Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001757

Physical Location & Seq

Genomic Coordinates Forward (+)

20075128 .. 20077521

Gene Structure 2394 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g24700.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGACCGACCAGAAGAAAAAGTGTAAGGCGCAATGGTCTGATCTTCCTCCTGAACTTCTATCTCCAATTGCAGAGTCCCTAGACCTAATCGATCTTCTGTGTTTTCGCGGAGTGTGCAAATCTTGGAAGTCTGCTTCTTCCACAGCCTCAGCTCAGTCTTCAGCTAAACCATGGTTTCTAGTGTATGGGGAAAACAGTTCTGAGTGCCAGTTGCTGTGTGAGAGTAATAAAAAGTACACCATCAGTCTCCCGGAGCTGGTTGGAGCAACTTGTATTGCCTCATCCCAAGGATGGTTGCTTGTATTCCAAGAAAGCTCAGGCTCAGTGTTTTTCTTTTGCCCCTTCTCTCGCGCGAAAATAGACCTTCCCAACTTCCCAGCCTCACAACTCTCCGACCACATTGCAGCATTTTCATCTCCTCCAACTTCCCAAGATTGCATCCTCTGTGTCATTAGCCGTGCCGACAATGATGAATGGGAGCTCAATTTACTTCGCCATGGAGCCGAGGAATGGACCAAACACAATTATTCTAGTAAGATGTATAAGATAGACGCAATCAAAGGTGCTGCTTACCACAAAGAGGGCAGAGAGTTCTACTTCTATGACCCCAAACCTCATCCAAAGGTACTCGTCTTTTCTACTGACAACTTGAACGCGCAGTGTTATCAGATAGTGCGTAACGGGTTAGGTACTTGGACTTTACCATTTGGTTATTGCAAGGATTATTTCGTGACAGAGAACCTTAAGAACAAGCTCGAGTTGGCAGAGAATGTTTCGATCTCTACTTGTGGGATACAAATGGAGATTGGTGGCAGAATTATTTGCGGTGAGAGCATTACTGCTGCTGATGGTGTTACAGACCAATCCAGTAGCCGTCAACTCAAAGGGGTTTGGATCCACCCCAGGTTCTACCAAGTCTCGTCTAATAATCAGAGTAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

314

Amino Acids

35.03

Weight (kDa)

6.32

Isoelectric Point (pI)

45.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	12 - 47	2.3e-08	F-box domain
F-box-like	PF12937	12 - 47	8e-07	F-box-like
Beta-prop_KIB1-4	PF03478	74 - 244	9.4e-20	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001757)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24380 FvH4_2g24390 FvH4_2g24391 FvH4_2g24410 FvH4_2g24671 FvH4_2g24690 FvH4_2g24690 FvH4_2g24690 FvH4_2g24700
malus_domestica	MD11G1297700.v1.1
prunus_persica	Prupe.4G274600_v2.0.a1 Prupe.8G252000_v2.0.a1
pyrus_communis	pycom06g03770
rosa_chinensis	RchiOBHm_Chr6g0292521 RchiOBHm_Chr6g0292531
rosa_laevigata	RLG00000012013 RLG00000012014 RLG00000012015 RLG00000012016 RLG00000012017 RLG00000012049
rosa_multiflora	Rmu_sc0001354.1_g000031 Rmu_sc0001354.1_g000032 Rmu_sc0003908.1_g000003
rosa_roxburghii	Rroxscaffold_7G00174980 Rroxscaffold_7G00175290
rosa_rugosa	Rorug06G0224900 Rorug06G0227400 Rorug06G0227500
rosa_samantha	Rh4AG099200 Rh4CG108900 Rh4CG412100 Rh4DG094200 Rh6AG338000 Rh6AG340600 Rh6AG340700 Rh6BG345300 Rh6BG348000 Rh6BG348100 Rh6BG348200 Rh6CG352300 Rh6CG354900 Rh6CG355000 Rh6DG338300 Rh6DG340700 Rh6DG340800
rosa_wichuraiana	Rw6G029670 Rw6G029680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	4 cut(s)	108, 351, 353, 656
AciI	CCGC	2 cut(s)	108, 825
AclWI	GGATC	2 cut(s)	889, 902
AcuI	CTGAAG	1 cut(s)	144
AfaI	GTAC	3 cut(s)	236, 627, 691
AfiI	CCNNNNNNNGG	4 cut(s)	256, 291, 510, 580
AflII	CTTAAG	1 cut(s)	743
AgsI	TTSAA	1 cut(s)	652
AjnI	CCWGG	1 cut(s)	902
AluBI	AGCT	6 cut(s)	152, 164, 256, 315, 481, 754
AluI	AGCT	6 cut(s)	152, 164, 256, 315, 481, 754
Alw21I	GWGCWC	1 cut(s)	483
Alw26I	GTCTC	2 cut(s)	251, 922
AlwI	GGATC	2 cut(s)	889, 902
AlwNI	CAGNNNCTG	1 cut(s)	214
Ama87I	CYCGRG	1 cut(s)	755
ApeKI	GCWGC	3 cut(s)	404, 566, 842
AspLEI	GCGC	3 cut(s)	31, 353, 658
AspS9I	GGNCC	1 cut(s)	513
AsuC2I	CCSGG	1 cut(s)	251
AsuHPI	GGTGA	1 cut(s)	839
AvaI	CYCGRG	1 cut(s)	755
AvaII	GGWCC	1 cut(s)	513
BamHI	GGATCC	1 cut(s)	894
BanII	GRGCYC	1 cut(s)	483
BbsI	GAAGAC	1 cut(s)	150
Bbv12I	GWGCWC	1 cut(s)	483
BbvCI	CCTCAGC	1 cut(s)	148
BbvI	GCAGC	3 cut(s)	416, 553, 829
BccI	CCATC	3 cut(s)	248, 285, 842
BceAI	ACGGC	2 cut(s)	441, 858
BcgI	CGANNNNNNTGC	2 cut(s)	383, 417
BciT130I	CCWGG	1 cut(s)	904
BciVI	GTATCC	1 cut(s)	786
BcnI	CCSGG	1 cut(s)	251
BcoDI	GTCTC	2 cut(s)	251, 922
BfaI	CTAG	3 cut(s)	80, 179, 531
BfrI	CTTAAG	1 cut(s)	743
BfuI	GTATCC	1 cut(s)	786
BisI	GCNGC	3 cut(s)	405, 567, 843
BlsI	GCNGC	3 cut(s)	406, 568, 844
Bme1390I	CCNGG	2 cut(s)	251, 904
Bme18I	GGWCC	1 cut(s)	513
BmeT110I	CYCGRG	1 cut(s)	755
BmgT120I	GGNCC	1 cut(s)	513
BmiI	GGNNCC	2 cut(s)	502, 896
BmrFI	CCNGG	2 cut(s)	251, 904
BmsI	GCATC	1 cut(s)	447
BpiI	GAAGAC	1 cut(s)	150
Bpu10I	CCTNAGC	2 cut(s)	148, 316
BpuMI	CCSGG	1 cut(s)	251
Bsa29I	ATCGAT	1 cut(s)	90
BsaJI	CCNNGG	5 cut(s)	170, 286, 496, 504, 902
Bsc4I	CCNNNNNNNGG	4 cut(s)	256, 291, 510, 580
Bse1I	ACTGG	2 cut(s)	208, 867
Bse3DI	GCAATG	2 cut(s)	38, 399
BseBI	CCWGG	1 cut(s)	904
BseCI	ATCGAT	1 cut(s)	90
BseDI	CCNNGG	5 cut(s)	170, 286, 496, 504, 902
BseGI	GGATG	4 cut(s)	281, 296, 438, 616
BseLI	CCNNNNNNNGG	4 cut(s)	256, 291, 510, 580
BseMI	GCAATG	2 cut(s)	38, 399
BseMII	CTCAG	5 cut(s)	162, 167, 192, 330, 336
BseNI	ACTGG	2 cut(s)	208, 867
BseRI	GAGGAG	1 cut(s)	408
BseXI	GCAGC	3 cut(s)	416, 553, 829
BseYI	CCCAGC	1 cut(s)	376
Bsh1236I	CGCG	4 cut(s)	108, 351, 353, 656
BshVI	ATCGAT	1 cut(s)	90
BsiHKAI	GWGCWC	1 cut(s)	483
BsiHKCI	CYCGRG	1 cut(s)	755
BsiSI	CCGG	1 cut(s)	251
BslFI	GGGAC	1 cut(s)	61
BslI	CCNNNNNNNGG	4 cut(s)	256, 291, 510, 580
BsmAI	GTCTC	2 cut(s)	251, 922
BsmFI	GGGAC	1 cut(s)	61
BsoBI	CYCGRG	1 cut(s)	755
Bsp1286I	GDGCHC	1 cut(s)	483
Bsp143I	GATC	4 cut(s)	40, 91, 777, 894
Bsp19I	CCATGG	2 cut(s)	170, 496
BspACI	CCGC	2 cut(s)	108, 825
BspCNI	CTCAG	5 cut(s)	161, 166, 193, 329, 335
BspDI	ATCGAT	1 cut(s)	90
BspFNI	CGCG	4 cut(s)	108, 351, 353, 656
BspLI	GGNNCC	2 cut(s)	502, 896
BspPI	GGATC	2 cut(s)	889, 902
BspTI	CTTAAG	1 cut(s)	743
BsrDI	GCAATG	2 cut(s)	38, 399
BsrI	ACTGG	2 cut(s)	208, 867
BssECI	CCNNGG	5 cut(s)	170, 286, 496, 504, 902
BssMI	GATC	4 cut(s)	40, 91, 777, 894
BssT1I	CCWWGG	3 cut(s)	170, 286, 496
Bst2UI	CCWGG	1 cut(s)	904
Bst4CI	ACNGT	1 cut(s)	197
BstAFI	CTTAAG	1 cut(s)	743
BstDEI	CTNAG	5 cut(s)	148, 153, 201, 316, 322
BstDSI	CCRYGG	2 cut(s)	170, 496
BstF5I	GGATG	4 cut(s)	281, 296, 438, 616
BstFNI	CGCG	4 cut(s)	108, 351, 353, 656
BstHHI	GCGC	3 cut(s)	31, 353, 658
BstKTI	GATC	4 cut(s)	43, 94, 780, 897
BstMAI	GTCTC	2 cut(s)	251, 922
BstMBI	GATC	4 cut(s)	40, 91, 777, 894
BstMWI	GCNNNNNNNGC	2 cut(s)	114, 831
BstNI	CCWGG	1 cut(s)	904
BstSCI	CCNGG	2 cut(s)	249, 902
BstUI	CGCG	4 cut(s)	108, 351, 353, 656
BstV1I	GCAGC	3 cut(s)	416, 553, 829
BstV2I	GAAGAC	1 cut(s)	150
BstX2I	RGATCY	1 cut(s)	894
BstYI	RGATCY	1 cut(s)	894
Bsu15I	ATCGAT	1 cut(s)	90
BsuI	GTATCC	1 cut(s)	786
BsuTUI	ATCGAT	1 cut(s)	90
BtgI	CCRYGG	2 cut(s)	170, 496
BtsCI	GGATG	4 cut(s)	281, 296, 438, 616
BtsI	GCAGTG	1 cut(s)	665
BtsIMutI	CAGTG	2 cut(s)	330, 665
CaiI	CAGNNNCTG	1 cut(s)	214
CfoI	GCGC	3 cut(s)	31, 353, 658
Cfr13I	GGNCC	1 cut(s)	513
ClaI	ATCGAT	1 cut(s)	90
CseI	GACGC	1 cut(s)	560
Csp6I	GTAC	3 cut(s)	235, 626, 690
CviAII	CATG	2 cut(s)	171, 497
CviQI	GTAC	3 cut(s)	235, 626, 690
DdeI	CTNAG	5 cut(s)	148, 153, 201, 316, 322
DpnI	GATC	4 cut(s)	42, 93, 779, 896
DpnII	GATC	4 cut(s)	40, 91, 777, 894
Ecl136II	GAGCTC	1 cut(s)	481
Eco130I	CCWWGG	3 cut(s)	170, 286, 496
Eco24I	GRGCYC	1 cut(s)	483
Eco47I	GGWCC	1 cut(s)	513
Eco53kI	GAGCTC	1 cut(s)	481
Eco57I	CTGAAG	1 cut(s)	144
Eco88I	CYCGRG	1 cut(s)	755
EcoICRI	GAGCTC	1 cut(s)	481
EcoRII	CCWGG	1 cut(s)	902
EcoT14I	CCWWGG	3 cut(s)	170, 286, 496
EcoT38I	GRGCYC	1 cut(s)	483
ErhI	CCWWGG	3 cut(s)	170, 286, 496
FaeI	CATG	2 cut(s)	174, 500
FaiI	YATR	5 cut(s)	172, 186, 498, 543, 603
FaqI	GGGAC	1 cut(s)	61
FatI	CATG	2 cut(s)	170, 496
Fnu4HI	GCNGC	3 cut(s)	405, 567, 843
FokI	GGATG	4 cut(s)	268, 303, 425, 603
FriOI	GRGCYC	1 cut(s)	483
Fsp4HI	GCNGC	3 cut(s)	405, 567, 843
FspBI	CTAG	3 cut(s)	80, 179, 531
GlaI	GCGC	3 cut(s)	30, 352, 657
GluI	GCNGC	3 cut(s)	405, 567, 843
GsaI	CCCAGC	1 cut(s)	380
HapII	CCGG	1 cut(s)	251
HgaI	GACGC	1 cut(s)	560
HhaI	GCGC	3 cut(s)	31, 353, 658
Hin1II	CATG	2 cut(s)	174, 500
Hin6I	GCGC	3 cut(s)	29, 351, 656
HinP1I	GCGC	3 cut(s)	29, 351, 656
HincII	GTYRAC	1 cut(s)	878
HindII	GTYRAC	1 cut(s)	878
HinfI	GANTC	1 cut(s)	74
HpaII	CCGG	1 cut(s)	251
HphI	GGTGA	1 cut(s)	839
Hpy166II	GTNNAC	2 cut(s)	237, 878
Hpy188I	TCNGA	5 cut(s)	40, 202, 394, 669, 933
Hpy188III	TCNNGA	2 cut(s)	50, 730
Hpy8I	GTNNAC	2 cut(s)	237, 878
HpyAV	CCTTC	2 cut(s)	352, 374
HpyCH4III	ACNGT	1 cut(s)	197
HpyCH4V	TGCA	5 cut(s)	71, 117, 404, 438, 717
HpyF10VI	GCNNNNNNNGC	2 cut(s)	114, 831
HpyF3I	CTNAG	5 cut(s)	148, 153, 201, 316, 322
Hsp92II	CATG	2 cut(s)	174, 500
HspAI	GCGC	3 cut(s)	29, 351, 656
Kzo9I	GATC	4 cut(s)	40, 91, 777, 894
LmnI	GCTCC	4 cut(s)	253, 263, 478, 500
Lsp1109I	GCAGC	3 cut(s)	416, 553, 829
LweI	GCATC	1 cut(s)	447
MaeI	CTAG	3 cut(s)	80, 179, 531
MaeIII	GTNAC	3 cut(s)	677, 730, 853
MalI	GATC	4 cut(s)	42, 93, 779, 896
MboI	GATC	4 cut(s)	40, 91, 777, 894
MboII	GAAGA	5 cut(s)	25, 35, 86, 129, 150
MfeI	CAATTG	1 cut(s)	66
MflI	RGATCY	1 cut(s)	894
MhlI	GDGCHC	1 cut(s)	483
MluCI	AATT	4 cut(s)	66, 484, 523, 816
MlyI	GAGTC	1 cut(s)	83
MmeI	TCCRAC	3 cut(s)	241, 417, 446
MnlI	CCTC	9 cut(s)	57, 157, 289, 391, 429, 452, 499, 574, 624
MseI	TTAA	1 cut(s)	744
MspCI	CTTAAG	1 cut(s)	743
MspI	CCGG	1 cut(s)	251
MspR9I	CCNGG	2 cut(s)	251, 904
MunI	CAATTG	1 cut(s)	66
MvaI	CCWGG	1 cut(s)	904
MvnI	CGCG	4 cut(s)	108, 351, 353, 656
MwoI	GCNNNNNNNGC	2 cut(s)	114, 831
NciI	CCSGG	1 cut(s)	251
NcoI	CCATGG	2 cut(s)	170, 496
NdeII	GATC	4 cut(s)	40, 91, 777, 894
NlaIII	CATG	2 cut(s)	174, 500
NlaIV	GGNNCC	2 cut(s)	502, 896
NmeAIII	GCCGAG	1 cut(s)	529
NmuCI	GTSAC	1 cut(s)	730
PaeR7I	CTCGAG	1 cut(s)	755
PfoI	TCCNGGA	1 cut(s)	249
PkrI	GCNGC	3 cut(s)	406, 568, 844
PleI	GAGTC	1 cut(s)	82
PpsI	GAGTC	1 cut(s)	82
Psp124BI	GAGCTC	1 cut(s)	483
Psp6I	CCWGG	1 cut(s)	902
PspFI	CCCAGC	1 cut(s)	376
PspGI	CCWGG	1 cut(s)	902
PspN4I	GGNNCC	2 cut(s)	502, 896
PspPI	GGNCC	1 cut(s)	513
PspXI	VCTCGAGB	1 cut(s)	755
PstNI	CAGNNNCTG	1 cut(s)	214
PsuI	RGATCY	1 cut(s)	894
RsaI	GTAC	3 cut(s)	236, 627, 691
RsaNI	GTAC	3 cut(s)	235, 626, 690
SacI	GAGCTC	1 cut(s)	483
SaqAI	TTAA	1 cut(s)	744
SatI	GCNGC	3 cut(s)	405, 567, 843
Sau3AI	GATC	4 cut(s)	40, 91, 777, 894
Sau96I	GGNCC	1 cut(s)	513
SchI	GAGTC	1 cut(s)	83
ScrFI	CCNGG	2 cut(s)	251, 904
SduI	GDGCHC	1 cut(s)	483
SfaNI	GCATC	1 cut(s)	447
Sfr274I	CTCGAG	1 cut(s)	755
SinI	GGWCC	1 cut(s)	513
SlaI	CTCGAG	1 cut(s)	755
SmlI	CTYRAG	2 cut(s)	743, 755
SmoI	CTYRAG	2 cut(s)	743, 755
Sse9I	AATT	4 cut(s)	66, 484, 523, 816
SsiI	CCGC	2 cut(s)	108, 825
SspMI	CTAG	3 cut(s)	80, 179, 531
SstI	GAGCTC	1 cut(s)	483
StyD4I	CCNGG	2 cut(s)	249, 902
StyI	CCWWGG	3 cut(s)	170, 286, 496
TaaI	ACNGT	1 cut(s)	197
TaqI	TCGA	3 cut(s)	90, 756, 776
TaqII	GACCGA	1 cut(s)	20
TasI	AATT	4 cut(s)	66, 484, 523, 816
TatI	WGTACW	1 cut(s)	234
Tru1I	TTAA	1 cut(s)	744
Tru9I	TTAA	1 cut(s)	744
TscAI	CASTG	2 cut(s)	330, 665
TseFI	GTSAC	1 cut(s)	730
TseI	GCWGC	3 cut(s)	404, 566, 842
Tsp45I	GTSAC	1 cut(s)	730
TspDTI	ATGAA	2 cut(s)	402, 486
TspRI	CASTG	2 cut(s)	330, 665
Vha464I	CTTAAG	1 cut(s)	743
VpaK11BI	GGWCC	1 cut(s)	513
XhoI	CTCGAG	1 cut(s)	755
XspI	CTAG	3 cut(s)	80, 179, 531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.