Rh6BG273700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0002266
Physical Location & Seq
Forward (+)
49471053 .. 49472739
1687 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG273700.1

Sequence Viewer

Length: 432 bp
ATGTCACCGAGTGAGTTCACTTCATCGAATTTGATGGAATTAACCATGGGAAGTTCAAGTCAGAAACGCTCGAGATCAAGCTCAGTTATTTTCCAAATTGCAGGACGCAGTGTCAATCTTGCTCGACTTCCTGGATCGGTTGACAACAAAACTGCTGTTCAAGTTTCTACCATTGCAAAACCTGATCGTATGCGCTCCTTGCTTTTCACTGATTTGAATCAACAACCAGTGAAGCAATTTACTGCTACGAAATATTCCCTTGAGAATACCAGCATGTTGAGGGACCCGGCTACTGAGAGGGTTTTGCTTGACCTGCTTGGCCCTGTTGATGCCAGTACCATGCAGGCGTATACTGACAGTGATATAAGGCAGAACTTAGCCCACCATGCCCTTGCCGGAAGTGCTTGTTTCTCAACAGTTCACTGTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

15.63

Weight (kDa)

8.71

Isoelectric Point (pI)

54.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 321
AccI GTMKAC 1 cut(s) 350
AclWI GGATC 1 cut(s) 142
AcsI RAATTY 1 cut(s) 28
AdeI CACNNNGTG 1 cut(s) 11
AfaI GTAC 1 cut(s) 337
AgsI TTSAA 3 cut(s) 57, 161, 217
AhdI GACNNNNNGTC 1 cut(s) 110
AjnI CCWGG 1 cut(s) 130
AluBI AGCT 1 cut(s) 81
AluI AGCT 1 cut(s) 81
AlwI GGATC 1 cut(s) 142
Ama87I CYCGRG 1 cut(s) 70
AoxI GGCC 1 cut(s) 319
ApoI RAATTY 1 cut(s) 28
AspLEI GCGC 1 cut(s) 195
AspS9I GGNCC 2 cut(s) 283, 320
AsuC2I CCSGG 1 cut(s) 287
AvaI CYCGRG 1 cut(s) 70
AvaII GGWCC 1 cut(s) 283
BccI CCATC 1 cut(s) 28
BciT130I CCWGG 1 cut(s) 132
BcnI CCSGG 1 cut(s) 287
BfuAI ACCTGC 1 cut(s) 321
Bme1390I CCNGG 2 cut(s) 132, 287
Bme18I GGWCC 1 cut(s) 283
BmeRI GACNNNNNGTC 1 cut(s) 110
BmeT110I CYCGRG 1 cut(s) 70
BmgT120I GGNCC 2 cut(s) 283, 320
BmiI GGNNCC 2 cut(s) 284, 285
BmrFI CCNGG 2 cut(s) 132, 287
BmsI GCATC 1 cut(s) 319
BpuEI CTTGAG 1 cut(s) 281
BpuMI CCSGG 1 cut(s) 287
BsaBI GATNNNNATC 1 cut(s) 216
BsaJI CCNNGG 1 cut(s) 45
Bse1I ACTGG 2 cut(s) 227, 333
Bse3DI GCAATG 1 cut(s) 171
Bse8I GATNNNNATC 1 cut(s) 216
BseBI CCWGG 1 cut(s) 132
BseDI CCNNGG 1 cut(s) 45
BseJI GATNNNNATC 1 cut(s) 216
BseMI GCAATG 1 cut(s) 171
BseMII CTCAG 2 cut(s) 96, 285
BseNI ACTGG 2 cut(s) 227, 333
BshFI GGCC 1 cut(s) 321
BsiHKCI CYCGRG 1 cut(s) 70
BsiSI CCGG 2 cut(s) 287, 396
BslFI GGGAC 1 cut(s) 296
BsmFI GGGAC 1 cut(s) 296
BsnI GGCC 1 cut(s) 321
BsoBI CYCGRG 1 cut(s) 70
Bsp143I GATC 3 cut(s) 74, 134, 184
Bsp19I CCATGG 1 cut(s) 45
BspANI GGCC 1 cut(s) 321
BspCNI CTCAG 2 cut(s) 95, 286
BspLI GGNNCC 2 cut(s) 284, 285
BspMI ACCTGC 1 cut(s) 321
BspPI GGATC 1 cut(s) 142
BsrDI GCAATG 1 cut(s) 171
BsrI ACTGG 2 cut(s) 227, 333
BssECI CCNNGG 1 cut(s) 45
BssMI GATC 3 cut(s) 74, 134, 184
BssNAI GTATAC 1 cut(s) 351
BssT1I CCWWGG 1 cut(s) 45
Bst1107I GTATAC 1 cut(s) 351
Bst2UI CCWGG 1 cut(s) 132
Bst4CI ACNGT 3 cut(s) 359, 418, 425
BstC8I GCNNGC 1 cut(s) 345
BstDEI CTNAG 3 cut(s) 82, 294, 376
BstDSI CCRYGG 1 cut(s) 45
BstHHI GCGC 1 cut(s) 195
BstKTI GATC 3 cut(s) 77, 137, 187
BstMBI GATC 3 cut(s) 74, 134, 184
BstMWI GCNNNNNNNGC 4 cut(s) 199, 313, 386, 401
BstNI CCWGG 1 cut(s) 132
BstNSI RCATGY 1 cut(s) 277
BstSCI CCNGG 2 cut(s) 130, 285
BstZ17I GTATAC 1 cut(s) 351
BsuRI GGCC 1 cut(s) 321
BtgI CCRYGG 1 cut(s) 45
BtsI GCAGTG 1 cut(s) 115
BtsIMutI CAGTG 5 cut(s) 115, 207, 234, 364, 421
BveI ACCTGC 1 cut(s) 321
Cac8I GCNNGC 1 cut(s) 345
CfoI GCGC 1 cut(s) 195
Cfr13I GGNCC 2 cut(s) 283, 320
CseI GACGC 1 cut(s) 114
Csp6I GTAC 1 cut(s) 336
CviAII CATG 4 cut(s) 46, 274, 340, 386
CviJI RGCY 4 cut(s) 81, 290, 321, 380
CviKI_1 RGCY 4 cut(s) 81, 290, 321, 380
CviQI GTAC 1 cut(s) 336
DdeI CTNAG 3 cut(s) 82, 294, 376
DpnI GATC 3 cut(s) 76, 136, 186
DpnII GATC 3 cut(s) 74, 134, 184
DraIII CACNNNGTG 1 cut(s) 11
DriI GACNNNNNGTC 1 cut(s) 110
Eam1105I GACNNNNNGTC 1 cut(s) 110
Eco130I CCWWGG 1 cut(s) 45
Eco47I GGWCC 1 cut(s) 283
Eco88I CYCGRG 1 cut(s) 70
EcoO109I RGGNCCY 1 cut(s) 283
EcoRII CCWGG 1 cut(s) 130
EcoT14I CCWWGG 1 cut(s) 45
ErhI CCWWGG 1 cut(s) 45
FaeI CATG 4 cut(s) 49, 277, 343, 389
FaiI YATR 7 cut(s) 47, 191, 275, 341, 351, 365, 387
FaqI GGGAC 1 cut(s) 296
FatI CATG 4 cut(s) 45, 273, 339, 385
FblI GTMKAC 1 cut(s) 350
GlaI GCGC 1 cut(s) 194
HaeIII GGCC 1 cut(s) 321
HapII CCGG 2 cut(s) 287, 396
HgaI GACGC 1 cut(s) 114
HhaI GCGC 1 cut(s) 195
Hin1II CATG 4 cut(s) 49, 277, 343, 389
Hin6I GCGC 1 cut(s) 193
HinP1I GCGC 1 cut(s) 193
HincII GTYRAC 1 cut(s) 142
HindII GTYRAC 1 cut(s) 142
HinfI GANTC 1 cut(s) 217
HpaII CCGG 2 cut(s) 287, 396
Hpy166II GTNNAC 4 cut(s) 18, 142, 351, 421
Hpy188I TCNGA 1 cut(s) 63
Hpy188III TCNNGA 1 cut(s) 72
Hpy8I GTNNAC 4 cut(s) 18, 142, 351, 421
HpyCH4III ACNGT 3 cut(s) 359, 418, 425
HpyCH4V TGCA 3 cut(s) 101, 176, 343
HpyF10VI GCNNNNNNNGC 4 cut(s) 199, 313, 386, 401
HpyF3I CTNAG 3 cut(s) 82, 294, 376
Hsp92II CATG 4 cut(s) 49, 277, 343, 389
HspAI GCGC 1 cut(s) 193
KflI GGGWCCC 1 cut(s) 283
Kzo9I GATC 3 cut(s) 74, 134, 184
LmnI GCTCC 1 cut(s) 200
LweI GCATC 1 cut(s) 319
MaeIII GTNAC 1 cut(s) 3
MalI GATC 3 cut(s) 76, 136, 186
MboI GATC 3 cut(s) 74, 134, 184
MluCI AATT 4 cut(s) 28, 38, 96, 236
MnlI CCTC 2 cut(s) 273, 291
MseI TTAA 2 cut(s) 41, 430
MspI CCGG 2 cut(s) 287, 396
MspR9I CCNGG 2 cut(s) 132, 287
MvaI CCWGG 1 cut(s) 132
MwoI GCNNNNNNNGC 4 cut(s) 199, 313, 386, 401
NciI CCSGG 1 cut(s) 287
NcoI CCATGG 1 cut(s) 45
NdeII GATC 3 cut(s) 74, 134, 184
NlaIII CATG 4 cut(s) 49, 277, 343, 389
NlaIV GGNNCC 2 cut(s) 284, 285
NmuCI GTSAC 1 cut(s) 3
NspI RCATGY 1 cut(s) 277
PaeR7I CTCGAG 1 cut(s) 70
PfeI GAWTC 1 cut(s) 217
PfoI TCCNGGA 1 cut(s) 130
PpuMI RGGWCCY 1 cut(s) 283
Psp5II RGGWCCY 1 cut(s) 283
Psp6I CCWGG 1 cut(s) 130
PspGI CCWGG 1 cut(s) 130
PspN4I GGNNCC 2 cut(s) 284, 285
PspPI GGNCC 2 cut(s) 283, 320
PspPPI RGGWCCY 1 cut(s) 283
RsaI GTAC 1 cut(s) 337
RsaNI GTAC 1 cut(s) 336
SaqAI TTAA 2 cut(s) 41, 430
Sau3AI GATC 3 cut(s) 74, 134, 184
Sau96I GGNCC 2 cut(s) 283, 320
ScrFI CCNGG 2 cut(s) 132, 287
SetI ASST 3 cut(s) 83, 184, 315
SfaNI GCATC 1 cut(s) 319
Sfr274I CTCGAG 1 cut(s) 70
SinI GGWCC 1 cut(s) 283
SlaI CTCGAG 1 cut(s) 70
SmlI CTYRAG 2 cut(s) 70, 260
SmoI CTYRAG 2 cut(s) 70, 260
Sse9I AATT 4 cut(s) 28, 38, 96, 236
SspI AATATT 1 cut(s) 254
StyD4I CCNGG 2 cut(s) 130, 285
StyI CCWWGG 1 cut(s) 45
TaaI ACNGT 3 cut(s) 359, 418, 425
TaqI TCGA 3 cut(s) 26, 71, 124
TasI AATT 4 cut(s) 28, 38, 96, 236
TfiI GAWTC 1 cut(s) 217
Tru1I TTAA 2 cut(s) 41, 430
Tru9I TTAA 2 cut(s) 41, 430
TscAI CASTG 5 cut(s) 115, 214, 234, 364, 428
TseFI GTSAC 1 cut(s) 3
Tsp45I GTSAC 1 cut(s) 3
TspDTI ATGAA 1 cut(s) 12
TspRI CASTG 5 cut(s) 115, 214, 234, 364, 428
VpaK11BI GGWCC 1 cut(s) 283
XapI RAATTY 1 cut(s) 28
XceI RCATGY 1 cut(s) 277
XhoI CTCGAG 1 cut(s) 70
XmiI GTMKAC 1 cut(s) 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.