Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0002266

Physical Location & Seq

Genomic Coordinates Forward (+)

45069482 .. 45072816

Gene Structure 3335 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG274500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGCCTTCCAGACCTTCACTGCCTCCTGTGGAGTAATGTGCCACGTACACAACAATGGCGAACGAGTGAGCTCTCTGGTAATGGATTTGGAATCAACCATGGTGAGCTTAAGAAGACAGAAACGCTTGAGGCCATGCTCTGGAAGTAGTTCGGGTGTAGCTTCACTTCCTGGTTTTTGTGACAATGGAACTTCTCTTCAAGCTTCTACCCAGGAAAAACCTAATAATGTGCATCTCACACCTTCAAACAATGCTTCCCAAAATGAATCATTGAGAGACCCAGCAGCTGCTGAGAGGGTTTTGCTGGACCTACTTGGCCCTGCTGATACCAAGATTATGCAGGCGTATGCTGACTGCGGTCTGAAGCAGAACTTAGCTCACCATGCCCTTGCCTCCTGCGGCTCCTGCCTCCATATTGCTATGTGGCTAAGGGTTACTGGGGATGCCTCTAAGGAGCGAGGTGAAGCAATAGCTCGTGTTGCAGAGCTGGAGAAAAGAGTTGGAAACTTTGTAGAAACCACTACCAAACAGGAGGCAGTAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

181

Amino Acids

19.44

Weight (kDa)

6.99

Isoelectric Point (pI)

45.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002266)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g18500 FvH4_2g18510 FvH4_2g18510 FvH4_2g18510 FvH4_2g18510 FvH4_2g18510
malus_domestica	MD05G1170700.v1.1
prunus_persica	Prupe.8G198000_v2.0.a1 Prupe.8G198100_v2.0.a1 Prupe.8G198200_v2.0.a1 Prupe.8G198200_v2.0.a1 Prupe.8G198300_v2.0.a1 Prupe.8G198400_v2.0.a1
pyrus_communis	pycom05g15790
rosa_chinensis	RchiOBHm_Chr6g0284021 RchiOBHm_Chr6g0284061
rosa_laevigata	RLG00000012773 RLG00000012776
rosa_multiflora	Rmu_sc0003102.1_g000003 Rmu_sc0015649.1_g000013 Rmu_ssc0000442.1_g000043
rosa_roxburghii	Rroxscaffold_7G00183920 Rroxscaffold_7G00184970
rosa_rugosa	Rorug06G0159400 Rorug06G0159500 Rorug06G0159600 Rorug06G0160100
rosa_samantha	Rh6AG272700 Rh6AG272800 Rh6AG272900 Rh6AG273200 Rh6BG273300 Rh6BG273700 Rh6BG273800 Rh6CG274500 Rh6CG274600 Rh6CG274700 Rh6CG275300 Rh6CG283300 Rh6DG267700 Rh6DG268200
rosa_wichuraiana	Rw6G023480 Rw6G023510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	140
AciI	CCGC	2 cut(s)	357, 399
AcuI	CTGAAG	1 cut(s)	383
AfaI	GTAC	1 cut(s)	48
AfiI	CCNNNNNNNGG	1 cut(s)	140
AflII	CTTAAG	1 cut(s)	109
AgsI	TTSAA	2 cut(s)	200, 246
AjnI	CCWGG	2 cut(s)	169, 210
AluBI	AGCT	8 cut(s)	72, 108, 161, 203, 287, 377, 473, 487
AluI	AGCT	8 cut(s)	72, 108, 161, 203, 287, 377, 473, 487
Alw21I	GWGCWC	1 cut(s)	74
Alw26I	GTCTC	1 cut(s)	270
AlwNI	CAGNNNCTG	2 cut(s)	287, 290
AoxI	GGCC	3 cut(s)	3, 131, 316
ApeKI	GCWGC	2 cut(s)	284, 287
Asp700I	GAANNNNTTC	1 cut(s)	148
AspS9I	GGNCC	2 cut(s)	307, 317
AsuHPI	GGTGA	3 cut(s)	115, 371, 473
AvaII	GGWCC	1 cut(s)	307
BanII	GRGCYC	1 cut(s)	74
BarI	GAAGNNNNNNTAC	2 cut(s)	150, 182
BauI	CACGAG	1 cut(s)	474
BbsI	GAAGAC	1 cut(s)	121
Bbv12I	GWGCWC	1 cut(s)	74
BbvI	GCAGC	2 cut(s)	274, 296
BciT130I	CCWGG	2 cut(s)	171, 212
BcoDI	GTCTC	1 cut(s)	270
BfaI	CTAG	1 cut(s)	544
BfrI	CTTAAG	1 cut(s)	109
BisI	GCNGC	3 cut(s)	285, 288, 400
BlsI	GCNGC	3 cut(s)	286, 289, 401
Bme1390I	CCNGG	2 cut(s)	171, 212
Bme18I	GGWCC	1 cut(s)	307
BmgT120I	GGNCC	2 cut(s)	307, 317
BmiI	GGNNCC	1 cut(s)	403
BmrFI	CCNGG	2 cut(s)	171, 212
BmrI	ACTGGG	1 cut(s)	447
BmsI	GCATC	2 cut(s)	241, 433
BmuI	ACTGGG	1 cut(s)	447
BoxI	GACNNNNGTC	1 cut(s)	357
BpiI	GAAGAC	1 cut(s)	121
BpmI	CTGGAG	1 cut(s)	509
Bpu10I	CCTNAGC	1 cut(s)	428
BpuEI	CTTGAG	1 cut(s)	148
BsaAI	YACGTR	1 cut(s)	46
BsaI	GGTCTC	1 cut(s)	270
BsaJI	CCNNGG	2 cut(s)	99, 210
Bsc4I	CCNNNNNNNGG	1 cut(s)	140
Bse1I	ACTGG	1 cut(s)	442
BseBI	CCWGG	2 cut(s)	171, 212
BseDI	CCNNGG	2 cut(s)	99, 210
BseGI	GGATG	1 cut(s)	448
BseLI	CCNNNNNNNGG	1 cut(s)	140
BseMII	CTCAG	1 cut(s)	282
BseNI	ACTGG	1 cut(s)	442
BseXI	GCAGC	2 cut(s)	274, 296
BseYI	CCCAGC	1 cut(s)	280
BshFI	GGCC	3 cut(s)	5, 133, 318
BsiHKAI	GWGCWC	1 cut(s)	74
BslI	CCNNNNNNNGG	1 cut(s)	140
BsmAI	GTCTC	1 cut(s)	270
BsnI	GGCC	3 cut(s)	5, 133, 318
Bso31I	GGTCTC	1 cut(s)	270
Bsp1286I	GDGCHC	1 cut(s)	74
Bsp19I	CCATGG	1 cut(s)	99
BspACI	CCGC	2 cut(s)	357, 399
BspANI	GGCC	3 cut(s)	5, 133, 318
BspCNI	CTCAG	1 cut(s)	283
BspLI	GGNNCC	1 cut(s)	403
BspTI	CTTAAG	1 cut(s)	109
BspTNI	GGTCTC	1 cut(s)	270
BsrI	ACTGG	1 cut(s)	442
BssECI	CCNNGG	2 cut(s)	99, 210
BssSI	CACGAG	1 cut(s)	474
BssT1I	CCWWGG	1 cut(s)	99
Bst2BI	CACGAG	1 cut(s)	474
Bst2UI	CCWGG	2 cut(s)	171, 212
Bst6I	CTCTTC	1 cut(s)	201
BstAFI	CTTAAG	1 cut(s)	109
BstBAI	YACGTR	1 cut(s)	46
BstC8I	GCNNGC	1 cut(s)	342
BstDEI	CTNAG	4 cut(s)	291, 373, 428, 450
BstDSI	CCRYGG	1 cut(s)	99
BstF5I	GGATG	1 cut(s)	448
BstMAI	GTCTC	1 cut(s)	270
BstMWI	GCNNNNNNNGC	3 cut(s)	383, 405, 479
BstNI	CCWGG	2 cut(s)	171, 212
BstPAI	GACNNNNGTC	1 cut(s)	357
BstSCI	CCNGG	2 cut(s)	169, 210
BstV1I	GCAGC	2 cut(s)	274, 296
BstV2I	GAAGAC	1 cut(s)	121
BsuRI	GGCC	3 cut(s)	5, 133, 318
BtgI	CCRYGG	1 cut(s)	99
BtsCI	GGATG	1 cut(s)	448
BtsI	GCAGTG	1 cut(s)	18
BtsIMutI	CAGTG	1 cut(s)	18
Cac8I	GCNNGC	1 cut(s)	342
CaiI	CAGNNNCTG	2 cut(s)	287, 290
Cfr13I	GGNCC	2 cut(s)	307, 317
Csp6I	GTAC	1 cut(s)	47
CviAII	CATG	3 cut(s)	100, 135, 383
CviQI	GTAC	1 cut(s)	47
DdeI	CTNAG	4 cut(s)	291, 373, 428, 450
Eam1104I	CTCTTC	1 cut(s)	201
EarI	CTCTTC	1 cut(s)	201
Ecl136II	GAGCTC	1 cut(s)	72
Eco130I	CCWWGG	1 cut(s)	99
Eco24I	GRGCYC	1 cut(s)	74
Eco31I	GGTCTC	1 cut(s)	270
Eco47I	GGWCC	1 cut(s)	307
Eco53kI	GAGCTC	1 cut(s)	72
Eco57I	CTGAAG	1 cut(s)	383
EcoICRI	GAGCTC	1 cut(s)	72
EcoRII	CCWGG	2 cut(s)	169, 210
EcoT14I	CCWWGG	1 cut(s)	99
EcoT38I	GRGCYC	1 cut(s)	74
ErhI	CCWWGG	1 cut(s)	99
FaeI	CATG	3 cut(s)	103, 138, 386
FaiI	YATR	7 cut(s)	101, 136, 338, 348, 384, 414, 422
FalI	AAGNNNNNCTT	2 cut(s)	356, 388
FatI	CATG	3 cut(s)	99, 134, 382
Fnu4HI	GCNGC	3 cut(s)	285, 288, 400
FokI	GGATG	1 cut(s)	455
FriOI	GRGCYC	1 cut(s)	74
Fsp4HI	GCNGC	3 cut(s)	285, 288, 400
FspBI	CTAG	1 cut(s)	544
GluI	GCNGC	3 cut(s)	285, 288, 400
GsaI	CCCAGC	1 cut(s)	284
GsuI	CTGGAG	1 cut(s)	509
HaeIII	GGCC	3 cut(s)	5, 133, 318
Hin1II	CATG	3 cut(s)	103, 138, 386
HindIII	AAGCTT	1 cut(s)	201
HinfI	GANTC	2 cut(s)	92, 266
HphI	GGTGA	3 cut(s)	115, 371, 473
Hpy166II	GTNNAC	1 cut(s)	49
Hpy188I	TCNGA	1 cut(s)	363
Hpy188III	TCNNGA	2 cut(s)	10, 141
Hpy8I	GTNNAC	1 cut(s)	49
HpyAV	CCTTC	3 cut(s)	16, 25, 252
HpyCH4IV	ACGT	1 cut(s)	45
HpyCH4V	TGCA	3 cut(s)	232, 340, 482
HpyF10VI	GCNNNNNNNGC	3 cut(s)	383, 405, 479
HpyF3I	CTNAG	4 cut(s)	291, 373, 428, 450
HpySE526I	ACGT	1 cut(s)	45
Hsp92II	CATG	3 cut(s)	103, 138, 386
LmnI	GCTCC	2 cut(s)	407, 454
Lsp1109I	GCAGC	2 cut(s)	274, 296
LweI	GCATC	2 cut(s)	241, 433
MaeI	CTAG	1 cut(s)	544
MaeII	ACGT	1 cut(s)	45
MaeIII	GTNAC	2 cut(s)	179, 433
MboII	GAAGA	2 cut(s)	126, 188
MhlI	GDGCHC	1 cut(s)	74
MmeI	TCCRAC	1 cut(s)	481
MnlI	CCTC	8 cut(s)	34, 123, 288, 403, 419, 452, 457, 526
MroXI	GAANNNNTTC	1 cut(s)	148
MseI	TTAA	1 cut(s)	110
MslI	CAYNNNNRTG	1 cut(s)	54
MspA1I	CMGCKG	1 cut(s)	287
MspCI	CTTAAG	1 cut(s)	109
MspR9I	CCNGG	2 cut(s)	171, 212
MvaI	CCWGG	2 cut(s)	171, 212
MwoI	GCNNNNNNNGC	3 cut(s)	383, 405, 479
NcoI	CCATGG	1 cut(s)	99
NlaIII	CATG	3 cut(s)	103, 138, 386
NlaIV	GGNNCC	1 cut(s)	403
NmuCI	GTSAC	1 cut(s)	179
PdmI	GAANNNNTTC	1 cut(s)	148
PfeI	GAWTC	2 cut(s)	92, 266
PflMI	CCANNNNNTGG	1 cut(s)	140
PkrI	GCNGC	3 cut(s)	286, 289, 401
Ppu21I	YACGTR	1 cut(s)	46
PshAI	GACNNNNGTC	1 cut(s)	357
Psp124BI	GAGCTC	1 cut(s)	74
Psp6I	CCWGG	2 cut(s)	169, 210
PspFI	CCCAGC	1 cut(s)	280
PspGI	CCWGG	2 cut(s)	169, 210
PspN4I	GGNNCC	1 cut(s)	403
PspPI	GGNCC	2 cut(s)	307, 317
PstNI	CAGNNNCTG	2 cut(s)	287, 290
PvuII	CAGCTG	1 cut(s)	287
RsaI	GTAC	1 cut(s)	48
RsaNI	GTAC	1 cut(s)	47
RseI	CAYNNNNRTG	1 cut(s)	54
SacI	GAGCTC	1 cut(s)	74
SaqAI	TTAA	1 cut(s)	110
SatI	GCNGC	3 cut(s)	285, 288, 400
Sau96I	GGNCC	2 cut(s)	307, 317
ScrFI	CCNGG	2 cut(s)	171, 212
SduI	GDGCHC	1 cut(s)	74
SfaNI	GCATC	2 cut(s)	241, 433
SinI	GGWCC	1 cut(s)	307
SmiMI	CAYNNNNRTG	1 cut(s)	54
SmlI	CTYRAG	2 cut(s)	109, 127
SmoI	CTYRAG	2 cut(s)	109, 127
SsiI	CCGC	2 cut(s)	357, 399
SspMI	CTAG	1 cut(s)	544
SstI	GAGCTC	1 cut(s)	74
StyD4I	CCNGG	2 cut(s)	169, 210
StyI	CCWWGG	1 cut(s)	99
TaiI	ACGT	1 cut(s)	48
TauI	GCSGC	1 cut(s)	402
TfiI	GAWTC	2 cut(s)	92, 266
Tru1I	TTAA	1 cut(s)	110
Tru9I	TTAA	1 cut(s)	110
TscAI	CASTG	1 cut(s)	25
TseFI	GTSAC	1 cut(s)	179
TseI	GCWGC	2 cut(s)	284, 287
Tsp45I	GTSAC	1 cut(s)	179
TspDTI	ATGAA	1 cut(s)	279
TspRI	CASTG	1 cut(s)	25
Van91I	CCANNNNNTGG	1 cut(s)	140
Vha464I	CTTAAG	1 cut(s)	109
VpaK11BI	GGWCC	1 cut(s)	307
XmnI	GAANNNNTTC	1 cut(s)	148
XspI	CTAG	1 cut(s)	544

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.