RLG00000012776

BEST Arabidopsis thaliana protein match is DNAJ heat shock N-terminal domain-containing protein (TAIR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0002266
Physical Location & Seq
Reverse (-)
22248549 .. 22250863
2315 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012776

Sequence Viewer

Length: 993 bp
ATGTCATCGAGTGAGTTCACTTCATCGAATATTATGGAATTAACCATGGGAAGTTCAAGTCAGAAACGCTCGAGATCAAGCTTTGTTATTTTCCAAATTGCAGGACGCAGTGTCAATCTTGCTCCACTTCCTGGATCGGTTGACAACAAAACTGCTGTTCAAGTTTCTCCCATTGCAAAACCTGATCGTATGCGCCCCTTGCTTTTCACTGATTTGAATCAACAACAAGTGAAGCAATTTACTGCTACAAAATATTCCCCTGAGAATACCAGCATGTTGAGGGATCCGACTGCTGCTGAGAGGGTTTTGCTTGACCTGCTTGGCCCTGTTGATGCCAGCATCATGCAGGCGTATACTGACAGTGATCTAAGGCAGAACTTAGCCCACCATGCCCTTGCTTCCTCCCTCCACTTAGCCATGTGGCTGAGGAAGACTGGAGATGTTTCGAGGCAGCGCGATGAAGCCATAGCTCGTGTTGCAGAGCTGGAGGAAAGAGTTAGAAGGTTTGAAAAGCTCTTTGTGAAACAGGAGGCTGAAAATGAGATTCTGAGCCTAGAGGTCGACGAGTACTGTAACATGAAGGAGGAATATGAGTCTAAGATCAAGAGTTTAGCAAATGAGGTTAACCAGCAGAAGCAGGTGACCGAGGTCTTGGAGAGCAAGTTCAAGGATATGGAGGCCATGCACCAGGAGAAGGCTACTCGTCTGGAAAAGGCCTTGAAGCAGCTTAACGACGCCAACATGCTGCTTGCTGAGGTGAGTGAAGGTCTTGGTGTGGCCAGGGAACCAGGGGCCAGGGATCCTAGACATTTCTGGACGGTTTGCATTCACTGCAAAGTCCAGTATCAGTATATCAGGATCTATCAGAATCGCAGGCTTCGGTGCCCGAATTGTCGAAATGCTTTTCTTGCTATAGAAACTGTTTCATCTCCGAAGTCCTATCCATGGAGATGGAGTAGCTCTTCTTGGGTGAAGCCTGAGGAAGATGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3444 DnaJ

Protein Analysis

331

Amino Acids

37.72

Weight (kDa)

7.64

Isoelectric Point (pI)

53.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_20 PF23551 271 - 305 1.7e-14 Zinc beta-ribbon domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 628
Acc36I ACCTGC 2 cut(s) 324, 628
AccB1I GGYRCC 1 cut(s) 882
AccB7I CCANNNNNTGG 1 cut(s) 131
AccI GTMKAC 2 cut(s) 353, 561
AccII CGCG 1 cut(s) 456
AclWI GGATC 6 cut(s) 142, 278, 291, 794, 807, 866
AcoI YGGCCR 1 cut(s) 777
AcyI GRCGYC 1 cut(s) 735
AfaI GTAC 1 cut(s) 569
AfiI CCNNNNNNNGG 3 cut(s) 131, 694, 945
AgsI TTSAA 6 cut(s) 57, 161, 217, 509, 667, 721
AhdI GACNNNNNGTC 1 cut(s) 110
AjnI CCWGG 5 cut(s) 130, 687, 779, 787, 794
AloI GAACNNNNNNTCC 2 cut(s) 647, 679
AluBI AGCT 6 cut(s) 81, 470, 484, 514, 727, 960
AluI AGCT 6 cut(s) 81, 470, 484, 514, 727, 960
AlwI GGATC 6 cut(s) 142, 278, 291, 794, 807, 866
Ama87I CYCGRG 1 cut(s) 70
AoxI GGCC 5 cut(s) 322, 678, 714, 777, 792
ApeKI GCWGC 4 cut(s) 293, 451, 724, 745
AspLEI GCGC 2 cut(s) 195, 456
AspS9I GGNCC 2 cut(s) 323, 792
AsuHPI GGTGA 3 cut(s) 652, 769, 982
AvaI CYCGRG 1 cut(s) 70
AxyI CCTNAGG 1 cut(s) 978
BaeGI GKGCMC 1 cut(s) 887
BalI TGGCCA 1 cut(s) 779
BamHI GGATCC 2 cut(s) 283, 799
BanI GGYRCC 1 cut(s) 882
BauI CACGAG 1 cut(s) 471
BbsI GAAGAC 1 cut(s) 437
BbvCI CCTCAGC 2 cut(s) 425, 753
BbvI GCAGC 4 cut(s) 280, 463, 732, 736
BccI CCATC 2 cut(s) 945, 980
BciT130I CCWGG 5 cut(s) 132, 689, 781, 789, 796
BfaI CTAG 2 cut(s) 554, 804
BfmI CTRYAG 1 cut(s) 912
BfuAI ACCTGC 2 cut(s) 324, 628
BisI GCNGC 4 cut(s) 294, 452, 725, 746
BlsI GCNGC 4 cut(s) 295, 453, 726, 747
BmcAI AGTACT 1 cut(s) 569
Bme1390I CCNGG 5 cut(s) 132, 689, 781, 789, 796
BmeRI GACNNNNNGTC 1 cut(s) 110
BmeT110I CYCGRG 1 cut(s) 70
BmgT120I GGNCC 2 cut(s) 323, 792
BmiI GGNNCC 5 cut(s) 285, 786, 793, 801, 884
BmrFI CCNGG 5 cut(s) 132, 689, 781, 789, 796
BmsI GCATC 2 cut(s) 322, 348
BoxI GACNNNNGTC 1 cut(s) 647
BpiI GAAGAC 1 cut(s) 437
BpmI CTGGAG 2 cut(s) 456, 506
Bpu10I CCTNAGC 2 cut(s) 425, 753
BsaBI GATNNNNATC 1 cut(s) 216
BsaHI GRCGYC 1 cut(s) 735
BsaJI CCNNGG 6 cut(s) 45, 645, 780, 788, 795, 944
BsaXI ACNNNNNCTCC 4 cut(s) 647, 677, 940, 970
Bsc4I CCNNNNNNNGG 3 cut(s) 131, 694, 945
Bse1I ACTGG 2 cut(s) 439, 841
Bse21I CCTNAGG 1 cut(s) 978
Bse3DI GCAATG 1 cut(s) 171
Bse8I GATNNNNATC 1 cut(s) 216
BseBI CCWGG 5 cut(s) 132, 689, 781, 789, 796
BseDI CCNNGG 6 cut(s) 45, 645, 780, 788, 795, 944
BseJI GATNNNNATC 1 cut(s) 216
BseLI CCNNNNNNNGG 3 cut(s) 131, 694, 945
BseMI GCAATG 1 cut(s) 171
BseMII CTCAG 6 cut(s) 252, 288, 416, 539, 744, 969
BseNI ACTGG 2 cut(s) 439, 841
BseSI GKGCMC 1 cut(s) 887
BseXI GCAGC 4 cut(s) 280, 463, 732, 736
Bsh1236I CGCG 1 cut(s) 456
BshFI GGCC 5 cut(s) 324, 680, 716, 779, 794
BshNI GGYRCC 1 cut(s) 882
BsiHKCI CYCGRG 1 cut(s) 70
BslI CCNNNNNNNGG 3 cut(s) 131, 694, 945
BsmI GAATGC 1 cut(s) 825
BsnI GGCC 5 cut(s) 324, 680, 716, 779, 794
BsoBI CYCGRG 1 cut(s) 70
Bsp1286I GDGCHC 1 cut(s) 887
Bsp143I GATC 8 cut(s) 74, 134, 184, 283, 364, 600, 799, 858
Bsp19I CCATGG 2 cut(s) 45, 944
BspANI GGCC 5 cut(s) 324, 680, 716, 779, 794
BspCNI CTCAG 6 cut(s) 253, 289, 417, 540, 745, 970
BspFNI CGCG 1 cut(s) 456
BspLI GGNNCC 5 cut(s) 285, 786, 793, 801, 884
BspMI ACCTGC 2 cut(s) 324, 628
BspPI GGATC 6 cut(s) 142, 278, 291, 794, 807, 866
BspQI GCTCTTC 1 cut(s) 967
BspT107I GGYRCC 1 cut(s) 882
BsrDI GCAATG 1 cut(s) 171
BsrI ACTGG 2 cut(s) 439, 841
BssECI CCNNGG 6 cut(s) 45, 645, 780, 788, 795, 944
BssMI GATC 8 cut(s) 74, 134, 184, 283, 364, 600, 799, 858
BssNAI GTATAC 1 cut(s) 354
BssNI GRCGYC 1 cut(s) 735
BssSI CACGAG 1 cut(s) 471
BssT1I CCWWGG 2 cut(s) 45, 944
Bst1107I GTATAC 1 cut(s) 354
Bst2BI CACGAG 1 cut(s) 471
Bst2UI CCWGG 5 cut(s) 132, 689, 781, 789, 796
Bst4CI ACNGT 4 cut(s) 362, 572, 820, 922
Bst6I CTCTTC 1 cut(s) 967
BstACI GRCGYC 1 cut(s) 735
BstAPI GCANNNNNTGC 1 cut(s) 831
BstC8I GCNNGC 4 cut(s) 337, 348, 750, 875
BstDSI CCRYGG 2 cut(s) 45, 944
BstEII GGTNACC 1 cut(s) 640
BstFNI CGCG 1 cut(s) 456
BstHHI GCGC 2 cut(s) 195, 456
BstKTI GATC 8 cut(s) 77, 137, 187, 286, 367, 603, 802, 861
BstMBI GATC 8 cut(s) 74, 134, 184, 283, 364, 600, 799, 858
BstMWI GCNNNNNNNGC 6 cut(s) 199, 316, 389, 476, 831, 908
BstNI CCWGG 5 cut(s) 132, 689, 781, 789, 796
BstNSI RCATGY 2 cut(s) 277, 745
BstPAI GACNNNNGTC 1 cut(s) 647
BstPI GGTNACC 1 cut(s) 640
BstSCI CCNGG 5 cut(s) 130, 687, 779, 787, 794
BstSFI CTRYAG 1 cut(s) 912
BstSLI GKGCMC 1 cut(s) 887
BstUI CGCG 1 cut(s) 456
BstV1I GCAGC 4 cut(s) 280, 463, 732, 736
BstV2I GAAGAC 1 cut(s) 437
BstX2I RGATCY 3 cut(s) 283, 799, 858
BstXI CCANNNNNNTGG 1 cut(s) 951
BstYI RGATCY 3 cut(s) 283, 799, 858
BstZ17I GTATAC 1 cut(s) 354
Bsu36I CCTNAGG 1 cut(s) 978
BsuRI GGCC 5 cut(s) 324, 680, 716, 779, 794
BtgI CCRYGG 2 cut(s) 45, 944
BtgZI GCGATG 1 cut(s) 471
BtsI GCAGTG 2 cut(s) 115, 829
BtsIMutI CAGTG 4 cut(s) 115, 207, 367, 829
BveI ACCTGC 2 cut(s) 324, 628
Cac8I GCNNGC 4 cut(s) 337, 348, 750, 875
CfoI GCGC 2 cut(s) 195, 456
Cfr13I GGNCC 2 cut(s) 323, 792
CseI GACGC 2 cut(s) 114, 743
Csp6I GTAC 1 cut(s) 568
CviAII CATG 9 cut(s) 46, 274, 343, 389, 418, 577, 682, 742, 945
CviQI GTAC 1 cut(s) 568
DpnI GATC 8 cut(s) 76, 136, 186, 285, 366, 602, 801, 860
DpnII GATC 8 cut(s) 74, 134, 184, 283, 364, 600, 799, 858
DriI GACNNNNNGTC 1 cut(s) 110
EaeI YGGCCR 1 cut(s) 777
Eam1104I CTCTTC 1 cut(s) 967
Eam1105I GACNNNNNGTC 1 cut(s) 110
EarI CTCTTC 1 cut(s) 967
Eco130I CCWWGG 2 cut(s) 45, 944
Eco147I AGGCCT 1 cut(s) 716
Eco81I CCTNAGG 1 cut(s) 978
Eco88I CYCGRG 1 cut(s) 70
Eco91I GGTNACC 1 cut(s) 640
EcoO65I GGTNACC 1 cut(s) 640
EcoRII CCWGG 5 cut(s) 130, 687, 779, 787, 794
EcoT14I CCWWGG 2 cut(s) 45, 944
ErhI CCWWGG 2 cut(s) 45, 944
FaeI CATG 9 cut(s) 49, 277, 346, 392, 421, 580, 685, 745, 948
FatI CATG 9 cut(s) 45, 273, 342, 388, 417, 576, 681, 741, 944
FblI GTMKAC 2 cut(s) 353, 561
Fnu4HI GCNGC 4 cut(s) 294, 452, 725, 746
Fsp4HI GCNGC 4 cut(s) 294, 452, 725, 746
FspBI CTAG 2 cut(s) 554, 804
GlaI GCGC 2 cut(s) 194, 455
GluI GCNGC 4 cut(s) 294, 452, 725, 746
GsuI CTGGAG 2 cut(s) 456, 506
HaeIII GGCC 5 cut(s) 324, 680, 716, 779, 794
HgaI GACGC 2 cut(s) 114, 743
HhaI GCGC 2 cut(s) 195, 456
Hin1I GRCGYC 1 cut(s) 735
Hin1II CATG 9 cut(s) 49, 277, 346, 392, 421, 580, 685, 745, 948
Hin6I GCGC 2 cut(s) 193, 454
HinP1I GCGC 2 cut(s) 193, 454
HincII GTYRAC 3 cut(s) 142, 562, 625
HindII GTYRAC 3 cut(s) 142, 562, 625
HindIII AAGCTT 1 cut(s) 79
HinfI GANTC 4 cut(s) 217, 544, 593, 868
HpaI GTTAAC 1 cut(s) 625
HphI GGTGA 3 cut(s) 652, 769, 982
Hpy166II GTNNAC 5 cut(s) 18, 142, 354, 562, 625
Hpy188I TCNGA 5 cut(s) 63, 288, 549, 867, 933
Hpy188III TCNNGA 5 cut(s) 72, 604, 707, 814, 856
Hpy8I GTNNAC 5 cut(s) 18, 142, 354, 562, 625
Hpy99I CGWCG 2 cut(s) 566, 737
HpyAV CCTTC 4 cut(s) 495, 574, 688, 758
HpyCH4III ACNGT 4 cut(s) 362, 572, 820, 922
HpyCH4V TGCA 7 cut(s) 101, 176, 346, 479, 685, 825, 834
HpyF10VI GCNNNNNNNGC 6 cut(s) 199, 316, 389, 476, 831, 908
Hsp92I GRCGYC 1 cut(s) 735
Hsp92II CATG 9 cut(s) 49, 277, 346, 392, 421, 580, 685, 745, 948
HspAI GCGC 2 cut(s) 193, 454
KspAI GTTAAC 1 cut(s) 625
Kzo9I GATC 8 cut(s) 74, 134, 184, 283, 364, 600, 799, 858
LguI GCTCTTC 1 cut(s) 967
LmnI GCTCC 1 cut(s) 127
Lsp1109I GCAGC 4 cut(s) 280, 463, 732, 736
LweI GCATC 2 cut(s) 322, 348
MaeI CTAG 2 cut(s) 554, 804
MaeIII GTNAC 2 cut(s) 572, 640
MalI GATC 8 cut(s) 76, 136, 186, 285, 366, 602, 801, 860
MboI GATC 8 cut(s) 74, 134, 184, 283, 364, 600, 799, 858
MboII GAAGA 2 cut(s) 442, 954
MflI RGATCY 3 cut(s) 283, 799, 858
MhlI GDGCHC 1 cut(s) 887
MlsI TGGCCA 1 cut(s) 779
MluCI AATT 4 cut(s) 38, 96, 236, 889
MluNI TGGCCA 1 cut(s) 779
MlyI GAGTC 1 cut(s) 602
MmeI TCCRAC 1 cut(s) 311
Mox20I TGGCCA 1 cut(s) 779
MscI TGGCCA 1 cut(s) 779
MseI TTAA 3 cut(s) 41, 624, 729
MslI CAYNNNNRTG 1 cut(s) 949
Msp20I TGGCCA 1 cut(s) 779
MspR9I CCNGG 5 cut(s) 132, 689, 781, 789, 796
Mva1269I GAATGC 1 cut(s) 825
MvaI CCWGG 5 cut(s) 132, 689, 781, 789, 796
MvnI CGCG 1 cut(s) 456
MwoI GCNNNNNNNGC 6 cut(s) 199, 316, 389, 476, 831, 908
NcoI CCATGG 2 cut(s) 45, 944
NdeII GATC 8 cut(s) 74, 134, 184, 283, 364, 600, 799, 858
NlaIII CATG 9 cut(s) 49, 277, 346, 392, 421, 580, 685, 745, 948
NlaIV GGNNCC 5 cut(s) 285, 786, 793, 801, 884
NmuCI GTSAC 1 cut(s) 640
NspI RCATGY 2 cut(s) 277, 745
PaeR7I CTCGAG 1 cut(s) 70
PaqCI CACCTGC 1 cut(s) 628
PceI AGGCCT 1 cut(s) 716
PciSI GCTCTTC 1 cut(s) 967
PctI GAATGC 1 cut(s) 825
PfeI GAWTC 3 cut(s) 217, 544, 868
PflMI CCANNNNNTGG 1 cut(s) 131
PfoI TCCNGGA 1 cut(s) 130
PkrI GCNGC 4 cut(s) 295, 453, 726, 747
PleI GAGTC 1 cut(s) 601
PpsI GAGTC 1 cut(s) 601
PshAI GACNNNNGTC 1 cut(s) 647
Psp6I CCWGG 5 cut(s) 130, 687, 779, 787, 794
PspEI GGTNACC 1 cut(s) 640
PspGI CCWGG 5 cut(s) 130, 687, 779, 787, 794
PspN4I GGNNCC 5 cut(s) 285, 786, 793, 801, 884
PspPI GGNCC 2 cut(s) 323, 792
PsuI RGATCY 3 cut(s) 283, 799, 858
RsaI GTAC 1 cut(s) 569
RsaNI GTAC 1 cut(s) 568
RseI CAYNNNNRTG 1 cut(s) 949
SalI GTCGAC 1 cut(s) 560
SapI GCTCTTC 1 cut(s) 967
SaqAI TTAA 3 cut(s) 41, 624, 729
SatI GCNGC 4 cut(s) 294, 452, 725, 746
Sau3AI GATC 8 cut(s) 74, 134, 184, 283, 364, 600, 799, 858
Sau96I GGNCC 2 cut(s) 323, 792
ScaI AGTACT 1 cut(s) 569
SchI GAGTC 1 cut(s) 602
ScrFI CCNGG 5 cut(s) 132, 689, 781, 789, 796
SduI GDGCHC 1 cut(s) 887
SfaNI GCATC 2 cut(s) 322, 348
SfcI CTRYAG 1 cut(s) 912
Sfr274I CTCGAG 1 cut(s) 70
SlaI CTCGAG 1 cut(s) 70
SmiMI CAYNNNNRTG 1 cut(s) 949
SmlI CTYRAG 1 cut(s) 70
SmoI CTYRAG 1 cut(s) 70
Sse9I AATT 4 cut(s) 38, 96, 236, 889
SseBI AGGCCT 1 cut(s) 716
SspI AATATT 2 cut(s) 31, 254
SspMI CTAG 2 cut(s) 554, 804
StuI AGGCCT 1 cut(s) 716
StyD4I CCNGG 5 cut(s) 130, 687, 779, 787, 794
StyI CCWWGG 2 cut(s) 45, 944
TaaI ACNGT 4 cut(s) 362, 572, 820, 922
TaqI TCGA 6 cut(s) 8, 26, 71, 446, 561, 895
TaqII GACCGA 1 cut(s) 659
TasI AATT 4 cut(s) 38, 96, 236, 889
TatI WGTACW 1 cut(s) 567
TfiI GAWTC 3 cut(s) 217, 544, 868
Tru1I TTAA 3 cut(s) 41, 624, 729
Tru9I TTAA 3 cut(s) 41, 624, 729
TscAI CASTG 4 cut(s) 115, 214, 367, 836
TseFI GTSAC 1 cut(s) 640
TseI GCWGC 4 cut(s) 293, 451, 724, 745
Tsp45I GTSAC 1 cut(s) 640
TspDTI ATGAA 4 cut(s) 12, 474, 593, 915
TspRI CASTG 4 cut(s) 115, 214, 367, 836
Van91I CCANNNNNTGG 1 cut(s) 131
XceI RCATGY 2 cut(s) 277, 745
XhoI CTCGAG 1 cut(s) 70
XmiI GTMKAC 2 cut(s) 353, 561
XspI CTAG 2 cut(s) 554, 804
ZrmI AGTACT 1 cut(s) 569
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.