Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0002266

Physical Location & Seq

Genomic Coordinates Forward (+)

18889593 .. 18893192

Gene Structure 3600 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G198200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGGAATCAGCCATGGTGAGCATAAGAAGAAGCAAACGCTTGAGACTACGCGCCGAGAGAAGTTCTGTTCTAGCACCATTGCCAAGGTTTTGTGACAAGGGAACTGCTCCTCAAAATTCTACCCAAACAAAACCAGATAGTGTGCATCCAATGCCTTCAAATGATGTAAGTCTGCCAGAGGGGAATGCAACTCGTACGAGGGCTTCCCCTGAGATTATCAGTATGTTGAGAGAGCCAGCTGCTGCAGAGAGAGTTTTGCTGGGCTTACTTGGCCCTGATGATACCAGGATTATGCAGGAGTATGATGACGGTGGTTTGAGGCAAAACTTGGCCCACCATGCCCTTGGTGCCTGCCTTCACTTTGCCATGTGGCTAAAGGAAAATGGAGAGTCTTCCTTAGCCTCTAGGGAGCGCAATGAAGCCAGAGCTCGTGTTGCAGGGCTGGAGGAAAGAGTTAGACATGTTGAGGAGATTCTGAGGCATCTGGTCCAAGAATATGAGTCTAAGCTAAATGGCCTGCAAAATAATGTTGATCAGCTGAGGCCGAAGGCTGAGTTCTGCAAGAGGAAATGGAAGGAGCAGGAGGCGTTGCATCAAGAGAAGGCCACTCGTTTGGAAGAGGTTTTGAAGCAGCTTGAGGAAGCTAACTCCGACCTTGCCAAGGTCACTCAAAGTCATGACATGGCAAGAACGCGTATCGAAAAGCTGACTAGTGCCCTCACTCGGAGCAGGAAGCTCTACGAGCAGGCTGAGGTTGAAGTGAAGAAGGTTCAGCAGGACTGCGAAATGGATAGGATCCTTGGGGAAATAGAGAAGGAAGAGCGTGGGAAAAAAAGGATTGCTCTGACCACCGAGCTAGAGCTGGTAGAGGGCTTCCAAAACCAAAACCAGAAGATGGAAGGTGGGATCATGCCAACACCGGAGCTAAACAAAGATGTTAGCAAGCAAGTGGAAGAAGCTGAAGACATTGATGAACTGGTGGACGTTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

331

Amino Acids

37.59

Weight (kDa)

5.69

Isoelectric Point (pI)

56.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002266)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g18500 FvH4_2g18510 FvH4_2g18510 FvH4_2g18510 FvH4_2g18510 FvH4_2g18510
malus_domestica	MD05G1170700.v1.1
prunus_persica	Prupe.8G198000_v2.0.a1 Prupe.8G198100_v2.0.a1 Prupe.8G198200_v2.0.a1 Prupe.8G198200_v2.0.a1 Prupe.8G198300_v2.0.a1 Prupe.8G198400_v2.0.a1
pyrus_communis	pycom05g15790
rosa_chinensis	RchiOBHm_Chr6g0284021 RchiOBHm_Chr6g0284061
rosa_laevigata	RLG00000012773 RLG00000012776
rosa_multiflora	Rmu_sc0003102.1_g000003 Rmu_sc0015649.1_g000013 Rmu_ssc0000442.1_g000043
rosa_roxburghii	Rroxscaffold_7G00183920 Rroxscaffold_7G00184970
rosa_rugosa	Rorug06G0159400 Rorug06G0159500 Rorug06G0159600 Rorug06G0160100
rosa_samantha	Rh6AG272700 Rh6AG272800 Rh6AG272900 Rh6AG273200 Rh6BG273300 Rh6BG273700 Rh6BG273800 Rh6CG274500 Rh6CG274600 Rh6CG274700 Rh6CG275300 Rh6CG283300 Rh6DG267700 Rh6DG268200
rosa_wichuraiana	Rw6G023480 Rw6G023510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	347
AccB7I	CCANNNNNTGG	1 cut(s)	895
AccII	CGCG	2 cut(s)	51, 694
AclWI	GGATC	3 cut(s)	790, 803, 914
AcsI	RAATTY	1 cut(s)	115
AcuI	CTGAAG	1 cut(s)	981
AfaI	GTAC	1 cut(s)	196
AfiI	CCNNNNNNNGG	3 cut(s)	661, 723, 895
AflIII	ACRYGT	2 cut(s)	460, 692
AgsI	TTSAA	3 cut(s)	159, 628, 758
AhlI	ACTAGT	1 cut(s)	710
AjnI	CCWGG	1 cut(s)	284
Alw21I	GWGCWC	1 cut(s)	430
Alw26I	GTCTC	1 cut(s)	37
AlwI	GGATC	3 cut(s)	790, 803, 914
AlwNI	CAGNNNCTG	1 cut(s)	242
AoxI	GGCC	5 cut(s)	271, 330, 514, 542, 603
ApeKI	GCWGC	3 cut(s)	239, 242, 631
ApoI	RAATTY	1 cut(s)	115
AspLEI	GCGC	2 cut(s)	53, 414
AspS9I	GGNCC	3 cut(s)	272, 331, 487
AsuHPI	GGTGA	1 cut(s)	28
AvaII	GGWCC	1 cut(s)	487
BaeGI	GKGCMC	1 cut(s)	718
BamHI	GGATCC	1 cut(s)	795
BanI	GGYRCC	1 cut(s)	347
BanII	GRGCYC	1 cut(s)	430
BarI	GAAGNNNNNNTAC	2 cut(s)	187, 219
BauI	CACGAG	1 cut(s)	429
BbsI	GAAGAC	2 cut(s)	384, 969
Bbv12I	GWGCWC	1 cut(s)	430
BbvCI	CCTCAGC	2 cut(s)	539, 750
BbvI	GCAGC	3 cut(s)	226, 229, 643
BccI	CCATC	1 cut(s)	889
BciT130I	CCWGG	1 cut(s)	286
BclI	TGATCA	1 cut(s)	532
BcoDI	GTCTC	1 cut(s)	37
BcuI	ACTAGT	1 cut(s)	710
BfaI	CTAG	5 cut(s)	71, 405, 711, 857, 991
BfmI	CTRYAG	1 cut(s)	243
BisI	GCNGC	3 cut(s)	240, 243, 632
BlsI	GCNGC	3 cut(s)	241, 244, 633
Bme1390I	CCNGG	1 cut(s)	286
Bme18I	GGWCC	1 cut(s)	487
BmgT120I	GGNCC	3 cut(s)	272, 331, 487
BmiI	GGNNCC	2 cut(s)	349, 797
BmrFI	CCNGG	1 cut(s)	286
BmsI	GCATC	3 cut(s)	154, 490, 601
BpiI	GAAGAC	2 cut(s)	384, 969
BpmI	CTGGAG	1 cut(s)	464
Bpu10I	CCTNAGC	3 cut(s)	397, 539, 750
BpuEI	CTTGAG	2 cut(s)	61, 656
BsaJI	CCNNGG	5 cut(s)	12, 83, 343, 660, 799
BsaWI	WCCGGW	1 cut(s)	919
Bsc4I	CCNNNNNNNGG	3 cut(s)	661, 723, 895
Bse1I	ACTGG	1 cut(s)	981
Bse3DI	GCAATG	2 cut(s)	77, 421
BseBI	CCWGG	1 cut(s)	286
BseDI	CCNNGG	5 cut(s)	12, 83, 343, 660, 799
BseGI	GGATG	1 cut(s)	145
BseLI	CCNNNNNNNGG	3 cut(s)	661, 723, 895
BseMI	GCAATG	2 cut(s)	77, 421
BseMII	CTCAG	5 cut(s)	201, 467, 530, 543, 741
BseNI	ACTGG	1 cut(s)	981
BseRI	GAGGAG	2 cut(s)	99, 482
BseSI	GKGCMC	1 cut(s)	718
BseXI	GCAGC	3 cut(s)	226, 229, 643
BseYI	CCCAGC	1 cut(s)	259
Bsh1236I	CGCG	2 cut(s)	51, 694
BshFI	GGCC	5 cut(s)	273, 332, 516, 544, 605
BshNI	GGYRCC	1 cut(s)	347
BsiHKAI	GWGCWC	1 cut(s)	430
BsiSI	CCGG	1 cut(s)	920
BsiWI	CGTACG	1 cut(s)	194
BslI	CCNNNNNNNGG	3 cut(s)	661, 723, 895
BsmAI	GTCTC	1 cut(s)	37
BsmI	GAATGC	1 cut(s)	190
BsnI	GGCC	5 cut(s)	273, 332, 516, 544, 605
Bsp1286I	GDGCHC	2 cut(s)	430, 718
Bsp143I	GATC	3 cut(s)	532, 795, 906
Bsp19I	CCATGG	1 cut(s)	12
BspANI	GGCC	5 cut(s)	273, 332, 516, 544, 605
BspCNI	CTCAG	5 cut(s)	202, 468, 531, 544, 742
BspFNI	CGCG	2 cut(s)	51, 694
BspHI	TCATGA	1 cut(s)	676
BspLI	GGNNCC	2 cut(s)	349, 797
BspMAI	CTGCAG	1 cut(s)	247
BspPI	GGATC	3 cut(s)	790, 803, 914
BspQI	GCTCTTC	1 cut(s)	813
BspT107I	GGYRCC	1 cut(s)	347
BsrDI	GCAATG	2 cut(s)	77, 421
BsrI	ACTGG	1 cut(s)	981
BssECI	CCNNGG	5 cut(s)	12, 83, 343, 660, 799
BssMI	GATC	3 cut(s)	532, 795, 906
BssSI	CACGAG	1 cut(s)	429
BssT1I	CCWWGG	5 cut(s)	12, 83, 343, 660, 799
Bst2BI	CACGAG	1 cut(s)	429
Bst2UI	CCWGG	1 cut(s)	286
Bst4CI	ACNGT	1 cut(s)	311
Bst6I	CTCTTC	2 cut(s)	612, 813
BstAPI	GCANNNNNTGC	1 cut(s)	151
BstC8I	GCNNGC	5 cut(s)	237, 352, 518, 747, 944
BstDEI	CTNAG	7 cut(s)	210, 397, 476, 504, 539, 552, 750
BstDSI	CCRYGG	1 cut(s)	12
BstENI	CCTNNNNNAGG	1 cut(s)	659
BstF5I	GGATG	1 cut(s)	145
BstFNI	CGCG	2 cut(s)	51, 694
BstHHI	GCGC	2 cut(s)	53, 414
BstKTI	GATC	3 cut(s)	535, 798, 909
BstMAI	GTCTC	1 cut(s)	37
BstMBI	GATC	3 cut(s)	532, 795, 906
BstMWI	GCNNNNNNNGC	6 cut(s)	151, 270, 338, 347, 434, 742
BstNI	CCWGG	1 cut(s)	286
BstNSI	RCATGY	1 cut(s)	464
BstSCI	CCNGG	1 cut(s)	284
BstSFI	CTRYAG	1 cut(s)	243
BstSLI	GKGCMC	1 cut(s)	718
BstUI	CGCG	2 cut(s)	51, 694
BstV1I	GCAGC	3 cut(s)	226, 229, 643
BstV2I	GAAGAC	2 cut(s)	384, 969
BstX2I	RGATCY	1 cut(s)	795
BstXI	CCANNNNNNTGG	2 cut(s)	344, 613
BstYI	RGATCY	1 cut(s)	795
BsuRI	GGCC	5 cut(s)	273, 332, 516, 544, 605
BtgI	CCRYGG	1 cut(s)	12
BtsCI	GGATG	1 cut(s)	145
Cac8I	GCNNGC	5 cut(s)	237, 352, 518, 747, 944
CaiI	CAGNNNCTG	1 cut(s)	242
CciI	TCATGA	1 cut(s)	676
CfoI	GCGC	2 cut(s)	53, 414
Cfr13I	GGNCC	3 cut(s)	272, 331, 487
Csp6I	GTAC	1 cut(s)	195
CviAII	CATG	7 cut(s)	13, 338, 367, 461, 677, 682, 910
CviQI	GTAC	1 cut(s)	195
DdeI	CTNAG	7 cut(s)	210, 397, 476, 504, 539, 552, 750
DpnI	GATC	3 cut(s)	534, 797, 908
DpnII	GATC	3 cut(s)	532, 795, 906
Eam1104I	CTCTTC	2 cut(s)	612, 813
EarI	CTCTTC	2 cut(s)	612, 813
Ecl136II	GAGCTC	1 cut(s)	428
Eco130I	CCWWGG	5 cut(s)	12, 83, 343, 660, 799
Eco24I	GRGCYC	1 cut(s)	430
Eco47I	GGWCC	1 cut(s)	487
Eco53kI	GAGCTC	1 cut(s)	428
Eco57I	CTGAAG	1 cut(s)	981
EcoICRI	GAGCTC	1 cut(s)	428
EcoNI	CCTNNNNNAGG	1 cut(s)	659
EcoRII	CCWGG	1 cut(s)	284
EcoT14I	CCWWGG	5 cut(s)	12, 83, 343, 660, 799
EcoT38I	GRGCYC	1 cut(s)	430
ErhI	CCWWGG	5 cut(s)	12, 83, 343, 660, 799
FaeI	CATG	7 cut(s)	16, 341, 370, 464, 680, 685, 913
FatI	CATG	7 cut(s)	12, 337, 366, 460, 676, 681, 909
FbaI	TGATCA	1 cut(s)	532
Fnu4HI	GCNGC	3 cut(s)	240, 243, 632
FokI	GGATG	1 cut(s)	132
FriOI	GRGCYC	1 cut(s)	430
Fsp4HI	GCNGC	3 cut(s)	240, 243, 632
FspBI	CTAG	5 cut(s)	71, 405, 711, 857, 991
GlaI	GCGC	2 cut(s)	52, 413
GluI	GCNGC	3 cut(s)	240, 243, 632
GsaI	CCCAGC	1 cut(s)	263
GsuI	CTGGAG	1 cut(s)	464
HaeIII	GGCC	5 cut(s)	273, 332, 516, 544, 605
HapII	CCGG	1 cut(s)	920
HhaI	GCGC	2 cut(s)	53, 414
Hin1II	CATG	7 cut(s)	16, 341, 370, 464, 680, 685, 913
Hin6I	GCGC	2 cut(s)	51, 412
HinP1I	GCGC	2 cut(s)	51, 412
HincII	GTYRAC	1 cut(s)	988
HindII	GTYRAC	1 cut(s)	988
HinfI	GANTC	4 cut(s)	5, 389, 472, 500
HpaII	CCGG	1 cut(s)	920
HphI	GGTGA	1 cut(s)	28
Hpy166II	GTNNAC	2 cut(s)	982, 988
Hpy188I	TCNGA	4 cut(s)	477, 652, 726, 846
Hpy188III	TCNNGA	2 cut(s)	596, 677
Hpy8I	GTNNAC	2 cut(s)	982, 988
HpyAV	CCTTC	8 cut(s)	165, 365, 541, 568, 595, 760, 808, 893
HpyCH4III	ACNGT	1 cut(s)	311
HpyCH4IV	ACGT	1 cut(s)	984
HpyCH4V	TGCA	8 cut(s)	145, 188, 245, 295, 437, 520, 561, 592
HpyF10VI	GCNNNNNNNGC	6 cut(s)	151, 270, 338, 347, 434, 742
HpyF3I	CTNAG	7 cut(s)	210, 397, 476, 504, 539, 552, 750
HpySE526I	ACGT	1 cut(s)	984
Hsp92II	CATG	7 cut(s)	16, 341, 370, 464, 680, 685, 913
HspAI	GCGC	2 cut(s)	51, 412
Ksp22I	TGATCA	1 cut(s)	532
Kzo9I	GATC	3 cut(s)	532, 795, 906
LguI	GCTCTTC	1 cut(s)	813
LmnI	GCTCC	5 cut(s)	112, 409, 577, 726, 922
Lsp1109I	GCAGC	3 cut(s)	226, 229, 643
LweI	GCATC	3 cut(s)	154, 490, 601
MaeI	CTAG	5 cut(s)	71, 405, 711, 857, 991
MaeII	ACGT	1 cut(s)	984
MaeIII	GTNAC	2 cut(s)	92, 664
MalI	GATC	3 cut(s)	534, 797, 908
MboI	GATC	3 cut(s)	532, 795, 906
MboII	GAAGA	8 cut(s)	39, 384, 629, 775, 830, 904, 965, 974
MflI	RGATCY	1 cut(s)	795
MhlI	GDGCHC	2 cut(s)	430, 718
MluCI	AATT	1 cut(s)	115
MluI	ACGCGT	1 cut(s)	692
MlyI	GAGTC	2 cut(s)	398, 509
MmeI	TCCRAC	1 cut(s)	675
MspA1I	CMGCKG	2 cut(s)	239, 538
MspI	CCGG	1 cut(s)	920
MspR9I	CCNGG	1 cut(s)	286
Mva1269I	GAATGC	1 cut(s)	190
MvaI	CCWGG	1 cut(s)	286
MvnI	CGCG	2 cut(s)	51, 694
MwoI	GCNNNNNNNGC	6 cut(s)	151, 270, 338, 347, 434, 742
NcoI	CCATGG	1 cut(s)	12
NdeII	GATC	3 cut(s)	532, 795, 906
NlaIII	CATG	7 cut(s)	16, 341, 370, 464, 680, 685, 913
NlaIV	GGNNCC	2 cut(s)	349, 797
NmeAIII	GCCGAG	1 cut(s)	79
NmuCI	GTSAC	2 cut(s)	92, 664
NspI	RCATGY	1 cut(s)	464
PagI	TCATGA	1 cut(s)	676
PciI	ACATGT	1 cut(s)	460
PciSI	GCTCTTC	1 cut(s)	813
PctI	GAATGC	1 cut(s)	190
PfeI	GAWTC	2 cut(s)	5, 472
Pfl23II	CGTACG	1 cut(s)	194
PflMI	CCANNNNNTGG	1 cut(s)	895
PkrI	GCNGC	3 cut(s)	241, 244, 633
PleI	GAGTC	2 cut(s)	397, 508
PpsI	GAGTC	2 cut(s)	397, 508
PscI	ACATGT	1 cut(s)	460
Psp124BI	GAGCTC	1 cut(s)	430
Psp6I	CCWGG	1 cut(s)	284
PspFI	CCCAGC	1 cut(s)	259
PspGI	CCWGG	1 cut(s)	284
PspLI	CGTACG	1 cut(s)	194
PspN4I	GGNNCC	2 cut(s)	349, 797
PspPI	GGNCC	3 cut(s)	272, 331, 487
PstI	CTGCAG	1 cut(s)	247
PstNI	CAGNNNCTG	1 cut(s)	242
PsuI	RGATCY	1 cut(s)	795
PvuII	CAGCTG	2 cut(s)	239, 538
RsaI	GTAC	1 cut(s)	196
RsaNI	GTAC	1 cut(s)	195
SacI	GAGCTC	1 cut(s)	430
SapI	GCTCTTC	1 cut(s)	813
SatI	GCNGC	3 cut(s)	240, 243, 632
Sau3AI	GATC	3 cut(s)	532, 795, 906
Sau96I	GGNCC	3 cut(s)	272, 331, 487
SchI	GAGTC	2 cut(s)	398, 509
ScrFI	CCNGG	1 cut(s)	286
SduI	GDGCHC	2 cut(s)	430, 718
SfaNI	GCATC	3 cut(s)	154, 490, 601
SfcI	CTRYAG	1 cut(s)	243
SinI	GGWCC	1 cut(s)	487
SmlI	CTYRAG	2 cut(s)	40, 635
SmoI	CTYRAG	2 cut(s)	40, 635
SpeI	ACTAGT	1 cut(s)	710
Sse9I	AATT	1 cut(s)	115
SspMI	CTAG	5 cut(s)	71, 405, 711, 857, 991
SstI	GAGCTC	1 cut(s)	430
StyD4I	CCNGG	1 cut(s)	284
StyI	CCWWGG	5 cut(s)	12, 83, 343, 660, 799
TaaI	ACNGT	1 cut(s)	311
TaiI	ACGT	1 cut(s)	987
TaqI	TCGA	1 cut(s)	699
TasI	AATT	1 cut(s)	115
TfiI	GAWTC	2 cut(s)	5, 472
TseFI	GTSAC	2 cut(s)	92, 664
TseI	GCWGC	3 cut(s)	239, 242, 631
Tsp45I	GTSAC	2 cut(s)	92, 664
TspDTI	ATGAA	2 cut(s)	432, 987
Van91I	CCANNNNNTGG	1 cut(s)	895
VpaK11BI	GGWCC	1 cut(s)	487
XagI	CCTNNNNNAGG	1 cut(s)	659
XapI	RAATTY	1 cut(s)	115
XceI	RCATGY	1 cut(s)	464
XcmI	CCANNNNNNNNNTGG	1 cut(s)	341
XspI	CTAG	5 cut(s)	71, 405, 711, 857, 991

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.