	2 cut(s)	250, 1086
TauI	GCSGC	1 cut(s)	261
TfiI	GAWTC	1 cut(s)	92
Tru1I	TTAA	5 cut(s)	110, 476, 555, 711, 1083
Tru9I	TTAA	5 cut(s)	110, 476, 555, 711, 1083
TscAI	CASTG	1 cut(s)	1040
TseFI	GTSAC	4 cut(s)	179, 584, 640, 758
TseI	GCWGC	4 cut(s)	607, 721, 1126, 1129
Tsp45I	GTSAC	4 cut(s)	179, 584, 640, 758
TspDTI	ATGAA	4 cut(s)	336, 455, 644, 1094
TspRI	CASTG	1 cut(s)	1040
Van91I	CCANNNNNTGG	1 cut(s)	140
Vha464I	CTTAAG	1 cut(s)	109
VpaK11BI	GGWCC	4 cut(s)	421, 915, 1120, 1152
XagI	CCTNNNNNAGG	2 cut(s)	593, 635
XapI	RAATTY	1 cut(s)	1086
XceI	RCATGY	1 cut(s)	868
XmnI	GAANNNNTTC	2 cut(s)	148, 927
XspI	CTAG	3 cut(s)	435, 663, 1175
Zsp2I	ATGCAT	1 cut(s)	979

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.