Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000442.1

Orthogroup ID

OG0002266

Physical Location & Seq

Genomic Coordinates Forward (+)

241333 .. 242408

Gene Structure 1076 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000442.1_g000043.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

atgcaggcgtatgctgactgcggtctgaagcagaacttagctcaccatgcccttgcctcctgcggctcctgcctccatattgctatgtggctaagggttactggggatgcctctaaggagagagatgaagcaatagctcgtgttgcagagctggagaaaagagttggaaactttgtagaaaccactaccaaacaggaggcagtaatcaagtttatgaggcaacaggtcctggaatactctagcatgaagagggagtatgagtccaagcttgatggtttgttaaatgatgttagtcagcagaggcagaaggctgaaatgtgggagagtaagtgcaaggagcaggaggccttgcatcaggttaaggctactcgtctggaggagttttcttgtcacctggaagaggtcttgaagcagcttggggaagccaatgctgacctttctgaggtcactcagggccttcatgtggctagggaaggtattgagaagatcacaggtacctttactcaggctgaggttaaagtgaagcagctccagaagagctgtgaaatgtatagggtgcttcgtgacatggagaaggaaaaacataccaaagaaaggactgctccaagtgctgagctcaaggaggatctccagaggaacgaaaaccataagcagaacaaagatggtaacatgctaaccagggagacgatcaaagaactcaaaaagcaggtgatgaggtggtcccaagaaaagtttcaggaggaaggtgaagaccgggacatggatggagagggctctaatgcatcaagggaacaagtggagggcggggatgctctgtctttctggacgatttggaatcactgcaaaatgtactttgagtatcataggatttatcaaagtaactttctcctttgccaaaactgtcacaatgcttttaatgctttagaagttgctccaccgccacaggtttccaggtcatccagtaggtcttctctccagcaacattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

DUF3444 DnaJ

Protein Analysis

328

Amino Acids

37.9

Weight (kDa)

6.1

Isoelectric Point (pI)

52.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002266)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g18500 FvH4_2g18510 FvH4_2g18510 FvH4_2g18510 FvH4_2g18510 FvH4_2g18510
malus_domestica	MD05G1170700.v1.1
prunus_persica	Prupe.8G198000_v2.0.a1 Prupe.8G198100_v2.0.a1 Prupe.8G198200_v2.0.a1 Prupe.8G198200_v2.0.a1 Prupe.8G198300_v2.0.a1 Prupe.8G198400_v2.0.a1
pyrus_communis	pycom05g15790
rosa_chinensis	RchiOBHm_Chr6g0284021 RchiOBHm_Chr6g0284061
rosa_laevigata	RLG00000012773 RLG00000012776
rosa_multiflora	Rmu_sc0003102.1_g000003 Rmu_sc0015649.1_g000013 Rmu_ssc0000442.1_g000043
rosa_roxburghii	Rroxscaffold_7G00183920 Rroxscaffold_7G00184970
rosa_rugosa	Rorug06G0159400 Rorug06G0159500 Rorug06G0159600 Rorug06G0160100
rosa_samantha	Rh6AG272700 Rh6AG272800 Rh6AG272900 Rh6AG273200 Rh6BG273300 Rh6BG273700 Rh6BG273800 Rh6CG274500 Rh6CG274600 Rh6CG274700 Rh6CG275300 Rh6CG283300 Rh6DG267700 Rh6DG268200
rosa_wichuraiana	Rw6G023480 Rw6G023510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	697
Acc36I	ACCTGC	1 cut(s)	697
Acc65I	GGTACC	1 cut(s)	494
AccB1I	GGYRCC	1 cut(s)	494
AciI	CCGC	4 cut(s)	21, 63, 804, 938
AclWI	GGATC	1 cut(s)	633
AcuI	CTGAAG	1 cut(s)	47
AfaI	GTAC	2 cut(s)	496, 851
AfiI	CCNNNNNNNGG	5 cut(s)	400, 442, 463, 594, 760
AgsI	TTSAA	1 cut(s)	409
AjnI	CCWGG	4 cut(s)	228, 393, 677, 950
AjuI	GAANNNNNNNTTGG	2 cut(s)	717, 749
AluBI	AGCT	8 cut(s)	41, 137, 151, 268, 415, 529, 540, 616
AluI	AGCT	8 cut(s)	41, 137, 151, 268, 415, 529, 540, 616
Alw21I	GWGCWC	1 cut(s)	618
Alw26I	GTCTC	1 cut(s)	677
AlwI	GGATC	1 cut(s)	633
AlwNI	CAGNNNCTG	1 cut(s)	229
AoxI	GGCC	2 cut(s)	345, 454
ApeKI	GCWGC	2 cut(s)	412, 526
Asp700I	GAANNNNTTC	1 cut(s)	732
Asp718I	GGTACC	1 cut(s)	494
AspS9I	GGNCC	3 cut(s)	226, 454, 720
AsuC2I	CCSGG	1 cut(s)	755
AsuHPI	GGTGA	4 cut(s)	35, 383, 721, 758
AvaII	GGWCC	2 cut(s)	226, 720
BanI	GGYRCC	1 cut(s)	494
BanII	GRGCYC	2 cut(s)	618, 776
BauI	CACGAG	1 cut(s)	138
BbsI	GAAGAC	2 cut(s)	756, 960
Bbv12I	GWGCWC	1 cut(s)	618
BbvCI	CCTCAGC	1 cut(s)	510
BbvI	GCAGC	2 cut(s)	424, 538
BccI	CCATC	3 cut(s)	266, 656, 758
BciT130I	CCWGG	4 cut(s)	230, 395, 679, 952
BcnI	CCSGG	1 cut(s)	755
BcoDI	GTCTC	1 cut(s)	677
BfaI	CTAG	2 cut(s)	240, 468
BfuAI	ACCTGC	1 cut(s)	697
BisI	GCNGC	3 cut(s)	64, 413, 527
BlpI	GCTNAGC	1 cut(s)	612
BlsI	GCNGC	3 cut(s)	65, 414, 528
Bme1390I	CCNGG	5 cut(s)	230, 395, 679, 755, 952
Bme18I	GGWCC	2 cut(s)	226, 720
BmgT120I	GGNCC	3 cut(s)	226, 454, 720
BmiI	GGNNCC	3 cut(s)	67, 496, 722
BmrFI	CCNGG	5 cut(s)	230, 395, 679, 755, 952
BmrI	ACTGGG	1 cut(s)	111
BmsI	GCATC	4 cut(s)	97, 361, 791, 799
BmuI	ACTGGG	1 cut(s)	111
BoxI	GACNNNNGTC	1 cut(s)	21
BpiI	GAAGAC	2 cut(s)	756, 960
BpmI	CTGGAG	5 cut(s)	173, 395, 515, 614, 959
Bpu10I	CCTNAGC	2 cut(s)	92, 510
Bpu1102I	GCTNAGC	1 cut(s)	612
BpuEI	CTTGAG	1 cut(s)	602
BpuMI	CCSGG	1 cut(s)	755
BsaJI	CCNNGG	1 cut(s)	678
BsaXI	ACNNNNNCTCC	4 cut(s)	245, 275, 314, 344
Bsc4I	CCNNNNNNNGG	5 cut(s)	400, 442, 463, 594, 760
Bse1I	ACTGG	2 cut(s)	106, 960
BseBI	CCWGG	4 cut(s)	230, 395, 679, 952
BseDI	CCNNGG	1 cut(s)	678
BseGI	GGATG	4 cut(s)	112, 769, 814, 956
BseLI	CCNNNNNNNGG	5 cut(s)	400, 442, 463, 594, 760
BseMII	CTCAG	5 cut(s)	432, 464, 501, 518, 603
BseNI	ACTGG	2 cut(s)	106, 960
BseRI	GAGGAG	1 cut(s)	392
BseXI	GCAGC	2 cut(s)	424, 538
BshFI	GGCC	2 cut(s)	347, 456
BshNI	GGYRCC	1 cut(s)	494
BsiHKAI	GWGCWC	1 cut(s)	618
BsiSI	CCGG	1 cut(s)	754
BslFI	GGGAC	2 cut(s)	706, 770
BslI	CCNNNNNNNGG	5 cut(s)	400, 442, 463, 594, 760
BsmAI	GTCTC	1 cut(s)	677
BsmBI	CGTCTC	1 cut(s)	677
BsmFI	GGGAC	2 cut(s)	706, 770
BsnI	GGCC	2 cut(s)	347, 456
Bsp1286I	GDGCHC	2 cut(s)	618, 776
Bsp143I	GATC	3 cut(s)	486, 625, 687
Bsp1720I	GCTNAGC	1 cut(s)	612
BspACI	CCGC	4 cut(s)	21, 63, 804, 938
BspANI	GGCC	2 cut(s)	347, 456
BspCNI	CTCAG	5 cut(s)	433, 463, 502, 517, 604
BspLI	GGNNCC	3 cut(s)	67, 496, 722
BspMI	ACCTGC	1 cut(s)	697
BspPI	GGATC	1 cut(s)	633
BspQI	GCTCTTC	1 cut(s)	530
BspT107I	GGYRCC	1 cut(s)	494
BsrI	ACTGG	2 cut(s)	106, 960
BssECI	CCNNGG	1 cut(s)	678
BssMI	GATC	3 cut(s)	486, 625, 687
BssSI	CACGAG	1 cut(s)	138
Bst2BI	CACGAG	1 cut(s)	138
Bst2UI	CCWGG	4 cut(s)	230, 395, 679, 952
Bst4CI	ACNGT	1 cut(s)	902
Bst6I	CTCTTC	3 cut(s)	242, 393, 530
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	8 cut(s)	37, 92, 114, 441, 450, 504, 510, 612
BstENI	CCTNNNNNAGG	2 cut(s)	398, 440
BstF5I	GGATG	4 cut(s)	112, 769, 814, 956
BstKTI	GATC	3 cut(s)	489, 628, 690
BstMAI	GTCTC	1 cut(s)	677
BstMBI	GATC	3 cut(s)	486, 625, 687
BstMWI	GCNNNNNNNGC	5 cut(s)	47, 69, 143, 608, 917
BstNI	CCWGG	4 cut(s)	230, 395, 679, 952
BstNSI	RCATGY	1 cut(s)	673
BstPAI	GACNNNNGTC	1 cut(s)	21
BstSCI	CCNGG	5 cut(s)	228, 393, 677, 753, 950
BstV1I	GCAGC	2 cut(s)	424, 538
BstV2I	GAAGAC	2 cut(s)	756, 960
BstX2I	RGATCY	1 cut(s)	625
BstYI	RGATCY	1 cut(s)	625
BsuRI	GGCC	2 cut(s)	347, 456
BtsCI	GGATG	4 cut(s)	112, 769, 814, 956
BtsI	GCAGTG	1 cut(s)	838
BtsIMutI	CAGTG	1 cut(s)	838
BveI	ACCTGC	1 cut(s)	697
Cac8I	GCNNGC	1 cut(s)	6
CaiI	CAGNNNCTG	1 cut(s)	229
Cfr13I	GGNCC	3 cut(s)	226, 454, 720
Csp6I	GTAC	2 cut(s)	495, 850
CviAII	CATG	6 cut(s)	47, 244, 461, 568, 670, 760
CviQI	GTAC	2 cut(s)	495, 850
DdeI	CTNAG	8 cut(s)	37, 92, 114, 441, 450, 504, 510, 612
DpnI	GATC	3 cut(s)	488, 627, 689
DpnII	GATC	3 cut(s)	486, 625, 687
Eam1104I	CTCTTC	3 cut(s)	242, 393, 530
EarI	CTCTTC	3 cut(s)	242, 393, 530
Ecl136II	GAGCTC	1 cut(s)	616
Eco147I	AGGCCT	1 cut(s)	347
Eco24I	GRGCYC	2 cut(s)	618, 776
Eco47I	GGWCC	2 cut(s)	226, 720
Eco53kI	GAGCTC	1 cut(s)	616
Eco57I	CTGAAG	1 cut(s)	47
EcoICRI	GAGCTC	1 cut(s)	616
EcoNI	CCTNNNNNAGG	2 cut(s)	398, 440
EcoO109I	RGGNCCY	2 cut(s)	226, 454
EcoRII	CCWGG	4 cut(s)	228, 393, 677, 950
EcoT22I	ATGCAT	1 cut(s)	784
EcoT38I	GRGCYC	2 cut(s)	618, 776
Esp3I	CGTCTC	1 cut(s)	677
FaeI	CATG	6 cut(s)	50, 247, 464, 571, 673, 763
FalI	AAGNNNNNCTT	2 cut(s)	20, 52
FaqI	GGGAC	2 cut(s)	706, 770
FatI	CATG	6 cut(s)	46, 243, 460, 567, 669, 759
FauI	CCCGC	1 cut(s)	797
Fnu4HI	GCNGC	3 cut(s)	64, 413, 527
FokI	GGATG	4 cut(s)	119, 776, 821, 943
FriOI	GRGCYC	2 cut(s)	618, 776
Fsp4HI	GCNGC	3 cut(s)	64, 413, 527
FspBI	CTAG	2 cut(s)	240, 468
GluI	GCNGC	3 cut(s)	64, 413, 527
GsuI	CTGGAG	5 cut(s)	173, 395, 515, 614, 959
HaeIII	GGCC	2 cut(s)	347, 456
HapII	CCGG	1 cut(s)	754
Hin1II	CATG	6 cut(s)	50, 247, 464, 571, 673, 763
HindIII	AAGCTT	1 cut(s)	266
HinfI	GANTC	2 cut(s)	260, 835
HpaII	CCGG	1 cut(s)	754
HphI	GGTGA	4 cut(s)	35, 383, 721, 758
Hpy188I	TCNGA	2 cut(s)	27, 442
Hpy188III	TCNNGA	7 cut(s)	374, 406, 532, 563, 631, 737, 823
HpyAV	CCTTC	5 cut(s)	301, 467, 467, 568, 737
HpyCH4III	ACNGT	1 cut(s)	902
HpyCH4V	TGCA	6 cut(s)	4, 146, 333, 352, 782, 843
HpyF10VI	GCNNNNNNNGC	5 cut(s)	47, 69, 143, 608, 917
HpyF3I	CTNAG	8 cut(s)	37, 92, 114, 441, 450, 504, 510, 612
Hsp92II	CATG	6 cut(s)	50, 247, 464, 571, 673, 763
KpnI	GGTACC	1 cut(s)	498
Kzo9I	GATC	3 cut(s)	486, 625, 687
LguI	GCTCTTC	1 cut(s)	530
LmnI	GCTCC	5 cut(s)	71, 337, 534, 607, 937
Lsp1109I	GCAGC	2 cut(s)	424, 538
LweI	GCATC	4 cut(s)	97, 361, 791, 799
MaeI	CTAG	2 cut(s)	240, 468
MaeIII	GTNAC	7 cut(s)	97, 389, 445, 563, 665, 878, 902
MalI	GATC	3 cut(s)	488, 627, 689
MboI	GATC	3 cut(s)	486, 625, 687
MboII	GAAGA	6 cut(s)	259, 410, 496, 547, 761, 960
MflI	RGATCY	1 cut(s)	625
MhlI	GDGCHC	2 cut(s)	618, 776
MlyI	GAGTC	1 cut(s)	269
MmeI	TCCRAC	1 cut(s)	145
Mph1103I	ATGCAT	1 cut(s)	784
MroXI	GAANNNNTTC	1 cut(s)	732
MseI	TTAA	5 cut(s)	281, 360, 516, 915, 985
MspI	CCGG	1 cut(s)	754
MspR9I	CCNGG	5 cut(s)	230, 395, 679, 755, 952
MvaI	CCWGG	4 cut(s)	230, 395, 679, 952
MwoI	GCNNNNNNNGC	5 cut(s)	47, 69, 143, 608, 917
NciI	CCSGG	1 cut(s)	755
NdeII	GATC	3 cut(s)	486, 625, 687
NlaIII	CATG	6 cut(s)	50, 247, 464, 571, 673, 763
NlaIV	GGNNCC	3 cut(s)	67, 496, 722
NmuCI	GTSAC	4 cut(s)	389, 445, 563, 902
NsiI	ATGCAT	1 cut(s)	784
NspI	RCATGY	1 cut(s)	673
PaqCI	CACCTGC	1 cut(s)	697
PceI	AGGCCT	1 cut(s)	347
PciSI	GCTCTTC	1 cut(s)	530
PdmI	GAANNNNTTC	1 cut(s)	732
PfeI	GAWTC	1 cut(s)	835
PfoI	TCCNGGA	1 cut(s)	228
PkrI	GCNGC	3 cut(s)	65, 414, 528
PleI	GAGTC	1 cut(s)	268
PpsI	GAGTC	1 cut(s)	268
PpuMI	RGGWCCY	1 cut(s)	226
PshAI	GACNNNNGTC	1 cut(s)	21
Psp124BI	GAGCTC	1 cut(s)	618
Psp5II	RGGWCCY	1 cut(s)	226
Psp6I	CCWGG	4 cut(s)	228, 393, 677, 950
PspGI	CCWGG	4 cut(s)	228, 393, 677, 950
PspN4I	GGNNCC	3 cut(s)	67, 496, 722
PspPI	GGNCC	3 cut(s)	226, 454, 720
PspPPI	RGGWCCY	1 cut(s)	226
PstNI	CAGNNNCTG	1 cut(s)	229
PsuI	RGATCY	1 cut(s)	625
RsaI	GTAC	2 cut(s)	496, 851
RsaNI	GTAC	2 cut(s)	495, 850
SacI	GAGCTC	1 cut(s)	618
SapI	GCTCTTC	1 cut(s)	530
SaqAI	TTAA	5 cut(s)	281, 360, 516, 915, 985
SatI	GCNGC	3 cut(s)	64, 413, 527
Sau3AI	GATC	3 cut(s)	486, 625, 687
Sau96I	GGNCC	3 cut(s)	226, 454, 720
SchI	GAGTC	1 cut(s)	269
ScrFI	CCNGG	5 cut(s)	230, 395, 679, 755, 952
SduI	GDGCHC	2 cut(s)	618, 776
SfaNI	GCATC	4 cut(s)	97, 361, 791, 799
SinI	GGWCC	2 cut(s)	226, 720
SmlI	CTYRAG	1 cut(s)	617
SmoI	CTYRAG	1 cut(s)	617
SseBI	AGGCCT	1 cut(s)	347
SsiI	CCGC	4 cut(s)	21, 63, 804, 938
SspMI	CTAG	2 cut(s)	240, 468
SstI	GAGCTC	1 cut(s)	618
StuI	AGGCCT	1 cut(s)	347
StyD4I	CCNGG	5 cut(s)	228, 393, 677, 753, 950
TaaI	ACNGT	1 cut(s)	902
TatI	WGTACW	1 cut(s)	849
TauI	GCSGC	1 cut(s)	66
TfiI	GAWTC	1 cut(s)	835
Tru1I	TTAA	5 cut(s)	281, 360, 516, 915, 985
Tru9I	TTAA	5 cut(s)	281, 360, 516, 915, 985
TscAI	CASTG	1 cut(s)	845
TseFI	GTSAC	4 cut(s)	389, 445, 563, 902
TseI	GCWGC	2 cut(s)	412, 526
Tsp45I	GTSAC	4 cut(s)	389, 445, 563, 902
TspDTI	ATGAA	3 cut(s)	141, 260, 449
TspRI	CASTG	1 cut(s)	845
VpaK11BI	GGWCC	2 cut(s)	226, 720
XagI	CCTNNNNNAGG	2 cut(s)	398, 440
XceI	RCATGY	1 cut(s)	673
XmnI	GAANNNNTTC	1 cut(s)	732
XspI	CTAG	2 cut(s)	240, 468
Zsp2I	ATGCAT	1 cut(s)	784

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.