Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0002266

Physical Location & Seq

Genomic Coordinates Forward (+)

18897512 .. 18899623

Gene Structure 2112 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G198400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGTGAGCTTAAGAAGACACACACACTTCAGACTATGCGCTGGAAGAACATCACTTCCTAGGTTTTGTGACATCAGAACTGCCCTGACTTCTAGCCATGCAAAACCAAAGAGTGTGCATCGGATGCGTTCAAATGGTTCAAATGATGTAAATCAGCCAGAGAGGAATGCGACTGCTATAGGGTCTTCCGCGAAGGTTTTCACCGATGCAGTGCTGGCTTTGCCTGCTTTTGCAAATGTGGGAAGTGAGTCAGGACACTCTCGTATACCTTGGCGGCGCTTTGAGATTGATGGGAGTTCTCTGGGGGCTTATATATCTCAAAGCAACCAAGTTATACCCTTGCAAAGCCAAGTAAAAGACCAAGAATCTTACACCCTTCAGCTTGACAAGAGGATAGAGAACTTGCAAACCATGGTCAGCAAGCTAAAGGAGGAGAACACACAGCAAACTGGTGAGCTGGATACTGCAAAGGTTGAACTTGAGAAGCAGCAAGCAGACTTGGAGATGCTTGAGTTTGACAAATTACTTATGCAAATGGTTGAGAAGCTGTGCGGGAATGTAGAGCTCAGCCATCAAATAGAGTTGGTGATGGGTGAGCCTAACCAAATGCAGCTGAGGGAGATTTTGCAAAAGGTTGAGAAGCTGTGTGAGGATCTCAGAAGCGTCGCTTCAGCCGGTGTTGTGGAGGATTCTGCGGCTCCAACAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

237

Amino Acids

26.35

Weight (kDa)

5.92

Isoelectric Point (pI)

47.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002266)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g18500 FvH4_2g18510 FvH4_2g18510 FvH4_2g18510 FvH4_2g18510 FvH4_2g18510
malus_domestica	MD05G1170700.v1.1
prunus_persica	Prupe.8G198000_v2.0.a1 Prupe.8G198100_v2.0.a1 Prupe.8G198200_v2.0.a1 Prupe.8G198200_v2.0.a1 Prupe.8G198300_v2.0.a1 Prupe.8G198400_v2.0.a1
pyrus_communis	pycom05g15790
rosa_chinensis	RchiOBHm_Chr6g0284021 RchiOBHm_Chr6g0284061
rosa_laevigata	RLG00000012773 RLG00000012776
rosa_multiflora	Rmu_sc0003102.1_g000003 Rmu_sc0015649.1_g000013 Rmu_ssc0000442.1_g000043
rosa_roxburghii	Rroxscaffold_7G00183920 Rroxscaffold_7G00184970
rosa_rugosa	Rorug06G0159400 Rorug06G0159500 Rorug06G0159600 Rorug06G0160100
rosa_samantha	Rh6AG272700 Rh6AG272800 Rh6AG272900 Rh6AG273200 Rh6BG273300 Rh6BG273700 Rh6BG273800 Rh6CG274500 Rh6CG274600 Rh6CG274700 Rh6CG275300 Rh6CG283300 Rh6DG267700 Rh6DG268200
rosa_wichuraiana	Rw6G023480 Rw6G023510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	265
AccII	CGCG	1 cut(s)	191
AciI	CCGC	4 cut(s)	189, 274, 552, 695
AclWI	GGATC	1 cut(s)	660
AcuI	CTGAAG	3 cut(s)	13, 362, 654
AflII	CTTAAG	1 cut(s)	10
AgsI	TTSAA	3 cut(s)	132, 141, 476
AloI	GAACNNNNNNTCC	2 cut(s)	40, 72
AluBI	AGCT	8 cut(s)	9, 382, 424, 457, 547, 565, 613, 643
AluI	AGCT	8 cut(s)	9, 382, 424, 457, 547, 565, 613, 643
Alw21I	GWGCWC	1 cut(s)	567
AlwI	GGATC	1 cut(s)	660
ApeKI	GCWGC	2 cut(s)	487, 610
Asp700I	GAANNNNTTC	1 cut(s)	197
AspA2I	CCTAGG	1 cut(s)	59
AspLEI	GCGC	2 cut(s)	41, 279
AsuHPI	GGTGA	5 cut(s)	16, 193, 464, 598, 605
AvrII	CCTAGG	1 cut(s)	59
BanII	GRGCYC	1 cut(s)	567
BbsI	GAAGAC	2 cut(s)	22, 177
Bbv12I	GWGCWC	1 cut(s)	567
BbvCI	CCTCAGC	1 cut(s)	614
BbvI	GCAGC	2 cut(s)	499, 622
BccI	CCATC	3 cut(s)	284, 579, 583
BciVI	GTATCC	1 cut(s)	454
BfaI	CTAG	2 cut(s)	60, 93
BfmI	CTRYAG	1 cut(s)	177
BfoI	RGCGCY	1 cut(s)	280
BfrI	CTTAAG	1 cut(s)	10
BfuI	GTATCC	1 cut(s)	454
BisI	GCNGC	4 cut(s)	275, 488, 611, 696
BlnI	CCTAGG	1 cut(s)	59
BlpI	GCTNAGC	1 cut(s)	566
BlsI	GCNGC	4 cut(s)	276, 489, 612, 697
BmiI	GGNNCC	1 cut(s)	699
BmsI	GCATC	4 cut(s)	114, 127, 196, 495
BpiI	GAAGAC	2 cut(s)	22, 177
Bpu10I	CCTNAGC	1 cut(s)	614
Bpu1102I	GCTNAGC	1 cut(s)	566
BpuEI	CTTGAG	2 cut(s)	500, 530
BsaBI	GATNNNNATC	1 cut(s)	150
BsaJI	CCNNGG	3 cut(s)	59, 269, 411
Bse118I	RCCGGY	1 cut(s)	674
Bse1I	ACTGG	1 cut(s)	454
Bse8I	GATNNNNATC	1 cut(s)	150
BseDI	CCNNGG	3 cut(s)	59, 269, 411
BseGI	GGATG	1 cut(s)	129
BseJI	GATNNNNATC	1 cut(s)	150
BseMII	CTCAG	3 cut(s)	580, 605, 670
BseNI	ACTGG	1 cut(s)	454
BseRI	GAGGAG	1 cut(s)	446
BseXI	GCAGC	2 cut(s)	499, 622
Bsh1236I	CGCG	1 cut(s)	191
BsiHKAI	GWGCWC	1 cut(s)	567
BsiSI	CCGG	1 cut(s)	675
BsmI	GAATGC	1 cut(s)	172
Bsp1286I	GDGCHC	1 cut(s)	567
Bsp143I	GATC	1 cut(s)	652
Bsp1720I	GCTNAGC	1 cut(s)	566
Bsp19I	CCATGG	1 cut(s)	411
BspACI	CCGC	4 cut(s)	189, 274, 552, 695
BspCNI	CTCAG	3 cut(s)	579, 606, 669
BspFNI	CGCG	1 cut(s)	191
BspLI	GGNNCC	1 cut(s)	699
BspPI	GGATC	1 cut(s)	660
BspTI	CTTAAG	1 cut(s)	10
BsrFI	RCCGGY	1 cut(s)	674
BsrI	ACTGG	1 cut(s)	454
BssAI	RCCGGY	1 cut(s)	674
BssECI	CCNNGG	3 cut(s)	59, 269, 411
BssMI	GATC	1 cut(s)	652
BssNAI	GTATAC	1 cut(s)	266
BssT1I	CCWWGG	3 cut(s)	59, 269, 411
Bst1107I	GTATAC	1 cut(s)	266
BstAFI	CTTAAG	1 cut(s)	10
BstAPI	GCANNNNNTGC	1 cut(s)	124
BstC8I	GCNNGC	4 cut(s)	216, 225, 422, 492
BstDEI	CTNAG	3 cut(s)	566, 614, 656
BstDSI	CCRYGG	1 cut(s)	411
BstF5I	GGATG	1 cut(s)	129
BstFNI	CGCG	1 cut(s)	191
BstH2I	RGCGCY	1 cut(s)	280
BstHHI	GCGC	2 cut(s)	41, 279
BstKTI	GATC	1 cut(s)	655
BstMBI	GATC	1 cut(s)	652
BstMWI	GCNNNNNNNGC	4 cut(s)	124, 215, 220, 224
BstSFI	CTRYAG	1 cut(s)	177
BstUI	CGCG	1 cut(s)	191
BstV1I	GCAGC	2 cut(s)	499, 622
BstV2I	GAAGAC	2 cut(s)	22, 177
BstX2I	RGATCY	1 cut(s)	652
BstYI	RGATCY	1 cut(s)	652
BstZ17I	GTATAC	1 cut(s)	266
BsuI	GTATCC	1 cut(s)	454
BtgI	CCRYGG	1 cut(s)	411
BtsCI	GGATG	1 cut(s)	129
BtsI	GCAGTG	1 cut(s)	216
BtsIMutI	CAGTG	1 cut(s)	216
Cac8I	GCNNGC	4 cut(s)	216, 225, 422, 492
CfoI	GCGC	2 cut(s)	41, 279
Cfr10I	RCCGGY	1 cut(s)	674
CseI	GACGC	1 cut(s)	652
CviAII	CATG	2 cut(s)	98, 412
DdeI	CTNAG	3 cut(s)	566, 614, 656
DpnI	GATC	1 cut(s)	654
DpnII	GATC	1 cut(s)	652
Ecl136II	GAGCTC	1 cut(s)	565
Eco130I	CCWWGG	3 cut(s)	59, 269, 411
Eco24I	GRGCYC	1 cut(s)	567
Eco53kI	GAGCTC	1 cut(s)	565
Eco57I	CTGAAG	3 cut(s)	13, 362, 654
EcoICRI	GAGCTC	1 cut(s)	565
EcoT14I	CCWWGG	3 cut(s)	59, 269, 411
EcoT38I	GRGCYC	1 cut(s)	567
ErhI	CCWWGG	3 cut(s)	59, 269, 411
FaeI	CATG	2 cut(s)	101, 415
FaiI	YATR	9 cut(s)	37, 99, 179, 266, 312, 314, 335, 413, 530
FalI	AAGNNNNNCTT	2 cut(s)	652, 684
FatI	CATG	2 cut(s)	97, 411
FauI	CCCGC	1 cut(s)	545
FblI	GTMKAC	1 cut(s)	265
Fnu4HI	GCNGC	4 cut(s)	275, 488, 611, 696
FokI	GGATG	1 cut(s)	136
FriOI	GRGCYC	1 cut(s)	567
Fsp4HI	GCNGC	4 cut(s)	275, 488, 611, 696
FspBI	CTAG	2 cut(s)	60, 93
GlaI	GCGC	2 cut(s)	40, 278
GluI	GCNGC	4 cut(s)	275, 488, 611, 696
HaeII	RGCGCY	1 cut(s)	280
HapII	CCGG	1 cut(s)	675
HgaI	GACGC	1 cut(s)	652
HhaI	GCGC	2 cut(s)	41, 279
Hin1II	CATG	2 cut(s)	101, 415
Hin6I	GCGC	2 cut(s)	39, 277
HinP1I	GCGC	2 cut(s)	39, 277
HinfI	GANTC	3 cut(s)	248, 365, 689
HpaII	CCGG	1 cut(s)	675
HphI	GGTGA	5 cut(s)	16, 193, 464, 598, 605
Hpy166II	GTNNAC	1 cut(s)	266
Hpy188I	TCNGA	4 cut(s)	32, 77, 123, 659
Hpy188III	TCNNGA	1 cut(s)	252
Hpy8I	GTNNAC	1 cut(s)	266
Hpy99I	CGWCG	1 cut(s)	668
HpyAV	CCTTC	2 cut(s)	187, 386
HpyF10VI	GCNNNNNNNGC	4 cut(s)	124, 215, 220, 224
HpyF3I	CTNAG	3 cut(s)	566, 614, 656
Hsp92II	CATG	2 cut(s)	101, 415
HspAI	GCGC	2 cut(s)	39, 277
Kzo9I	GATC	1 cut(s)	652
LmnI	GCTCC	1 cut(s)	703
Lsp1109I	GCAGC	2 cut(s)	499, 622
LweI	GCATC	4 cut(s)	114, 127, 196, 495
MaeI	CTAG	2 cut(s)	60, 93
MaeIII	GTNAC	1 cut(s)	68
MalI	GATC	1 cut(s)	654
MboI	GATC	1 cut(s)	652
MboII	GAAGA	3 cut(s)	27, 57, 177
MflI	RGATCY	1 cut(s)	652
MhlI	GDGCHC	1 cut(s)	567
MluCI	AATT	1 cut(s)	521
MlyI	GAGTC	1 cut(s)	257
MnlI	CCTC	6 cut(s)	156, 384, 424, 609, 643, 679
MroXI	GAANNNNTTC	1 cut(s)	197
MseI	TTAA	1 cut(s)	11
MspA1I	CMGCKG	1 cut(s)	613
MspCI	CTTAAG	1 cut(s)	10
MspI	CCGG	1 cut(s)	675
Mva1269I	GAATGC	1 cut(s)	172
MvnI	CGCG	1 cut(s)	191
MwoI	GCNNNNNNNGC	4 cut(s)	124, 215, 220, 224
NcoI	CCATGG	1 cut(s)	411
NdeII	GATC	1 cut(s)	652
NlaIII	CATG	2 cut(s)	101, 415
NlaIV	GGNNCC	1 cut(s)	699
NmuCI	GTSAC	1 cut(s)	68
PctI	GAATGC	1 cut(s)	172
PdmI	GAANNNNTTC	1 cut(s)	197
PfeI	GAWTC	2 cut(s)	365, 689
PkrI	GCNGC	4 cut(s)	276, 489, 612, 697
PleI	GAGTC	1 cut(s)	256
PpsI	GAGTC	1 cut(s)	256
Psp124BI	GAGCTC	1 cut(s)	567
PspN4I	GGNNCC	1 cut(s)	699
PsuI	RGATCY	1 cut(s)	652
PvuII	CAGCTG	1 cut(s)	613
SacI	GAGCTC	1 cut(s)	567
SaqAI	TTAA	1 cut(s)	11
SatI	GCNGC	4 cut(s)	275, 488, 611, 696
Sau3AI	GATC	1 cut(s)	652
SchI	GAGTC	1 cut(s)	257
SduI	GDGCHC	1 cut(s)	567
SfaNI	GCATC	4 cut(s)	114, 127, 196, 495
SfcI	CTRYAG	1 cut(s)	177
SmlI	CTYRAG	3 cut(s)	10, 479, 509
SmoI	CTYRAG	3 cut(s)	10, 479, 509
Sse9I	AATT	1 cut(s)	521
SsiI	CCGC	4 cut(s)	189, 274, 552, 695
SspMI	CTAG	2 cut(s)	60, 93
SstI	GAGCTC	1 cut(s)	567
StyI	CCWWGG	3 cut(s)	59, 269, 411
TasI	AATT	1 cut(s)	521
TauI	GCSGC	2 cut(s)	277, 698
TfiI	GAWTC	2 cut(s)	365, 689
Tru1I	TTAA	1 cut(s)	11
Tru9I	TTAA	1 cut(s)	11
TscAI	CASTG	1 cut(s)	216
TseFI	GTSAC	1 cut(s)	68
TseI	GCWGC	2 cut(s)	487, 610
Tsp45I	GTSAC	1 cut(s)	68
TspRI	CASTG	1 cut(s)	216
Vha464I	CTTAAG	1 cut(s)	10
XmaJI	CCTAGG	1 cut(s)	59
XmiI	GTMKAC	1 cut(s)	265
XmnI	GAANNNNTTC	1 cut(s)	197
XspI	CTAG	2 cut(s)	60, 93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.