Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0002266

Physical Location & Seq

Genomic Coordinates Forward (+)

46670988 .. 46677762

Gene Structure 6775 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG272700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGGAAGAGGATGGTATTTCTCCAAAGAAGATGAGGCTTAGTTTAGCTGTTGGAAGGACTAAACTGGATGCTATGACAATGGGGTTATGCACTGTGAAACCGGTCAAAGAAGTATTCAAGAAAAGGGGTAGACCGAAAGGAGCAAAGAACAAGACAAAGGAGCTCAAAGTTGTACAATCTTCACCTATGAAGAAGTCCCCGATTAAGAGAATCAAGACTCCAAGAAAGAAGGAGAGATTGGTGAATGGTTTGCCGGAATTCACCATAGTTGAGGCTGTCAATGGTTCTAACCAGTGTTACCTGGATCGCGGGTCGTTTAGGTACGGGTACGCGGCCTTCCAGACCTTCACTGCCTCCTGTGGAGTAATGTGCCACGTACACAACAATGGCGAACGAGTGAGCTCTCTGGTAATGGATTTGGAATCAACCATGGTGAGCTTAAGAAGACAGAAACGCTTGAGGCCATGCTCTGGAAGTAGTTCGGGTGTAGCTTCACTTCCTGGTTTTTGTGACAATGGAACTTCTCTTCAAGCTTCTACCCAGGAAAAACCTAATAATGTGCATCTCACACCTTCAAACAATGCTTCCCAAAATGAATCATTGAGAGACCCAGCAGCTGCTGAGAGGGTTTTGCTGGACCTACTTGGCCCTGCTGATACCAAGATTATGCAGGCGTATGCTGACTGCGGTCTGAAGCAGAACTTAGCTCACCATGCCCTTGCCTCCTGCGGCTCCTGCCTCCATATTGCTATGTGGCTAAGGGTTACTGGGGATGCCTCTAAGGAGCGAGGTGAAGCAATAGCTCGTGTTGCAGAGCTGGAGAAAAGAGTTGGAAACTTTGTAGAAACCACTACCAAACAGGAGGCAGTAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

291

Amino Acids

31.79

Weight (kDa)

9.63

Isoelectric Point (pI)

40.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002266)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g18500 FvH4_2g18510 FvH4_2g18510 FvH4_2g18510 FvH4_2g18510 FvH4_2g18510
malus_domestica	MD05G1170700.v1.1
prunus_persica	Prupe.8G198000_v2.0.a1 Prupe.8G198100_v2.0.a1 Prupe.8G198200_v2.0.a1 Prupe.8G198200_v2.0.a1 Prupe.8G198300_v2.0.a1 Prupe.8G198400_v2.0.a1
pyrus_communis	pycom05g15790
rosa_chinensis	RchiOBHm_Chr6g0284021 RchiOBHm_Chr6g0284061
rosa_laevigata	RLG00000012773 RLG00000012776
rosa_multiflora	Rmu_sc0003102.1_g000003 Rmu_sc0015649.1_g000013 Rmu_ssc0000442.1_g000043
rosa_roxburghii	Rroxscaffold_7G00183920 Rroxscaffold_7G00184970
rosa_rugosa	Rorug06G0159400 Rorug06G0159500 Rorug06G0159600 Rorug06G0160100
rosa_samantha	Rh6AG272700 Rh6AG272800 Rh6AG272900 Rh6AG273200 Rh6BG273300 Rh6BG273700 Rh6BG273800 Rh6CG274500 Rh6CG274600 Rh6CG274700 Rh6CG275300 Rh6CG283300 Rh6DG267700 Rh6DG268200
rosa_wichuraiana	Rw6G023480 Rw6G023510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	470
AccI	GTMKAC	1 cut(s)	130
AccII	CGCG	2 cut(s)	309, 332
AciI	CCGC	4 cut(s)	309, 332, 687, 729
AclWI	GGATC	1 cut(s)	312
AcsI	RAATTY	1 cut(s)	257
AcuI	CTGAAG	1 cut(s)	713
AfaI	GTAC	4 cut(s)	174, 323, 329, 378
AfiI	CCNNNNNNNGG	1 cut(s)	470
AflII	CTTAAG	1 cut(s)	439
AgeI	ACCGGT	1 cut(s)	100
AgsI	TTSAA	3 cut(s)	118, 530, 576
AjnI	CCWGG	3 cut(s)	300, 499, 540
AjuI	GAANNNNNNNTTGG	2 cut(s)	221, 253
Alw21I	GWGCWC	2 cut(s)	165, 404
Alw26I	GTCTC	1 cut(s)	600
AlwI	GGATC	1 cut(s)	312
AlwNI	CAGNNNCTG	2 cut(s)	617, 620
AoxI	GGCC	3 cut(s)	333, 461, 646
ApeKI	GCWGC	2 cut(s)	614, 617
ApoI	RAATTY	1 cut(s)	257
AsiGI	ACCGGT	1 cut(s)	100
Asp700I	GAANNNNTTC	1 cut(s)	478
AspS9I	GGNCC	2 cut(s)	637, 647
AsuHPI	GGTGA	6 cut(s)	174, 253, 253, 445, 701, 803
AvaII	GGWCC	1 cut(s)	637
BanII	GRGCYC	2 cut(s)	165, 404
BarI	GAAGNNNNNNTAC	4 cut(s)	320, 352, 480, 512
BauI	CACGAG	1 cut(s)	804
BbsI	GAAGAC	1 cut(s)	451
Bbv12I	GWGCWC	2 cut(s)	165, 404
BbvI	GCAGC	2 cut(s)	604, 626
BccI	CCATC	1 cut(s)	5
BciT130I	CCWGG	3 cut(s)	302, 501, 542
BcoDI	GTCTC	1 cut(s)	600
BfaI	CTAG	1 cut(s)	874
BfrI	CTTAAG	1 cut(s)	439
BisI	GCNGC	4 cut(s)	333, 615, 618, 730
BlsI	GCNGC	4 cut(s)	334, 616, 619, 731
Bme1390I	CCNGG	3 cut(s)	302, 501, 542
Bme18I	GGWCC	1 cut(s)	637
BmgT120I	GGNCC	2 cut(s)	637, 647
BmiI	GGNNCC	1 cut(s)	733
BmrFI	CCNGG	3 cut(s)	302, 501, 542
BmrI	ACTGGG	1 cut(s)	777
BmsI	GCATC	3 cut(s)	58, 571, 763
BmuI	ACTGGG	1 cut(s)	777
BoxI	GACNNNNGTC	1 cut(s)	687
BpiI	GAAGAC	1 cut(s)	451
BpmI	CTGGAG	1 cut(s)	839
Bpu10I	CCTNAGC	1 cut(s)	758
BpuEI	CTTGAG	1 cut(s)	478
BsaAI	YACGTR	1 cut(s)	376
BsaI	GGTCTC	1 cut(s)	600
BsaJI	CCNNGG	2 cut(s)	429, 540
BsaWI	WCCGGW	1 cut(s)	100
Bsc4I	CCNNNNNNNGG	1 cut(s)	470
Bse118I	RCCGGY	1 cut(s)	100
Bse1I	ACTGG	3 cut(s)	69, 292, 772
BseBI	CCWGG	3 cut(s)	302, 501, 542
BseDI	CCNNGG	2 cut(s)	429, 540
BseGI	GGATG	3 cut(s)	16, 73, 778
BseLI	CCNNNNNNNGG	1 cut(s)	470
BseMII	CTCAG	1 cut(s)	612
BseNI	ACTGG	3 cut(s)	69, 292, 772
BseXI	GCAGC	2 cut(s)	604, 626
BseYI	CCCAGC	1 cut(s)	610
Bsh1236I	CGCG	2 cut(s)	309, 332
BshFI	GGCC	3 cut(s)	335, 463, 648
BshTI	ACCGGT	1 cut(s)	100
BsiHKAI	GWGCWC	2 cut(s)	165, 404
BsiSI	CCGG	2 cut(s)	101, 254
BslFI	GGGAC	1 cut(s)	181
BslI	CCNNNNNNNGG	1 cut(s)	470
BsmAI	GTCTC	1 cut(s)	600
BsmFI	GGGAC	1 cut(s)	181
BsnI	GGCC	3 cut(s)	335, 463, 648
Bso31I	GGTCTC	1 cut(s)	600
Bsp1286I	GDGCHC	2 cut(s)	165, 404
Bsp1407I	TGTACA	1 cut(s)	172
Bsp143I	GATC	1 cut(s)	304
Bsp19I	CCATGG	1 cut(s)	429
BspACI	CCGC	4 cut(s)	309, 332, 687, 729
BspANI	GGCC	3 cut(s)	335, 463, 648
BspCNI	CTCAG	1 cut(s)	613
BspFNI	CGCG	2 cut(s)	309, 332
BspLI	GGNNCC	1 cut(s)	733
BspPI	GGATC	1 cut(s)	312
BspTI	CTTAAG	1 cut(s)	439
BspTNI	GGTCTC	1 cut(s)	600
BsrFI	RCCGGY	1 cut(s)	100
BsrGI	TGTACA	1 cut(s)	172
BsrI	ACTGG	3 cut(s)	69, 292, 772
BssAI	RCCGGY	1 cut(s)	100
BssECI	CCNNGG	2 cut(s)	429, 540
BssMI	GATC	1 cut(s)	304
BssSI	CACGAG	1 cut(s)	804
BssT1I	CCWWGG	1 cut(s)	429
Bst2BI	CACGAG	1 cut(s)	804
Bst2UI	CCWGG	3 cut(s)	302, 501, 542
Bst4CI	ACNGT	1 cut(s)	94
Bst6I	CTCTTC	1 cut(s)	531
BstAFI	CTTAAG	1 cut(s)	439
BstAUI	TGTACA	1 cut(s)	172
BstBAI	YACGTR	1 cut(s)	376
BstC8I	GCNNGC	1 cut(s)	672
BstDEI	CTNAG	5 cut(s)	38, 621, 703, 758, 780
BstDSI	CCRYGG	1 cut(s)	429
BstF5I	GGATG	3 cut(s)	16, 73, 778
BstFNI	CGCG	2 cut(s)	309, 332
BstKTI	GATC	1 cut(s)	307
BstMAI	GTCTC	1 cut(s)	600
BstMBI	GATC	1 cut(s)	304
BstMWI	GCNNNNNNNGC	3 cut(s)	713, 735, 809
BstNI	CCWGG	3 cut(s)	302, 501, 542
BstPAI	GACNNNNGTC	1 cut(s)	687
BstSCI	CCNGG	3 cut(s)	300, 499, 540
BstUI	CGCG	2 cut(s)	309, 332
BstV1I	GCAGC	2 cut(s)	604, 626
BstV2I	GAAGAC	1 cut(s)	451
BsuRI	GGCC	3 cut(s)	335, 463, 648
BtgI	CCRYGG	1 cut(s)	429
BtsCI	GGATG	3 cut(s)	16, 73, 778
BtsI	GCAGTG	1 cut(s)	348
BtsIMutI	CAGTG	3 cut(s)	90, 299, 348
Cac8I	GCNNGC	1 cut(s)	672
CaiI	CAGNNNCTG	2 cut(s)	617, 620
Cfr10I	RCCGGY	1 cut(s)	100
Cfr13I	GGNCC	2 cut(s)	637, 647
Csp6I	GTAC	4 cut(s)	173, 322, 328, 377
CspAI	ACCGGT	1 cut(s)	100
CviAII	CATG	3 cut(s)	430, 465, 713
CviQI	GTAC	4 cut(s)	173, 322, 328, 377
DdeI	CTNAG	5 cut(s)	38, 621, 703, 758, 780
DpnI	GATC	1 cut(s)	306
DpnII	GATC	1 cut(s)	304
Eam1104I	CTCTTC	1 cut(s)	531
EarI	CTCTTC	1 cut(s)	531
Ecl136II	GAGCTC	2 cut(s)	163, 402
Eco130I	CCWWGG	1 cut(s)	429
Eco24I	GRGCYC	2 cut(s)	165, 404
Eco31I	GGTCTC	1 cut(s)	600
Eco47I	GGWCC	1 cut(s)	637
Eco53kI	GAGCTC	2 cut(s)	163, 402
Eco57I	CTGAAG	1 cut(s)	713
EcoICRI	GAGCTC	2 cut(s)	163, 402
EcoRI	GAATTC	1 cut(s)	257
EcoRII	CCWGG	3 cut(s)	300, 499, 540
EcoT14I	CCWWGG	1 cut(s)	429
EcoT38I	GRGCYC	2 cut(s)	165, 404
ErhI	CCWWGG	1 cut(s)	429
FaeI	CATG	3 cut(s)	433, 468, 716
FalI	AAGNNNNNCTT	2 cut(s)	686, 718
FaqI	GGGAC	1 cut(s)	181
FatI	CATG	3 cut(s)	429, 464, 712
FauI	CCCGC	1 cut(s)	302
FblI	GTMKAC	1 cut(s)	130
Fnu4HI	GCNGC	4 cut(s)	333, 615, 618, 730
FokI	GGATG	3 cut(s)	23, 80, 785
FriOI	GRGCYC	2 cut(s)	165, 404
Fsp4HI	GCNGC	4 cut(s)	333, 615, 618, 730
FspBI	CTAG	1 cut(s)	874
GluI	GCNGC	4 cut(s)	333, 615, 618, 730
GsaI	CCCAGC	1 cut(s)	614
GsuI	CTGGAG	1 cut(s)	839
HaeIII	GGCC	3 cut(s)	335, 463, 648
HapII	CCGG	2 cut(s)	101, 254
Hin1II	CATG	3 cut(s)	433, 468, 716
HindIII	AAGCTT	1 cut(s)	531
HinfI	GANTC	4 cut(s)	210, 217, 422, 596
HpaII	CCGG	2 cut(s)	101, 254
HphI	GGTGA	6 cut(s)	174, 253, 253, 445, 701, 803
Hpy166II	GTNNAC	2 cut(s)	131, 379
Hpy188I	TCNGA	1 cut(s)	693
Hpy188III	TCNNGA	4 cut(s)	118, 214, 340, 471
Hpy8I	GTNNAC	2 cut(s)	131, 379
HpyAV	CCTTC	5 cut(s)	48, 223, 346, 355, 582
HpyCH4III	ACNGT	1 cut(s)	94
HpyCH4IV	ACGT	1 cut(s)	375
HpyCH4V	TGCA	4 cut(s)	90, 562, 670, 812
HpyF10VI	GCNNNNNNNGC	3 cut(s)	713, 735, 809
HpyF3I	CTNAG	5 cut(s)	38, 621, 703, 758, 780
HpySE526I	ACGT	1 cut(s)	375
Hsp92II	CATG	3 cut(s)	433, 468, 716
Kzo9I	GATC	1 cut(s)	304
LmnI	GCTCC	4 cut(s)	140, 160, 737, 784
Lsp1109I	GCAGC	2 cut(s)	604, 626
LweI	GCATC	3 cut(s)	58, 571, 763
MaeI	CTAG	1 cut(s)	874
MaeII	ACGT	1 cut(s)	375
MaeIII	GTNAC	3 cut(s)	296, 509, 763
MalI	GATC	1 cut(s)	306
MboI	GATC	1 cut(s)	304
MboII	GAAGA	6 cut(s)	17, 40, 171, 202, 456, 518
MhlI	GDGCHC	2 cut(s)	165, 404
MluCI	AATT	1 cut(s)	257
MlyI	GAGTC	1 cut(s)	211
MmeI	TCCRAC	2 cut(s)	31, 811
MroXI	GAANNNNTTC	1 cut(s)	478
MseI	TTAA	2 cut(s)	204, 440
MslI	CAYNNNNRTG	1 cut(s)	384
MspA1I	CMGCKG	1 cut(s)	617
MspCI	CTTAAG	1 cut(s)	439
MspI	CCGG	2 cut(s)	101, 254
MspR9I	CCNGG	3 cut(s)	302, 501, 542
MvaI	CCWGG	3 cut(s)	302, 501, 542
MvnI	CGCG	2 cut(s)	309, 332
MwoI	GCNNNNNNNGC	3 cut(s)	713, 735, 809
NcoI	CCATGG	1 cut(s)	429
NdeII	GATC	1 cut(s)	304
NlaIII	CATG	3 cut(s)	433, 468, 716
NlaIV	GGNNCC	1 cut(s)	733
NmuCI	GTSAC	1 cut(s)	509
PdmI	GAANNNNTTC	1 cut(s)	478
PfeI	GAWTC	3 cut(s)	210, 422, 596
PflMI	CCANNNNNTGG	1 cut(s)	470
PinAI	ACCGGT	1 cut(s)	100
PkrI	GCNGC	4 cut(s)	334, 616, 619, 731
PleI	GAGTC	1 cut(s)	211
PpsI	GAGTC	1 cut(s)	211
Ppu21I	YACGTR	1 cut(s)	376
PshAI	GACNNNNGTC	1 cut(s)	687
Psp124BI	GAGCTC	2 cut(s)	165, 404
Psp6I	CCWGG	3 cut(s)	300, 499, 540
PspFI	CCCAGC	1 cut(s)	610
PspGI	CCWGG	3 cut(s)	300, 499, 540
PspN4I	GGNNCC	1 cut(s)	733
PspPI	GGNCC	2 cut(s)	637, 647
PstNI	CAGNNNCTG	2 cut(s)	617, 620
PvuII	CAGCTG	1 cut(s)	617
RsaI	GTAC	4 cut(s)	174, 323, 329, 378
RsaNI	GTAC	4 cut(s)	173, 322, 328, 377
RseI	CAYNNNNRTG	1 cut(s)	384
SacI	GAGCTC	2 cut(s)	165, 404
SaqAI	TTAA	2 cut(s)	204, 440
SatI	GCNGC	4 cut(s)	333, 615, 618, 730
Sau3AI	GATC	1 cut(s)	304
Sau96I	GGNCC	2 cut(s)	637, 647
SchI	GAGTC	1 cut(s)	211
ScrFI	CCNGG	3 cut(s)	302, 501, 542
SduI	GDGCHC	2 cut(s)	165, 404
SfaNI	GCATC	3 cut(s)	58, 571, 763
SinI	GGWCC	1 cut(s)	637
SmiMI	CAYNNNNRTG	1 cut(s)	384
SmlI	CTYRAG	2 cut(s)	439, 457
SmoI	CTYRAG	2 cut(s)	439, 457
Sse9I	AATT	1 cut(s)	257
SsiI	CCGC	4 cut(s)	309, 332, 687, 729
SspMI	CTAG	1 cut(s)	874
SstI	GAGCTC	2 cut(s)	165, 404
StyD4I	CCNGG	3 cut(s)	300, 499, 540
StyI	CCWWGG	1 cut(s)	429
TaaI	ACNGT	1 cut(s)	94
TaiI	ACGT	1 cut(s)	378
TaqII	GACCGA	1 cut(s)	148
TasI	AATT	1 cut(s)	257
TatI	WGTACW	1 cut(s)	172
TauI	GCSGC	2 cut(s)	335, 732
TfiI	GAWTC	3 cut(s)	210, 422, 596
Tru1I	TTAA	2 cut(s)	204, 440
Tru9I	TTAA	2 cut(s)	204, 440
TscAI	CASTG	3 cut(s)	97, 299, 355
TseFI	GTSAC	1 cut(s)	509
TseI	GCWGC	2 cut(s)	614, 617
Tsp45I	GTSAC	1 cut(s)	509
TspDTI	ATGAA	2 cut(s)	203, 609
TspRI	CASTG	3 cut(s)	97, 299, 355
Van91I	CCANNNNNTGG	1 cut(s)	470
Vha464I	CTTAAG	1 cut(s)	439
VpaK11BI	GGWCC	1 cut(s)	637
XapI	RAATTY	1 cut(s)	257
XmiI	GTMKAC	1 cut(s)	130
XmnI	GAANNNNTTC	1 cut(s)	478
XspI	CTAG	1 cut(s)	874

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.