Rw6G023480

Ethylene-responsive transcription factor-like protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Forward (+)
46015653 .. 46019793
4141 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G023480.1

Sequence Viewer

Length: 1251 bp
ATGTGCCACATACACAACAATGGCGAACGAGTGAGCTCTCTGGTAATGGATTTGGAATCAACCATGGTGAGCTTAAGAAGACAGAAACGCTTGAGGCCATGCTCTGGAAGTAGTTCGGGTGTAGCTTCACTTCCTGGTTTTTGTGACAATGGAACTTCTCTTCAAGCTTCTACCCAGGAAAAACCTGATAATGTGCATCTCACACCTTCAAACAATGTAAATCAATCAGAGGAGGCTTCCCAAAATGAATCATTGAGAGACCCAGCAGCTGCTGAGAGGGTTTTGCTGGACCTACTTGGCCCTGCTGATACCAAGATTATGCAGGCGTATGCTGACTGCTGTCTGAAGCAGAACTTAGCTCACCATGCCCTTGCCTCCTGCGGCTCCTGCCTCCATATTGCTATGTGGCTAACGGTTACTGGGGATGCCTCTAAGGAGCGAGATGAAGCAATAGCTCGTGTTGCAGAGCTGGAGAAAAGAGTTGGAAACTTTGTAGAAACCACTACCAAACAGGAGGCAGTAATCGAGTTTATGAGGCAACAGGTCCTGGAATACTCTAGCATGAAGAGGGAGTATGAGTCCAAGCTTGATGGTTTGTTAAATGATGTTAGTCAGCAGAGGCAGAAGGCTGAAATGTGGGAGAGTAAGTGCAAGGAGCAGGAGGCCTTGCATCAGGTTAAGGCTACTCGTCTGGAGGAGTTTTCTTGTCACCTGGAAGAGGTCTTGAAGCAGCTTGGGGAAGCCAATGCTGACCTTTCTGAGGTCACTCAGGGCCTTCATGTGGCTAGGGAAGGTATTGAGAAGATCACAGGTACCTTTACTCAGGCTGAGGTTAAAGTGAAGCAGCTCCAGAAGAGCTGTGAAATGTATAGGGTGCTTCGTGACATGGAGAAGGAAAAGCATACCAAAGAAAGGACTGCTCCAAGTGCTGAGCTCAAGGAGGATCTCCAGAGGAACGAAAACCATAAGCAGAACAAAGATGGTAACATGCTAACCAGGGAGATGATCAAAGAACTCAAAAAGCAGGTGATGAGGTGGTCCCAAGAAAAGTTTCAGGAGGAAGGTGAAGACCGGGACATGGATGGAGAGGGCTCTAATGCATCAAGTGATCAAGGGAACAAGTGGAGGGCGGGGATGCTCTGTCTTTCTGGACGATTTGCAATCACTGCAAAATGTACTTTGAGTATCATAGGATTTATCAAAGTAACTTTCTCCTTTGCCAAAACTGTCACAATGCTTTTAATGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

416

Amino Acids

46.84

Weight (kDa)

5.97

Isoelectric Point (pI)

47.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1015
Acc36I ACCTGC 1 cut(s) 1015
Acc65I GGTACC 1 cut(s) 812
AccB1I GGYRCC 1 cut(s) 812
AccB7I CCANNNNNTGG 1 cut(s) 104
AciI CCGC 2 cut(s) 381, 1130
AclWI GGATC 1 cut(s) 951
AcuI CTGAAG 1 cut(s) 365
AfaI GTAC 2 cut(s) 814, 1177
AfiI CCNNNNNNNGG 6 cut(s) 104, 718, 760, 781, 912, 1078
AflII CTTAAG 1 cut(s) 73
AgsI TTSAA 3 cut(s) 164, 210, 727
AjnI CCWGG 5 cut(s) 133, 174, 546, 711, 995
AjuI GAANNNNNNNTTGG 2 cut(s) 1035, 1067
Alw21I GWGCWC 2 cut(s) 38, 936
Alw26I GTCTC 1 cut(s) 252
AlwI GGATC 1 cut(s) 951
AlwNI CAGNNNCTG 3 cut(s) 269, 272, 547
AoxI GGCC 4 cut(s) 95, 298, 663, 772
ApeKI GCWGC 4 cut(s) 266, 269, 730, 844
Asp700I GAANNNNTTC 2 cut(s) 112, 1050
Asp718I GGTACC 1 cut(s) 812
AspS9I GGNCC 5 cut(s) 289, 299, 544, 772, 1038
AsuC2I CCSGG 1 cut(s) 1073
AsuHPI GGTGA 5 cut(s) 79, 353, 701, 1039, 1076
AvaII GGWCC 3 cut(s) 289, 544, 1038
BanI GGYRCC 1 cut(s) 812
BanII GRGCYC 3 cut(s) 38, 936, 1094
BarI GAAGNNNNNNTAC 2 cut(s) 114, 146
BauI CACGAG 1 cut(s) 456
BbsI GAAGAC 2 cut(s) 85, 1074
Bbv12I GWGCWC 2 cut(s) 38, 936
BbvCI CCTCAGC 1 cut(s) 828
BbvI GCAGC 4 cut(s) 256, 278, 742, 856
BccI CCATC 3 cut(s) 584, 974, 1076
BciT130I CCWGG 5 cut(s) 135, 176, 548, 713, 997
BclI TGATCA 2 cut(s) 1005, 1108
BcnI CCSGG 1 cut(s) 1073
BcoDI GTCTC 1 cut(s) 252
BfaI CTAG 2 cut(s) 558, 786
BfrI CTTAAG 1 cut(s) 73
BfuAI ACCTGC 1 cut(s) 1015
BisI GCNGC 5 cut(s) 267, 270, 382, 731, 845
BlpI GCTNAGC 1 cut(s) 930
BlsI GCNGC 5 cut(s) 268, 271, 383, 732, 846
Bme1390I CCNGG 6 cut(s) 135, 176, 548, 713, 997, 1073
Bme18I GGWCC 3 cut(s) 289, 544, 1038
BmgT120I GGNCC 5 cut(s) 289, 299, 544, 772, 1038
BmiI GGNNCC 3 cut(s) 385, 814, 1040
BmrFI CCNGG 6 cut(s) 135, 176, 548, 713, 997, 1073
BmrI ACTGGG 1 cut(s) 429
BmsI GCATC 5 cut(s) 205, 415, 679, 1109, 1125
BmuI ACTGGG 1 cut(s) 429
BoxI GACNNNNGTC 1 cut(s) 339
BpiI GAAGAC 2 cut(s) 85, 1074
BpmI CTGGAG 4 cut(s) 491, 713, 833, 932
Bpu10I CCTNAGC 1 cut(s) 828
Bpu1102I GCTNAGC 1 cut(s) 930
BpuEI CTTGAG 2 cut(s) 112, 920
BpuMI CCSGG 1 cut(s) 1073
BsaI GGTCTC 1 cut(s) 252
BsaJI CCNNGG 3 cut(s) 63, 174, 996
BsaXI ACNNNNNCTCC 4 cut(s) 563, 593, 632, 662
Bsc4I CCNNNNNNNGG 6 cut(s) 104, 718, 760, 781, 912, 1078
Bse1I ACTGG 1 cut(s) 424
BseBI CCWGG 5 cut(s) 135, 176, 548, 713, 997
BseDI CCNNGG 3 cut(s) 63, 174, 996
BseGI GGATG 3 cut(s) 430, 1087, 1140
BseLI CCNNNNNNNGG 6 cut(s) 104, 718, 760, 781, 912, 1078
BseMII CTCAG 6 cut(s) 264, 750, 782, 819, 836, 921
BseNI ACTGG 1 cut(s) 424
BseRI GAGGAG 2 cut(s) 245, 710
BseXI GCAGC 4 cut(s) 256, 278, 742, 856
BseYI CCCAGC 1 cut(s) 262
BshFI GGCC 4 cut(s) 97, 300, 665, 774
BshNI GGYRCC 1 cut(s) 812
BsiHKAI GWGCWC 2 cut(s) 38, 936
BsiSI CCGG 1 cut(s) 1072
BslFI GGGAC 2 cut(s) 1024, 1088
BslI CCNNNNNNNGG 6 cut(s) 104, 718, 760, 781, 912, 1078
BsmAI GTCTC 1 cut(s) 252
BsmFI GGGAC 2 cut(s) 1024, 1088
BsnI GGCC 4 cut(s) 97, 300, 665, 774
Bso31I GGTCTC 1 cut(s) 252
Bsp1286I GDGCHC 3 cut(s) 38, 936, 1094
Bsp143I GATC 4 cut(s) 804, 943, 1005, 1108
Bsp1720I GCTNAGC 1 cut(s) 930
Bsp19I CCATGG 1 cut(s) 63
BspACI CCGC 2 cut(s) 381, 1130
BspANI GGCC 4 cut(s) 97, 300, 665, 774
BspCNI CTCAG 6 cut(s) 265, 751, 781, 820, 835, 922
BspLI GGNNCC 3 cut(s) 385, 814, 1040
BspMI ACCTGC 1 cut(s) 1015
BspPI GGATC 1 cut(s) 951
BspQI GCTCTTC 1 cut(s) 848
BspT107I GGYRCC 1 cut(s) 812
BspTI CTTAAG 1 cut(s) 73
BspTNI GGTCTC 1 cut(s) 252
BsrI ACTGG 1 cut(s) 424
BssECI CCNNGG 3 cut(s) 63, 174, 996
BssMI GATC 4 cut(s) 804, 943, 1005, 1108
BssSI CACGAG 1 cut(s) 456
BssT1I CCWWGG 1 cut(s) 63
Bst2BI CACGAG 1 cut(s) 456
Bst2UI CCWGG 5 cut(s) 135, 176, 548, 713, 997
Bst4CI ACNGT 2 cut(s) 415, 1228
Bst6I CTCTTC 4 cut(s) 165, 560, 711, 848
BstAFI CTTAAG 1 cut(s) 73
BstAPI GCANNNNNTGC 1 cut(s) 1166
BstC8I GCNNGC 1 cut(s) 324
BstDEI CTNAG 8 cut(s) 273, 355, 432, 759, 768, 822, 828, 930
BstDSI CCRYGG 1 cut(s) 63
BstENI CCTNNNNNAGG 2 cut(s) 716, 758
BstF5I GGATG 3 cut(s) 430, 1087, 1140
BstKTI GATC 4 cut(s) 807, 946, 1008, 1111
BstMAI GTCTC 1 cut(s) 252
BstMBI GATC 4 cut(s) 804, 943, 1005, 1108
BstMWI GCNNNNNNNGC 6 cut(s) 365, 387, 461, 926, 1166, 1243
BstNI CCWGG 5 cut(s) 135, 176, 548, 713, 997
BstNSI RCATGY 1 cut(s) 991
BstPAI GACNNNNGTC 1 cut(s) 339
BstSCI CCNGG 6 cut(s) 133, 174, 546, 711, 995, 1071
BstV1I GCAGC 4 cut(s) 256, 278, 742, 856
BstV2I GAAGAC 2 cut(s) 85, 1074
BstX2I RGATCY 1 cut(s) 943
BstYI RGATCY 1 cut(s) 943
BsuRI GGCC 4 cut(s) 97, 300, 665, 774
BtgI CCRYGG 1 cut(s) 63
BtsCI GGATG 3 cut(s) 430, 1087, 1140
BtsI GCAGTG 1 cut(s) 1164
BtsIMutI CAGTG 1 cut(s) 1164
BveI ACCTGC 1 cut(s) 1015
Cac8I GCNNGC 1 cut(s) 324
CaiI CAGNNNCTG 3 cut(s) 269, 272, 547
Cfr13I GGNCC 5 cut(s) 289, 299, 544, 772, 1038
Csp6I GTAC 2 cut(s) 813, 1176
CviAII CATG 8 cut(s) 64, 99, 365, 562, 779, 886, 988, 1078
CviQI GTAC 2 cut(s) 813, 1176
DdeI CTNAG 8 cut(s) 273, 355, 432, 759, 768, 822, 828, 930
DpnI GATC 4 cut(s) 806, 945, 1007, 1110
DpnII GATC 4 cut(s) 804, 943, 1005, 1108
Eam1104I CTCTTC 4 cut(s) 165, 560, 711, 848
EarI CTCTTC 4 cut(s) 165, 560, 711, 848
Ecl136II GAGCTC 2 cut(s) 36, 934
Eco130I CCWWGG 1 cut(s) 63
Eco147I AGGCCT 1 cut(s) 665
Eco24I GRGCYC 3 cut(s) 38, 936, 1094
Eco31I GGTCTC 1 cut(s) 252
Eco47I GGWCC 3 cut(s) 289, 544, 1038
Eco53kI GAGCTC 2 cut(s) 36, 934
Eco57I CTGAAG 1 cut(s) 365
EcoICRI GAGCTC 2 cut(s) 36, 934
EcoNI CCTNNNNNAGG 2 cut(s) 716, 758
EcoO109I RGGNCCY 2 cut(s) 544, 772
EcoRII CCWGG 5 cut(s) 133, 174, 546, 711, 995
EcoT14I CCWWGG 1 cut(s) 63
EcoT22I ATGCAT 1 cut(s) 1102
EcoT38I GRGCYC 3 cut(s) 38, 936, 1094
ErhI CCWWGG 1 cut(s) 63
FaeI CATG 8 cut(s) 67, 102, 368, 565, 782, 889, 991, 1081
FalI AAGNNNNNCTT 2 cut(s) 338, 370
FaqI GGGAC 2 cut(s) 1024, 1088
FatI CATG 8 cut(s) 63, 98, 364, 561, 778, 885, 987, 1077
FauI CCCGC 1 cut(s) 1123
FbaI TGATCA 2 cut(s) 1005, 1108
Fnu4HI GCNGC 5 cut(s) 267, 270, 382, 731, 845
FokI GGATG 3 cut(s) 437, 1094, 1147
FriOI GRGCYC 3 cut(s) 38, 936, 1094
Fsp4HI GCNGC 5 cut(s) 267, 270, 382, 731, 845
FspBI CTAG 2 cut(s) 558, 786
GluI GCNGC 5 cut(s) 267, 270, 382, 731, 845
GsaI CCCAGC 1 cut(s) 266
GsuI CTGGAG 4 cut(s) 491, 713, 833, 932
HaeIII GGCC 4 cut(s) 97, 300, 665, 774
HapII CCGG 1 cut(s) 1072
Hin1II CATG 8 cut(s) 67, 102, 368, 565, 782, 889, 991, 1081
HindIII AAGCTT 2 cut(s) 165, 584
HinfI GANTC 3 cut(s) 56, 248, 578
HpaII CCGG 1 cut(s) 1072
HphI GGTGA 5 cut(s) 79, 353, 701, 1039, 1076
Hpy188I TCNGA 3 cut(s) 229, 345, 760
Hpy188III TCNNGA 8 cut(s) 105, 692, 724, 850, 881, 949, 1055, 1149
HpyAV CCTTC 6 cut(s) 216, 619, 785, 785, 886, 1055
HpyCH4III ACNGT 2 cut(s) 415, 1228
HpyCH4V TGCA 8 cut(s) 196, 322, 464, 651, 670, 1100, 1160, 1169
HpyF10VI GCNNNNNNNGC 6 cut(s) 365, 387, 461, 926, 1166, 1243
HpyF3I CTNAG 8 cut(s) 273, 355, 432, 759, 768, 822, 828, 930
Hsp92II CATG 8 cut(s) 67, 102, 368, 565, 782, 889, 991, 1081
KpnI GGTACC 1 cut(s) 816
Ksp22I TGATCA 2 cut(s) 1005, 1108
Kzo9I GATC 4 cut(s) 804, 943, 1005, 1108
LguI GCTCTTC 1 cut(s) 848
LmnI GCTCC 5 cut(s) 389, 436, 655, 852, 925
Lsp1109I GCAGC 4 cut(s) 256, 278, 742, 856
LweI GCATC 5 cut(s) 205, 415, 679, 1109, 1125
MaeI CTAG 2 cut(s) 558, 786
MaeIII GTNAC 8 cut(s) 143, 415, 707, 763, 881, 983, 1204, 1228
MalI GATC 4 cut(s) 806, 945, 1007, 1110
MboI GATC 4 cut(s) 804, 943, 1005, 1108
MboII GAAGA 7 cut(s) 90, 152, 577, 728, 814, 865, 1079
MflI RGATCY 1 cut(s) 943
MhlI GDGCHC 3 cut(s) 38, 936, 1094
MlyI GAGTC 1 cut(s) 587
MmeI TCCRAC 1 cut(s) 463
Mph1103I ATGCAT 1 cut(s) 1102
MroXI GAANNNNTTC 2 cut(s) 112, 1050
MseI TTAA 5 cut(s) 74, 599, 678, 834, 1241
MslI CAYNNNNRTG 1 cut(s) 18
MspA1I CMGCKG 1 cut(s) 269
MspCI CTTAAG 1 cut(s) 73
MspI CCGG 1 cut(s) 1072
MspR9I CCNGG 6 cut(s) 135, 176, 548, 713, 997, 1073
MvaI CCWGG 5 cut(s) 135, 176, 548, 713, 997
MwoI GCNNNNNNNGC 6 cut(s) 365, 387, 461, 926, 1166, 1243
NciI CCSGG 1 cut(s) 1073
NcoI CCATGG 1 cut(s) 63
NdeII GATC 4 cut(s) 804, 943, 1005, 1108
NlaIII CATG 8 cut(s) 67, 102, 368, 565, 782, 889, 991, 1081
NlaIV GGNNCC 3 cut(s) 385, 814, 1040
NmuCI GTSAC 5 cut(s) 143, 707, 763, 881, 1228
NsiI ATGCAT 1 cut(s) 1102
NspI RCATGY 1 cut(s) 991
PaqCI CACCTGC 1 cut(s) 1015
PceI AGGCCT 1 cut(s) 665
PciSI GCTCTTC 1 cut(s) 848
PdmI GAANNNNTTC 2 cut(s) 112, 1050
PfeI GAWTC 2 cut(s) 56, 248
PflMI CCANNNNNTGG 1 cut(s) 104
PfoI TCCNGGA 1 cut(s) 546
PkrI GCNGC 5 cut(s) 268, 271, 383, 732, 846
PleI GAGTC 1 cut(s) 586
PpsI GAGTC 1 cut(s) 586
PpuMI RGGWCCY 1 cut(s) 544
PshAI GACNNNNGTC 1 cut(s) 339
Psp124BI GAGCTC 2 cut(s) 38, 936
Psp5II RGGWCCY 1 cut(s) 544
Psp6I CCWGG 5 cut(s) 133, 174, 546, 711, 995
PspFI CCCAGC 1 cut(s) 262
PspGI CCWGG 5 cut(s) 133, 174, 546, 711, 995
PspN4I GGNNCC 3 cut(s) 385, 814, 1040
PspPI GGNCC 5 cut(s) 289, 299, 544, 772, 1038
PspPPI RGGWCCY 1 cut(s) 544
PstNI CAGNNNCTG 3 cut(s) 269, 272, 547
PsuI RGATCY 1 cut(s) 943
PvuII CAGCTG 1 cut(s) 269
RsaI GTAC 2 cut(s) 814, 1177
RsaNI GTAC 2 cut(s) 813, 1176
RseI CAYNNNNRTG 1 cut(s) 18
SacI GAGCTC 2 cut(s) 38, 936
SapI GCTCTTC 1 cut(s) 848
SaqAI TTAA 5 cut(s) 74, 599, 678, 834, 1241
SatI GCNGC 5 cut(s) 267, 270, 382, 731, 845
Sau3AI GATC 4 cut(s) 804, 943, 1005, 1108
Sau96I GGNCC 5 cut(s) 289, 299, 544, 772, 1038
SchI GAGTC 1 cut(s) 587
ScrFI CCNGG 6 cut(s) 135, 176, 548, 713, 997, 1073
SduI GDGCHC 3 cut(s) 38, 936, 1094
SfaNI GCATC 5 cut(s) 205, 415, 679, 1109, 1125
SinI GGWCC 3 cut(s) 289, 544, 1038
SmiMI CAYNNNNRTG 1 cut(s) 18
SmlI CTYRAG 3 cut(s) 73, 91, 935
SmoI CTYRAG 3 cut(s) 73, 91, 935
SseBI AGGCCT 1 cut(s) 665
SsiI CCGC 2 cut(s) 381, 1130
SspMI CTAG 2 cut(s) 558, 786
SstI GAGCTC 2 cut(s) 38, 936
StuI AGGCCT 1 cut(s) 665
StyD4I CCNGG 6 cut(s) 133, 174, 546, 711, 995, 1071
StyI CCWWGG 1 cut(s) 63
TaaI ACNGT 2 cut(s) 415, 1228
TaqI TCGA 1 cut(s) 525
TatI WGTACW 1 cut(s) 1175
TauI GCSGC 1 cut(s) 384
TfiI GAWTC 2 cut(s) 56, 248
Tru1I TTAA 5 cut(s) 74, 599, 678, 834, 1241
Tru9I TTAA 5 cut(s) 74, 599, 678, 834, 1241
TscAI CASTG 1 cut(s) 1171
TseFI GTSAC 5 cut(s) 143, 707, 763, 881, 1228
TseI GCWGC 4 cut(s) 266, 269, 730, 844
Tsp45I GTSAC 5 cut(s) 143, 707, 763, 881, 1228
TspDTI ATGAA 4 cut(s) 261, 459, 578, 767
TspRI CASTG 1 cut(s) 1171
Van91I CCANNNNNTGG 1 cut(s) 104
Vha464I CTTAAG 1 cut(s) 73
VpaK11BI GGWCC 3 cut(s) 289, 544, 1038
XagI CCTNNNNNAGG 2 cut(s) 716, 758
XceI RCATGY 1 cut(s) 991
XmnI GAANNNNTTC 2 cut(s) 112, 1050
XspI CTAG 2 cut(s) 558, 786
Zsp2I ATGCAT 1 cut(s) 1102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.