Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015649.1

Orthogroup ID

OG0002266

Physical Location & Seq

Genomic Coordinates Reverse (-)

44374 .. 46723

Gene Structure 2350 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015649.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

atgtcaccgagtgagttcacttcatcgaatttgatggaattaaccatgggaagttcaagtcagaaacgctcgagatcaagctcaggacacagtgtcaatcttgctccacttcctggatcggttgacaacaaaactgctgttcaagtttctaccattgcaaaacctgatcgtatgcgctccttgcttttcactgatttgaatcaacaaccagtgaagcaatttactgctacgaaatattcccttgagaataccagcatattgagggacccggctaatgcgagggttttgcttgacctgcttggccctgttgatgccagtatcatgcaggcgtatactgacagtgatataaggcagaacttagcccaccatgcccttgcttcctccctccacttagtcatgtggctgaggaaaactggagaggtttcgaggcagcgtgatgaagccatagctcgtgttgcagagctggaggaaagagttaggaggtttgaaaagctctttgtgaaacaggaggctgaaaatgagattctgagcctagaggtcgacgagtactgtaacatgaaggaggagtacgagtctaagattaagagtctatcaaatgaggttaaccagcagaagcaggtgactgtggtcttggagagtaagttcaaggatatggaggccatgcaccaggagaaggctactcgtctggaaaaggccttgaagcagcttaacgacgccaacatgctgcttgctgaggtgagtgaaggtcttggtgtggccagggaaccaggggccagggatcctagacatttctggacggtttgcattcactgcaaagtccagtatcagtatatcaggatctatcagaatcgcaggcttcgctgccccaattgtcgaaatgcttttcttgctatagaaactgtttcatctccaaaatcctatccatggagtagcccttcatgggtgaagcctgaagaagatggacagggtgcagtcaaagtggaggctcaggattctccgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

DUF3444 DnaJ

Protein Analysis

333

Amino Acids

37.73

Weight (kDa)

7.06

Isoelectric Point (pI)

50.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002266)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g18500 FvH4_2g18510 FvH4_2g18510 FvH4_2g18510 FvH4_2g18510 FvH4_2g18510
malus_domestica	MD05G1170700.v1.1
prunus_persica	Prupe.8G198000_v2.0.a1 Prupe.8G198100_v2.0.a1 Prupe.8G198200_v2.0.a1 Prupe.8G198200_v2.0.a1 Prupe.8G198300_v2.0.a1 Prupe.8G198400_v2.0.a1
pyrus_communis	pycom05g15790
rosa_chinensis	RchiOBHm_Chr6g0284021 RchiOBHm_Chr6g0284061
rosa_laevigata	RLG00000012773 RLG00000012776
rosa_multiflora	Rmu_sc0003102.1_g000003 Rmu_sc0015649.1_g000013 Rmu_ssc0000442.1_g000043
rosa_roxburghii	Rroxscaffold_7G00183920 Rroxscaffold_7G00184970
rosa_rugosa	Rorug06G0159400 Rorug06G0159500 Rorug06G0159600 Rorug06G0160100
rosa_samantha	Rh6AG272700 Rh6AG272800 Rh6AG272900 Rh6AG273200 Rh6BG273300 Rh6BG273700 Rh6BG273800 Rh6CG274500 Rh6CG274600 Rh6CG274700 Rh6CG275300 Rh6CG283300 Rh6DG267700 Rh6DG268200
rosa_wichuraiana	Rw6G023480 Rw6G023510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	607
Acc36I	ACCTGC	2 cut(s)	303, 607
AccB7I	CCANNNNNTGG	1 cut(s)	113
AccI	GTMKAC	2 cut(s)	332, 540
AclWI	GGATC	4 cut(s)	124, 773, 786, 845
AcoI	YGGCCR	1 cut(s)	756
AcsI	RAATTY	1 cut(s)	28
AcuI	CTGAAG	1 cut(s)	972
AcyI	GRCGYC	1 cut(s)	714
AdeI	CACNNNGTG	1 cut(s)	11
AfaI	GTAC	2 cut(s)	548, 569
AfiI	CCNNNNNNNGG	4 cut(s)	113, 673, 924, 940
AgsI	TTSAA	6 cut(s)	57, 143, 199, 488, 646, 700
AhdI	GACNNNNNGTC	1 cut(s)	92
AjnI	CCWGG	5 cut(s)	112, 666, 758, 766, 773
AloI	GAACNNNNNNTCC	2 cut(s)	626, 658
AluBI	AGCT	5 cut(s)	81, 449, 463, 493, 706
AluI	AGCT	5 cut(s)	81, 449, 463, 493, 706
AlwI	GGATC	4 cut(s)	124, 773, 786, 845
Ama87I	CYCGRG	1 cut(s)	70
AoxI	GGCC	5 cut(s)	301, 657, 693, 756, 771
ApeKI	GCWGC	4 cut(s)	430, 703, 724, 861
ApoI	RAATTY	1 cut(s)	28
AspLEI	GCGC	1 cut(s)	177
AspS9I	GGNCC	3 cut(s)	265, 302, 771
AsuC2I	CCSGG	1 cut(s)	269
AsuHPI	GGTGA	3 cut(s)	631, 748, 955
AvaI	CYCGRG	1 cut(s)	70
AvaII	GGWCC	1 cut(s)	265
BalI	TGGCCA	1 cut(s)	758
BamHI	GGATCC	1 cut(s)	778
BarI	GAAGNNNNNNTAC	2 cut(s)	551, 583
BauI	CACGAG	1 cut(s)	450
BbvCI	CCTCAGC	2 cut(s)	404, 732
BbvI	GCAGC	4 cut(s)	442, 711, 715, 848
BccI	CCATC	2 cut(s)	28, 953
BcgI	CGANNNNNNTGC	2 cut(s)	268, 302
BciT130I	CCWGG	5 cut(s)	114, 668, 760, 768, 775
BcnI	CCSGG	1 cut(s)	269
BfaI	CTAG	2 cut(s)	533, 783
BfmI	CTRYAG	1 cut(s)	891
BfuAI	ACCTGC	2 cut(s)	303, 607
BisI	GCNGC	4 cut(s)	431, 704, 725, 862
BlsI	GCNGC	4 cut(s)	432, 705, 726, 863
BmcAI	AGTACT	1 cut(s)	548
Bme1390I	CCNGG	6 cut(s)	114, 269, 668, 760, 768, 775
Bme18I	GGWCC	1 cut(s)	265
BmeRI	GACNNNNNGTC	1 cut(s)	92
BmeT110I	CYCGRG	1 cut(s)	70
BmgT120I	GGNCC	3 cut(s)	265, 302, 771
BmiI	GGNNCC	5 cut(s)	266, 267, 765, 772, 780
BmrFI	CCNGG	6 cut(s)	114, 269, 668, 760, 768, 775
BmsI	GCATC	1 cut(s)	301
BoxI	GACNNNNGTC	1 cut(s)	626
BpmI	CTGGAG	2 cut(s)	435, 485
Bpu10I	CCTNAGC	4 cut(s)	82, 404, 732, 987
BpuEI	CTTGAG	1 cut(s)	263
BpuMI	CCSGG	1 cut(s)	269
BsaBI	GATNNNNATC	1 cut(s)	198
BsaHI	GRCGYC	1 cut(s)	714
BsaJI	CCNNGG	5 cut(s)	45, 759, 767, 774, 923
BsaXI	ACNNNNNCTCC	4 cut(s)	557, 587, 626, 656
Bsc4I	CCNNNNNNNGG	4 cut(s)	113, 673, 924, 940
Bse1I	ACTGG	4 cut(s)	209, 315, 418, 820
Bse3DI	GCAATG	1 cut(s)	153
Bse8I	GATNNNNATC	1 cut(s)	198
BseBI	CCWGG	5 cut(s)	114, 668, 760, 768, 775
BseDI	CCNNGG	5 cut(s)	45, 759, 767, 774, 923
BseJI	GATNNNNATC	1 cut(s)	198
BseLI	CCNNNNNNNGG	4 cut(s)	113, 673, 924, 940
BseMI	GCAATG	1 cut(s)	153
BseMII	CTCAG	5 cut(s)	96, 395, 518, 723, 1001
BseNI	ACTGG	4 cut(s)	209, 315, 418, 820
BseRI	GAGGAG	1 cut(s)	578
BseXI	GCAGC	4 cut(s)	442, 711, 715, 848
BsgI	GTGCAG	1 cut(s)	990
BshFI	GGCC	5 cut(s)	303, 659, 695, 758, 773
BsiHKCI	CYCGRG	1 cut(s)	70
BsiSI	CCGG	1 cut(s)	269
BslFI	GGGAC	1 cut(s)	278
BslI	CCNNNNNNNGG	4 cut(s)	113, 673, 924, 940
BsmFI	GGGAC	1 cut(s)	278
BsmI	GAATGC	1 cut(s)	804
BsnI	GGCC	5 cut(s)	303, 659, 695, 758, 773
BsoBI	CYCGRG	1 cut(s)	70
Bsp143I	GATC	5 cut(s)	74, 116, 166, 778, 837
Bsp19I	CCATGG	2 cut(s)	45, 923
BspANI	GGCC	5 cut(s)	303, 659, 695, 758, 773
BspCNI	CTCAG	5 cut(s)	95, 396, 519, 724, 1000
BspLI	GGNNCC	5 cut(s)	266, 267, 765, 772, 780
BspMI	ACCTGC	2 cut(s)	303, 607
BspPI	GGATC	4 cut(s)	124, 773, 786, 845
BsrDI	GCAATG	1 cut(s)	153
BsrI	ACTGG	4 cut(s)	209, 315, 418, 820
BssECI	CCNNGG	5 cut(s)	45, 759, 767, 774, 923
BssMI	GATC	5 cut(s)	74, 116, 166, 778, 837
BssNAI	GTATAC	1 cut(s)	333
BssNI	GRCGYC	1 cut(s)	714
BssSI	CACGAG	1 cut(s)	450
BssT1I	CCWWGG	2 cut(s)	45, 923
Bst1107I	GTATAC	1 cut(s)	333
Bst2BI	CACGAG	1 cut(s)	450
Bst2UI	CCWGG	5 cut(s)	114, 668, 760, 768, 775
Bst4CI	ACNGT	6 cut(s)	92, 341, 551, 625, 799, 901
BstACI	GRCGYC	1 cut(s)	714
BstAPI	GCANNNNNTGC	1 cut(s)	810
BstC8I	GCNNGC	3 cut(s)	327, 729, 854
BstDEI	CTNAG	8 cut(s)	82, 358, 391, 404, 527, 576, 732, 987
BstDSI	CCRYGG	2 cut(s)	45, 923
BstHHI	GCGC	1 cut(s)	177
BstKTI	GATC	5 cut(s)	77, 119, 169, 781, 840
BstMBI	GATC	5 cut(s)	74, 116, 166, 778, 837
BstMWI	GCNNNNNNNGC	7 cut(s)	181, 295, 368, 455, 810, 858, 887
BstNI	CCWGG	5 cut(s)	114, 668, 760, 768, 775
BstNSI	RCATGY	1 cut(s)	724
BstPAI	GACNNNNGTC	1 cut(s)	626
BstSCI	CCNGG	6 cut(s)	112, 267, 666, 758, 766, 773
BstSFI	CTRYAG	1 cut(s)	891
BstV1I	GCAGC	4 cut(s)	442, 711, 715, 848
BstX2I	RGATCY	2 cut(s)	778, 837
BstYI	RGATCY	2 cut(s)	778, 837
BstZ17I	GTATAC	1 cut(s)	333
BsuRI	GGCC	5 cut(s)	303, 659, 695, 758, 773
BtgI	CCRYGG	2 cut(s)	45, 923
BtsI	GCAGTG	1 cut(s)	808
BtsIMutI	CAGTG	5 cut(s)	97, 189, 216, 346, 808
BveI	ACCTGC	2 cut(s)	303, 607
Cac8I	GCNNGC	3 cut(s)	327, 729, 854
CfoI	GCGC	1 cut(s)	177
Cfr13I	GGNCC	3 cut(s)	265, 302, 771
CseI	GACGC	1 cut(s)	722
Csp6I	GTAC	2 cut(s)	547, 568
CviAII	CATG	9 cut(s)	46, 322, 368, 397, 556, 661, 721, 924, 939
CviQI	GTAC	2 cut(s)	547, 568
DdeI	CTNAG	8 cut(s)	82, 358, 391, 404, 527, 576, 732, 987
DpnI	GATC	5 cut(s)	76, 118, 168, 780, 839
DpnII	GATC	5 cut(s)	74, 116, 166, 778, 837
DraIII	CACNNNGTG	1 cut(s)	11
DriI	GACNNNNNGTC	1 cut(s)	92
EaeI	YGGCCR	1 cut(s)	756
Eam1105I	GACNNNNNGTC	1 cut(s)	92
Eco130I	CCWWGG	2 cut(s)	45, 923
Eco147I	AGGCCT	1 cut(s)	695
Eco47I	GGWCC	1 cut(s)	265
Eco57I	CTGAAG	1 cut(s)	972
Eco88I	CYCGRG	1 cut(s)	70
EcoO109I	RGGNCCY	1 cut(s)	265
EcoRII	CCWGG	5 cut(s)	112, 666, 758, 766, 773
EcoT14I	CCWWGG	2 cut(s)	45, 923
ErhI	CCWWGG	2 cut(s)	45, 923
FaeI	CATG	9 cut(s)	49, 325, 371, 400, 559, 664, 724, 927, 942
FaqI	GGGAC	1 cut(s)	278
FatI	CATG	9 cut(s)	45, 321, 367, 396, 555, 660, 720, 923, 938
FblI	GTMKAC	2 cut(s)	332, 540
Fnu4HI	GCNGC	4 cut(s)	431, 704, 725, 862
Fsp4HI	GCNGC	4 cut(s)	431, 704, 725, 862
FspBI	CTAG	2 cut(s)	533, 783
GlaI	GCGC	1 cut(s)	176
GluI	GCNGC	4 cut(s)	431, 704, 725, 862
GsuI	CTGGAG	2 cut(s)	435, 485
HaeIII	GGCC	5 cut(s)	303, 659, 695, 758, 773
HapII	CCGG	1 cut(s)	269
HgaI	GACGC	1 cut(s)	722
HhaI	GCGC	1 cut(s)	177
Hin1I	GRCGYC	1 cut(s)	714
Hin1II	CATG	9 cut(s)	49, 325, 371, 400, 559, 664, 724, 927, 942
Hin6I	GCGC	1 cut(s)	175
HinP1I	GCGC	1 cut(s)	175
HincII	GTYRAC	3 cut(s)	124, 541, 604
HindII	GTYRAC	3 cut(s)	124, 541, 604
HinfI	GANTC	6 cut(s)	199, 523, 572, 586, 847, 992
HpaI	GTTAAC	1 cut(s)	604
HpaII	CCGG	1 cut(s)	269
HphI	GGTGA	3 cut(s)	631, 748, 955
Hpy166II	GTNNAC	5 cut(s)	18, 124, 333, 541, 604
Hpy188I	TCNGA	3 cut(s)	63, 528, 846
Hpy188III	TCNNGA	6 cut(s)	72, 84, 686, 793, 835, 989
Hpy8I	GTNNAC	5 cut(s)	18, 124, 333, 541, 604
Hpy99I	CGWCG	2 cut(s)	545, 716
HpyAV	CCTTC	4 cut(s)	553, 667, 737, 945
HpyCH4III	ACNGT	6 cut(s)	92, 341, 551, 625, 799, 901
HpyCH4V	TGCA	7 cut(s)	158, 325, 458, 664, 804, 813, 971
HpyF10VI	GCNNNNNNNGC	7 cut(s)	181, 295, 368, 455, 810, 858, 887
HpyF3I	CTNAG	8 cut(s)	82, 358, 391, 404, 527, 576, 732, 987
Hsp92I	GRCGYC	1 cut(s)	714
Hsp92II	CATG	9 cut(s)	49, 325, 371, 400, 559, 664, 724, 927, 942
HspAI	GCGC	1 cut(s)	175
KflI	GGGWCCC	1 cut(s)	265
KspAI	GTTAAC	1 cut(s)	604
Kzo9I	GATC	5 cut(s)	74, 116, 166, 778, 837
LmnI	GCTCC	2 cut(s)	109, 182
Lsp1109I	GCAGC	4 cut(s)	442, 711, 715, 848
LweI	GCATC	1 cut(s)	301
MaeI	CTAG	2 cut(s)	533, 783
MaeIII	GTNAC	3 cut(s)	3, 551, 619
MalI	GATC	5 cut(s)	76, 118, 168, 780, 839
MboI	GATC	5 cut(s)	74, 116, 166, 778, 837
MboII	GAAGA	2 cut(s)	965, 968
MfeI	CAATTG	1 cut(s)	868
MflI	RGATCY	2 cut(s)	778, 837
MlsI	TGGCCA	1 cut(s)	758
MluCI	AATT	4 cut(s)	28, 38, 218, 868
MluNI	TGGCCA	1 cut(s)	758
MlyI	GAGTC	2 cut(s)	581, 595
Mox20I	TGGCCA	1 cut(s)	758
MscI	TGGCCA	1 cut(s)	758
MseI	TTAA	4 cut(s)	41, 582, 603, 708
Msp20I	TGGCCA	1 cut(s)	758
MspI	CCGG	1 cut(s)	269
MspR9I	CCNGG	6 cut(s)	114, 269, 668, 760, 768, 775
MunI	CAATTG	1 cut(s)	868
Mva1269I	GAATGC	1 cut(s)	804
MvaI	CCWGG	5 cut(s)	114, 668, 760, 768, 775
MwoI	GCNNNNNNNGC	7 cut(s)	181, 295, 368, 455, 810, 858, 887
NciI	CCSGG	1 cut(s)	269
NcoI	CCATGG	2 cut(s)	45, 923
NdeII	GATC	5 cut(s)	74, 116, 166, 778, 837
NlaIII	CATG	9 cut(s)	49, 325, 371, 400, 559, 664, 724, 927, 942
NlaIV	GGNNCC	5 cut(s)	266, 267, 765, 772, 780
NmuCI	GTSAC	2 cut(s)	3, 619
NspI	RCATGY	1 cut(s)	724
PaeR7I	CTCGAG	1 cut(s)	70
PaqCI	CACCTGC	1 cut(s)	607
PceI	AGGCCT	1 cut(s)	695
PctI	GAATGC	1 cut(s)	804
PfeI	GAWTC	4 cut(s)	199, 523, 847, 992
PflMI	CCANNNNNTGG	1 cut(s)	113
PfoI	TCCNGGA	1 cut(s)	112
PkrI	GCNGC	4 cut(s)	432, 705, 726, 863
PleI	GAGTC	2 cut(s)	580, 594
PpsI	GAGTC	2 cut(s)	580, 594
PpuMI	RGGWCCY	1 cut(s)	265
PshAI	GACNNNNGTC	1 cut(s)	626
Psp5II	RGGWCCY	1 cut(s)	265
Psp6I	CCWGG	5 cut(s)	112, 666, 758, 766, 773
PspGI	CCWGG	5 cut(s)	112, 666, 758, 766, 773
PspN4I	GGNNCC	5 cut(s)	266, 267, 765, 772, 780
PspPI	GGNCC	3 cut(s)	265, 302, 771
PspPPI	RGGWCCY	1 cut(s)	265
PsuI	RGATCY	2 cut(s)	778, 837
RsaI	GTAC	2 cut(s)	548, 569
RsaNI	GTAC	2 cut(s)	547, 568
SalI	GTCGAC	1 cut(s)	539
SaqAI	TTAA	4 cut(s)	41, 582, 603, 708
SatI	GCNGC	4 cut(s)	431, 704, 725, 862
Sau3AI	GATC	5 cut(s)	74, 116, 166, 778, 837
Sau96I	GGNCC	3 cut(s)	265, 302, 771
ScaI	AGTACT	1 cut(s)	548
SchI	GAGTC	2 cut(s)	581, 595
ScrFI	CCNGG	6 cut(s)	114, 269, 668, 760, 768, 775
SfaNI	GCATC	1 cut(s)	301
SfcI	CTRYAG	1 cut(s)	891
Sfr274I	CTCGAG	1 cut(s)	70
SinI	GGWCC	1 cut(s)	265
SlaI	CTCGAG	1 cut(s)	70
SmlI	CTYRAG	2 cut(s)	70, 242
SmoI	CTYRAG	2 cut(s)	70, 242
Sse9I	AATT	4 cut(s)	28, 38, 218, 868
SseBI	AGGCCT	1 cut(s)	695
SspI	AATATT	1 cut(s)	236
SspMI	CTAG	2 cut(s)	533, 783
StuI	AGGCCT	1 cut(s)	695
StyD4I	CCNGG	6 cut(s)	112, 267, 666, 758, 766, 773
StyI	CCWWGG	2 cut(s)	45, 923
TaaI	ACNGT	6 cut(s)	92, 341, 551, 625, 799, 901
TaqI	TCGA	5 cut(s)	26, 71, 425, 540, 874
TasI	AATT	4 cut(s)	28, 38, 218, 868
TatI	WGTACW	1 cut(s)	546
TfiI	GAWTC	4 cut(s)	199, 523, 847, 992
Tru1I	TTAA	4 cut(s)	41, 582, 603, 708
Tru9I	TTAA	4 cut(s)	41, 582, 603, 708
TscAI	CASTG	5 cut(s)	97, 196, 216, 346, 815
TseFI	GTSAC	2 cut(s)	3, 619
TseI	GCWGC	4 cut(s)	430, 703, 724, 861
Tsp45I	GTSAC	2 cut(s)	3, 619
TspDTI	ATGAA	5 cut(s)	12, 453, 572, 894, 927
TspGWI	ACGGA	1 cut(s)	987
TspRI	CASTG	5 cut(s)	97, 196, 216, 346, 815
Van91I	CCANNNNNTGG	1 cut(s)	113
VpaK11BI	GGWCC	1 cut(s)	265
XapI	RAATTY	1 cut(s)	28
XceI	RCATGY	1 cut(s)	724
XhoI	CTCGAG	1 cut(s)	70
XmiI	GTMKAC	2 cut(s)	332, 540
XspI	CTAG	2 cut(s)	533, 783
ZrmI	AGTACT	1 cut(s)	548

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.