Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001757

Physical Location & Seq

Genomic Coordinates Forward (+)

20072515 .. 20074248

Gene Structure 1734 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g24690.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGCAAACATGAGGCACATGCAATGGTCTGATCTTCCTCCTGAACTTATCACAGACATAGCAGAACGTCTAGGCCTACTGGAGGTTATGAGATTCCGCAGCGTCTGCCAGTCTTGGAACTCTGCCACCTCTTCTACAATGTCAGCCAAAATTGAATCTGTACTAAAATATGAAATTTGGTTTCTACATTATGGTTATGATTCTGCTGGCCAATGCCAGTTGGTAACGGCTGAAAATGGTAACATTACCATGAATCTTCCGGAGCTGGATGAAAGTACAACTTGCATCGGTTCGTACCAAGGATGGCTTCTTATGTTCAAACAAGGAGGGTCAATGTTCTTCTTCCGCCCCTTCTCGAAAACAAAGATAGACCTTCCCAAGTTCCCAAACTCTGAACTCACTAACCATGTTGCAGCATTTTCATCTCCTCCCACTTCTGCTGATTGCACAGTTTGTGTCCTCAGCCGTAGCACTAGCAATGATGATGAGTTGGAGCTTTATCTACTTCGTCGAGGCTGCAATGAATGGAACCAGCAGCACAAGCTTAACATTCCACGATCCTCCATTGATACAATTAAATGTGCTGCTTATAGCAAAGCAAGAGAATTCTACTTTTTGGACCATGGTGATAACCTCCTCACGTTATCAGTTACACCCAACCAAGAAATTCGCTGGAGGACTTCTAAACTAGTCGATACCATTGACAATTCACCAGGAACTTTTCATCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

244

Amino Acids

27.66

Weight (kDa)

5.69

Isoelectric Point (pI)

49.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	9 - 45	7.6e-08	F-box domain
Beta-prop_KIB1-4	PF03478	83 - 222	9.2e-17	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001757)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24380 FvH4_2g24390 FvH4_2g24391 FvH4_2g24410 FvH4_2g24671 FvH4_2g24690 FvH4_2g24690 FvH4_2g24690 FvH4_2g24700
malus_domestica	MD11G1297700.v1.1
prunus_persica	Prupe.4G274600_v2.0.a1 Prupe.8G252000_v2.0.a1
pyrus_communis	pycom06g03770
rosa_chinensis	RchiOBHm_Chr6g0292521 RchiOBHm_Chr6g0292531
rosa_laevigata	RLG00000012013 RLG00000012014 RLG00000012015 RLG00000012016 RLG00000012017 RLG00000012049
rosa_multiflora	Rmu_sc0001354.1_g000031 Rmu_sc0001354.1_g000032 Rmu_sc0003908.1_g000003
rosa_roxburghii	Rroxscaffold_7G00174980 Rroxscaffold_7G00175290
rosa_rugosa	Rorug06G0224900 Rorug06G0227400 Rorug06G0227500
rosa_samantha	Rh4AG099200 Rh4CG108900 Rh4CG412100 Rh4DG094200 Rh6AG338000 Rh6AG340600 Rh6AG340700 Rh6BG345300 Rh6BG348000 Rh6BG348100 Rh6BG348200 Rh6CG352300 Rh6CG354900 Rh6CG355000 Rh6DG338300 Rh6DG340700 Rh6DG340800
rosa_wichuraiana	Rw6G029670 Rw6G029680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	259
AciI	CCGC	2 cut(s)	97, 346
AclWI	GGATC	1 cut(s)	552
AcoI	YGGCCR	1 cut(s)	208
AcsI	RAATTY	3 cut(s)	174, 605, 666
AfaI	GTAC	3 cut(s)	162, 277, 296
AfiI	CCNNNNNNNGG	1 cut(s)	82
AgsI	TTSAA	2 cut(s)	155, 319
AhlI	ACTAGT	1 cut(s)	688
AjnI	CCWGG	1 cut(s)	712
AjuI	GAANNNNNNNTTGG	2 cut(s)	291, 323
AloI	GAACNNNNNNTCC	1 cut(s)	709
AluBI	AGCT	3 cut(s)	265, 496, 544
AluI	AGCT	3 cut(s)	265, 496, 544
AlwI	GGATC	1 cut(s)	552
AlwNI	CAGNNNCTG	1 cut(s)	105
Aor13HI	TCCGGA	1 cut(s)	259
AoxI	GGCC	2 cut(s)	73, 208
ApeKI	GCWGC	5 cut(s)	99, 413, 516, 535, 584
ApoI	RAATTY	3 cut(s)	174, 605, 666
AspS9I	GGNCC	1 cut(s)	619
AsuHPI	GGTGA	2 cut(s)	638, 702
AvaII	GGWCC	1 cut(s)	619
BalI	TGGCCA	1 cut(s)	210
BbvCI	CCTCAGC	1 cut(s)	461
BbvI	GCAGC	5 cut(s)	111, 425, 503, 547, 571
BccI	CCATC	1 cut(s)	297
BceAI	ACGGC	2 cut(s)	243, 450
BciT130I	CCWGG	1 cut(s)	714
BcuI	ACTAGT	1 cut(s)	688
BfaI	CTAG	3 cut(s)	71, 474, 689
BisI	GCNGC	5 cut(s)	100, 414, 517, 536, 585
BlsI	GCNGC	5 cut(s)	101, 415, 518, 537, 586
Bme1390I	CCNGG	1 cut(s)	714
Bme18I	GGWCC	1 cut(s)	619
BmgT120I	GGNCC	1 cut(s)	619
BmiI	GGNNCC	1 cut(s)	530
BmrFI	CCNGG	1 cut(s)	714
BmsI	GCATC	1 cut(s)	294
BpmI	CTGGAG	2 cut(s)	101, 694
Bpu10I	CCTNAGC	1 cut(s)	461
BsaJI	CCNNGG	2 cut(s)	298, 622
BsaWI	WCCGGW	1 cut(s)	259
Bsc4I	CCNNNNNNNGG	1 cut(s)	82
Bse1I	ACTGG	3 cut(s)	84, 109, 217
Bse3DI	GCAATG	3 cut(s)	29, 484, 526
BseAI	TCCGGA	1 cut(s)	259
BseBI	CCWGG	1 cut(s)	714
BseDI	CCNNGG	2 cut(s)	298, 622
BseGI	GGATG	3 cut(s)	274, 308, 724
BseLI	CCNNNNNNNGG	1 cut(s)	82
BseMI	GCAATG	3 cut(s)	29, 484, 526
BseMII	CTCAG	1 cut(s)	475
BseNI	ACTGG	3 cut(s)	84, 109, 217
BseRI	GAGGAG	2 cut(s)	417, 626
BseXI	GCAGC	5 cut(s)	111, 425, 503, 547, 571
BshFI	GGCC	2 cut(s)	75, 210
BsiSI	CCGG	1 cut(s)	260
BslI	CCNNNNNNNGG	1 cut(s)	82
BsnI	GGCC	2 cut(s)	75, 210
Bsp13I	TCCGGA	1 cut(s)	259
Bsp143I	GATC	2 cut(s)	31, 557
Bsp19I	CCATGG	1 cut(s)	622
BspACI	CCGC	2 cut(s)	97, 346
BspANI	GGCC	2 cut(s)	75, 210
BspCNI	CTCAG	1 cut(s)	474
BspEI	TCCGGA	1 cut(s)	259
BspLI	GGNNCC	1 cut(s)	530
BspPI	GGATC	1 cut(s)	552
BsrDI	GCAATG	3 cut(s)	29, 484, 526
BsrI	ACTGG	3 cut(s)	84, 109, 217
BssECI	CCNNGG	2 cut(s)	298, 622
BssMI	GATC	2 cut(s)	31, 557
BssT1I	CCWWGG	2 cut(s)	298, 622
Bst2UI	CCWGG	1 cut(s)	714
Bst4CI	ACNGT	1 cut(s)	451
Bst6I	CTCTTC	1 cut(s)	136
BstAPI	GCANNNNNTGC	1 cut(s)	105
BstC8I	GCNNGC	1 cut(s)	208
BstDEI	CTNAG	1 cut(s)	461
BstDSI	CCRYGG	1 cut(s)	622
BstENI	CCTNNNNNAGG	1 cut(s)	80
BstF5I	GGATG	3 cut(s)	274, 308, 724
BstKTI	GATC	2 cut(s)	34, 560
BstMBI	GATC	2 cut(s)	31, 557
BstMWI	GCNNNNNNNGC	2 cut(s)	105, 541
BstNI	CCWGG	1 cut(s)	714
BstNSI	RCATGY	1 cut(s)	22
BstSCI	CCNGG	1 cut(s)	712
BstV1I	GCAGC	5 cut(s)	111, 425, 503, 547, 571
BsuRI	GGCC	2 cut(s)	75, 210
BtgI	CCRYGG	1 cut(s)	622
BtsCI	GGATG	3 cut(s)	274, 308, 724
Cac8I	GCNNGC	1 cut(s)	208
CaiI	CAGNNNCTG	1 cut(s)	105
Cfr13I	GGNCC	1 cut(s)	619
CseI	GACGC	1 cut(s)	91
Csp6I	GTAC	3 cut(s)	161, 276, 295
CviAII	CATG	5 cut(s)	10, 19, 250, 407, 623
CviQI	GTAC	3 cut(s)	161, 276, 295
DdeI	CTNAG	1 cut(s)	461
DpnI	GATC	2 cut(s)	33, 559
DpnII	GATC	2 cut(s)	31, 557
EaeI	YGGCCR	1 cut(s)	208
Eam1104I	CTCTTC	1 cut(s)	136
EarI	CTCTTC	1 cut(s)	136
EciI	GGCGGA	1 cut(s)	335
Eco130I	CCWWGG	2 cut(s)	298, 622
Eco147I	AGGCCT	1 cut(s)	75
Eco47I	GGWCC	1 cut(s)	619
EcoNI	CCTNNNNNAGG	1 cut(s)	80
EcoRI	GAATTC	1 cut(s)	605
EcoRII	CCWGG	1 cut(s)	712
EcoT14I	CCWWGG	2 cut(s)	298, 622
ErhI	CCWWGG	2 cut(s)	298, 622
FaeI	CATG	5 cut(s)	13, 22, 253, 410, 626
FalI	AAGNNNNNCTT	4 cut(s)	265, 297, 291, 323
FatI	CATG	5 cut(s)	9, 18, 249, 406, 622
Fnu4HI	GCNGC	5 cut(s)	100, 414, 517, 536, 585
FokI	GGATG	3 cut(s)	281, 315, 711
Fsp4HI	GCNGC	5 cut(s)	100, 414, 517, 536, 585
FspBI	CTAG	3 cut(s)	71, 474, 689
GluI	GCNGC	5 cut(s)	100, 414, 517, 536, 585
GsuI	CTGGAG	2 cut(s)	101, 694
HaeIII	GGCC	2 cut(s)	75, 210
HapII	CCGG	1 cut(s)	260
HgaI	GACGC	1 cut(s)	91
Hin1II	CATG	5 cut(s)	13, 22, 253, 410, 626
HindIII	AAGCTT	1 cut(s)	542
HinfI	GANTC	4 cut(s)	93, 155, 200, 253
HpaII	CCGG	1 cut(s)	260
HphI	GGTGA	2 cut(s)	638, 702
Hpy188I	TCNGA	2 cut(s)	31, 394
Hpy188III	TCNNGA	3 cut(s)	41, 260, 355
Hpy99I	CGWCG	1 cut(s)	513
HpyAV	CCTTC	2 cut(s)	361, 383
HpyCH4III	ACNGT	1 cut(s)	451
HpyCH4IV	ACGT	2 cut(s)	67, 641
HpyCH4V	TGCA	5 cut(s)	22, 285, 413, 447, 519
HpyF10VI	GCNNNNNNNGC	2 cut(s)	105, 541
HpyF3I	CTNAG	1 cut(s)	461
HpySE526I	ACGT	2 cut(s)	67, 641
Hsp92II	CATG	5 cut(s)	13, 22, 253, 410, 626
Kpn2I	TCCGGA	1 cut(s)	259
Kzo9I	GATC	2 cut(s)	31, 557
LmnI	GCTCC	2 cut(s)	262, 493
Lsp1109I	GCAGC	5 cut(s)	111, 425, 503, 547, 571
LweI	GCATC	1 cut(s)	294
MaeI	CTAG	3 cut(s)	71, 474, 689
MaeII	ACGT	2 cut(s)	67, 641
MaeIII	GTNAC	3 cut(s)	223, 239, 649
MalI	GATC	2 cut(s)	33, 559
MboI	GATC	2 cut(s)	31, 557
MboII	GAAGA	5 cut(s)	26, 123, 248, 331, 334
MlsI	TGGCCA	1 cut(s)	210
MluCI	AATT	6 cut(s)	150, 174, 573, 605, 666, 706
MluNI	TGGCCA	1 cut(s)	210
MmeI	TCCRAC	1 cut(s)	471
Mox20I	TGGCCA	1 cut(s)	210
MroI	TCCGGA	1 cut(s)	259
MscI	TGGCCA	1 cut(s)	210
MseI	TTAA	2 cut(s)	546, 576
MslI	CAYNNNNRTG	1 cut(s)	248
Msp20I	TGGCCA	1 cut(s)	210
MspI	CCGG	1 cut(s)	260
MspR9I	CCNGG	1 cut(s)	714
MvaI	CCWGG	1 cut(s)	714
MwoI	GCNNNNNNNGC	2 cut(s)	105, 541
NcoI	CCATGG	1 cut(s)	622
NdeII	GATC	2 cut(s)	31, 557
NlaIII	CATG	5 cut(s)	13, 22, 253, 410, 626
NlaIV	GGNNCC	1 cut(s)	530
NspI	RCATGY	1 cut(s)	22
PceI	AGGCCT	1 cut(s)	75
PfeI	GAWTC	4 cut(s)	93, 155, 200, 253
PkrI	GCNGC	5 cut(s)	101, 415, 518, 537, 586
Psp6I	CCWGG	1 cut(s)	712
PspGI	CCWGG	1 cut(s)	712
PspN4I	GGNNCC	1 cut(s)	530
PspPI	GGNCC	1 cut(s)	619
PstNI	CAGNNNCTG	1 cut(s)	105
RsaI	GTAC	3 cut(s)	162, 277, 296
RsaNI	GTAC	3 cut(s)	161, 276, 295
RseI	CAYNNNNRTG	1 cut(s)	248
SaqAI	TTAA	2 cut(s)	546, 576
SatI	GCNGC	5 cut(s)	100, 414, 517, 536, 585
Sau3AI	GATC	2 cut(s)	31, 557
Sau96I	GGNCC	1 cut(s)	619
ScrFI	CCNGG	1 cut(s)	714
SetI	ASST	9 cut(s)	70, 87, 131, 267, 375, 498, 546, 636, 644
SfaNI	GCATC	1 cut(s)	294
SinI	GGWCC	1 cut(s)	619
SmiMI	CAYNNNNRTG	1 cut(s)	248
SpeI	ACTAGT	1 cut(s)	688
Sse9I	AATT	6 cut(s)	150, 174, 573, 605, 666, 706
SseBI	AGGCCT	1 cut(s)	75
SsiI	CCGC	2 cut(s)	97, 346
SspMI	CTAG	3 cut(s)	71, 474, 689
StuI	AGGCCT	1 cut(s)	75
StyD4I	CCNGG	1 cut(s)	712
StyI	CCWWGG	2 cut(s)	298, 622
TaaI	ACNGT	1 cut(s)	451
TaiI	ACGT	2 cut(s)	70, 644
TaqI	TCGA	3 cut(s)	356, 511, 693
TasI	AATT	6 cut(s)	150, 174, 573, 605, 666, 706
TatI	WGTACW	2 cut(s)	160, 275
TfiI	GAWTC	4 cut(s)	93, 155, 200, 253
Tru1I	TTAA	2 cut(s)	546, 576
Tru9I	TTAA	2 cut(s)	546, 576
TseI	GCWGC	5 cut(s)	99, 413, 516, 535, 584
TspDTI	ATGAA	6 cut(s)	186, 266, 285, 411, 537, 713
VpaK11BI	GGWCC	1 cut(s)	619
XagI	CCTNNNNNAGG	1 cut(s)	80
XapI	RAATTY	3 cut(s)	174, 605, 666
XceI	RCATGY	1 cut(s)	22
XspI	CTAG	3 cut(s)	71, 474, 689

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.