Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001757

Physical Location & Seq

Genomic Coordinates Forward (+)

54346381 .. 54362484

Gene Structure 16104 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG355000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGAGGCGAAGGCAATGGTCTGATCTTCCTCCTGAACTTATCACAGACATAGCAGAACGTCTAGGCCTACTCGAGGTTGTGAGGTTCCGCAGCATATGCCAGGCTTGGAACTCTGCTTCTTCTACAATTTCAGCTAAAATTGAATCTTTACTAAACTATAAACCTTGGTTTCTACATTATGGGTATGATTCTGCCCAATGTCAGTTGGTAACTACTGAGAGTGGTAACATTACCATGAATCTTCCGCAACTGGATCAAACTACAACTTGCATTGCATCGTATGAAGGATGGCTTCTTGTATTTAAACAAGGCGGATCAATGTTCTTCTTTCGTCCCTTCTCAAAAACAAAGATAGACCTTCCCAATTTCCCAGTCTCAGAACTCACTGACCATGTTGCAGCATTTTCATCTCCTCCCACATCTCCTGACTGCACAGTTTGTGTCATCAACCGCAGTACTAGCAATGACAATGAGTTGGAGCTTAATCTACTTTGTCGTGGAGGAGGCAATGGATGGATCCAACACAAGCTTGACTGTCCGCGATTCTCCATTGATACAATCAAATGTGCTGCTTATAGCAAACTAGGAGAATTCTCCTTTTTGGACCATGGTGATAACAAACTCAAGTTATCAGTTACACACAACAGAGAAATTTGCTGGAAGAATAATAAAGTAGTTGAGGCGAAAGATGACTTACCAGGAAATTTTTATTATCAGATGGAATATTTCAAGAAAACAGACATGATGAACAAGCTGGGGTTAGCAGCTCTTCATGAGGATGTTTCGTTTTCTGTTTGCGGAACACAGACAGAGTATAATGGTACCGACTATTTTATATATAATGAGATTTATAGTATCAGTAATCATCATGAAGAGTCCAATAGCCCGCGGAAATTCAAAGGTGTATGGATCTACCCGAGATTCTATCAAATCTCTCCAAGAGAGCAGAGTTGGTCTGATGATGAGAACATGGCCACTCCATCAGAACAGCTGCTGGCAAGCAATGAATACGTACATTATTGCTACTATATCACATTCCAAGTGTCTAGGCATCGGACTCTTATGAATGTATTCGATAAAGCTCCTGTTCTTGACGAGGATGCATTTGTGGCCCCAAGTGCCTCCGTCATTGGTGATGTTCAAGTGGGAAGAGGATCTTCTATTTGGTCTGGATGTGTATTGAGAGGTGAGAACTTCTTGGATTACATGTTCTTTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

406

Amino Acids

46.51

Weight (kDa)

5.43

Isoelectric Point (pI)

43.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	6 - 41	3.9e-06	F-box domain
Beta-prop_KIB1-4	PF03478	78 - 185	5.3e-13	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001757)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24380 FvH4_2g24390 FvH4_2g24391 FvH4_2g24410 FvH4_2g24671 FvH4_2g24690 FvH4_2g24690 FvH4_2g24690 FvH4_2g24700
malus_domestica	MD11G1297700.v1.1
prunus_persica	Prupe.4G274600_v2.0.a1 Prupe.8G252000_v2.0.a1
pyrus_communis	pycom06g03770
rosa_chinensis	RchiOBHm_Chr6g0292521 RchiOBHm_Chr6g0292531
rosa_laevigata	RLG00000012013 RLG00000012014 RLG00000012015 RLG00000012016 RLG00000012017 RLG00000012049
rosa_multiflora	Rmu_sc0001354.1_g000031 Rmu_sc0001354.1_g000032 Rmu_sc0003908.1_g000003
rosa_roxburghii	Rroxscaffold_7G00174980 Rroxscaffold_7G00175290
rosa_rugosa	Rorug06G0224900 Rorug06G0227400 Rorug06G0227500
rosa_samantha	Rh4AG099200 Rh4CG108900 Rh4CG412100 Rh4DG094200 Rh6AG338000 Rh6AG340600 Rh6AG340700 Rh6BG345300 Rh6BG348000 Rh6BG348100 Rh6BG348200 Rh6CG352300 Rh6CG354900 Rh6CG355000 Rh6DG338300 Rh6DG340700 Rh6DG340800
rosa_wichuraiana	Rw6G029670 Rw6G029680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	821
AccB1I	GGYRCC	1 cut(s)	821
AccII	CGCG	2 cut(s)	541, 889
AciI	CCGC	8 cut(s)	88, 245, 312, 451, 539, 798, 887, 889
AclWI	GGATC	6 cut(s)	261, 322, 511, 524, 917, 1162
AcoI	YGGCCR	1 cut(s)	972
AcsI	RAATTY	4 cut(s)	590, 651, 703, 893
AfaI	GTAC	3 cut(s)	457, 823, 1014
AfiI	CCNNNNNNNGG	1 cut(s)	73
AflIII	ACRYGT	1 cut(s)	1206
AgsI	TTSAA	4 cut(s)	143, 730, 898, 1142
AjnI	CCWGG	2 cut(s)	99, 697
AloI	GAACNNNNNNTCC	1 cut(s)	1193
AluBI	AGCT	7 cut(s)	134, 481, 529, 754, 767, 991, 1082
AluI	AGCT	7 cut(s)	134, 481, 529, 754, 767, 991, 1082
Alw26I	GTCTC	1 cut(s)	379
AlwI	GGATC	6 cut(s)	261, 322, 511, 524, 917, 1162
AlwNI	CAGNNNCTG	1 cut(s)	994
Ama87I	CYCGRG	2 cut(s)	71, 916
AoxI	GGCC	3 cut(s)	64, 972, 1110
ApeKI	GCWGC	5 cut(s)	90, 398, 569, 764, 991
ApoI	RAATTY	4 cut(s)	590, 651, 703, 893
Asp700I	GAANNNNTTC	1 cut(s)	1070
Asp718I	GGTACC	1 cut(s)	821
AspS9I	GGNCC	2 cut(s)	604, 1111
AsuHPI	GGTGA	3 cut(s)	623, 1145, 1199
AvaI	CYCGRG	2 cut(s)	71, 916
AvaII	GGWCC	1 cut(s)	604
BalI	TGGCCA	1 cut(s)	974
BamHI	GGATCC	1 cut(s)	516
BanI	GGYRCC	1 cut(s)	821
BbvI	GCAGC	5 cut(s)	102, 410, 556, 776, 978
BccI	CCATC	4 cut(s)	282, 507, 712, 988
BciT130I	CCWGG	2 cut(s)	101, 699
BcoDI	GTCTC	1 cut(s)	379
BfaI	CTAG	4 cut(s)	62, 459, 584, 1047
BisI	GCNGC	5 cut(s)	91, 399, 570, 765, 992
BlsI	GCNGC	5 cut(s)	92, 400, 571, 766, 993
BmcAI	AGTACT	1 cut(s)	457
Bme1390I	CCNGG	2 cut(s)	101, 699
Bme18I	GGWCC	1 cut(s)	604
BmeT110I	CYCGRG	2 cut(s)	71, 916
BmgT120I	GGNCC	2 cut(s)	604, 1111
BmiI	GGNNCC	4 cut(s)	86, 518, 823, 1113
BmrFI	CCNGG	2 cut(s)	101, 699
BmrI	ACTGGG	1 cut(s)	365
BmsI	GCATC	3 cut(s)	284, 1060, 1090
BmuI	ACTGGG	1 cut(s)	365
BpuEI	CTTGAG	1 cut(s)	608
BsaAI	YACGTR	1 cut(s)	1012
BsaJI	CCNNGG	3 cut(s)	164, 607, 887
Bsc4I	CCNNNNNNNGG	1 cut(s)	73
Bse1I	ACTGG	2 cut(s)	255, 371
Bse3DI	GCAATG	5 cut(s)	20, 270, 469, 514, 1009
BseBI	CCWGG	2 cut(s)	101, 699
BseDI	CCNNGG	3 cut(s)	164, 607, 887
BseGI	GGATG	5 cut(s)	293, 518, 784, 1105, 1178
BseLI	CCNNNNNNNGG	1 cut(s)	73
BseMI	GCAATG	5 cut(s)	20, 270, 469, 514, 1009
BseMII	CTCAG	2 cut(s)	207, 390
BseNI	ACTGG	2 cut(s)	255, 371
BseRI	GAGGAG	2 cut(s)	402, 516
BseXI	GCAGC	5 cut(s)	102, 410, 556, 776, 978
BseYI	CCCAGC	1 cut(s)	754
BsgI	GTGCAG	1 cut(s)	415
Bsh1236I	CGCG	2 cut(s)	541, 889
BshFI	GGCC	3 cut(s)	66, 974, 1112
BshNI	GGYRCC	1 cut(s)	821
BsiHKCI	CYCGRG	2 cut(s)	71, 916
BslFI	GGGAC	1 cut(s)	318
BslI	CCNNNNNNNGG	1 cut(s)	73
BsmAI	GTCTC	1 cut(s)	379
BsmFI	GGGAC	1 cut(s)	318
BsnI	GGCC	3 cut(s)	66, 974, 1112
BsoBI	CYCGRG	2 cut(s)	71, 916
Bsp143I	GATC	6 cut(s)	22, 253, 314, 516, 909, 1154
Bsp19I	CCATGG	1 cut(s)	607
BspACI	CCGC	8 cut(s)	88, 245, 312, 451, 539, 798, 887, 889
BspANI	GGCC	3 cut(s)	66, 974, 1112
BspCNI	CTCAG	2 cut(s)	208, 389
BspFNI	CGCG	2 cut(s)	541, 889
BspHI	TCATGA	2 cut(s)	772, 868
BspLI	GGNNCC	4 cut(s)	86, 518, 823, 1113
BspPI	GGATC	6 cut(s)	261, 322, 511, 524, 917, 1162
BspQI	GCTCTTC	1 cut(s)	774
BspT107I	GGYRCC	1 cut(s)	821
BsrDI	GCAATG	5 cut(s)	20, 270, 469, 514, 1009
BsrI	ACTGG	2 cut(s)	255, 371
BssECI	CCNNGG	3 cut(s)	164, 607, 887
BssMI	GATC	6 cut(s)	22, 253, 314, 516, 909, 1154
BssT1I	CCWWGG	2 cut(s)	164, 607
Bst2UI	CCWGG	2 cut(s)	101, 699
Bst4CI	ACNGT	2 cut(s)	436, 536
Bst6I	CTCTTC	3 cut(s)	774, 867, 1144
BstAPI	GCANNNNNTGC	1 cut(s)	96
BstBAI	YACGTR	1 cut(s)	1012
BstC8I	GCNNGC	3 cut(s)	887, 996, 1000
BstDEI	CTNAG	2 cut(s)	216, 376
BstDSI	CCRYGG	2 cut(s)	607, 887
BstENI	CCTNNNNNAGG	1 cut(s)	71
BstF5I	GGATG	5 cut(s)	293, 518, 784, 1105, 1178
BstFNI	CGCG	2 cut(s)	541, 889
BstKTI	GATC	6 cut(s)	25, 256, 317, 519, 912, 1157
BstMAI	GTCTC	1 cut(s)	379
BstMBI	GATC	6 cut(s)	22, 253, 314, 516, 909, 1154
BstMWI	GCNNNNNNNGC	4 cut(s)	96, 459, 1109, 1118
BstNI	CCWGG	2 cut(s)	101, 699
BstNSI	RCATGY	1 cut(s)	1210
BstSCI	CCNGG	2 cut(s)	99, 697
BstSNI	TACGTA	1 cut(s)	1012
BstUI	CGCG	2 cut(s)	541, 889
BstV1I	GCAGC	5 cut(s)	102, 410, 556, 776, 978
BstX2I	RGATCY	3 cut(s)	516, 909, 1154
BstYI	RGATCY	3 cut(s)	516, 909, 1154
BsuRI	GGCC	3 cut(s)	66, 974, 1112
BtgI	CCRYGG	2 cut(s)	607, 887
BtsCI	GGATG	5 cut(s)	293, 518, 784, 1105, 1178
BtsIMutI	CAGTG	1 cut(s)	384
Cac8I	GCNNGC	3 cut(s)	887, 996, 1000
CaiI	CAGNNNCTG	1 cut(s)	994
CciI	TCATGA	2 cut(s)	772, 868
Cfr13I	GGNCC	2 cut(s)	604, 1111
Cfr42I	CCGCGG	1 cut(s)	890
Csp6I	GTAC	3 cut(s)	456, 822, 1013
CviAII	CATG	8 cut(s)	235, 392, 608, 742, 773, 869, 970, 1207
CviQI	GTAC	3 cut(s)	456, 822, 1013
DdeI	CTNAG	2 cut(s)	216, 376
DpnI	GATC	6 cut(s)	24, 255, 316, 518, 911, 1156
DpnII	GATC	6 cut(s)	22, 253, 314, 516, 909, 1154
DraI	TTTAAA	1 cut(s)	304
EaeI	YGGCCR	1 cut(s)	972
Eam1104I	CTCTTC	3 cut(s)	774, 867, 1144
EarI	CTCTTC	3 cut(s)	774, 867, 1144
EciI	GGCGGA	1 cut(s)	327
Eco105I	TACGTA	1 cut(s)	1012
Eco130I	CCWWGG	2 cut(s)	164, 607
Eco147I	AGGCCT	1 cut(s)	66
Eco47I	GGWCC	1 cut(s)	604
Eco88I	CYCGRG	2 cut(s)	71, 916
EcoNI	CCTNNNNNAGG	1 cut(s)	71
EcoRI	GAATTC	1 cut(s)	590
EcoRII	CCWGG	2 cut(s)	99, 697
EcoT14I	CCWWGG	2 cut(s)	164, 607
EcoT22I	ATGCAT	1 cut(s)	1105
ErhI	CCWWGG	2 cut(s)	164, 607
FaeI	CATG	8 cut(s)	238, 395, 611, 745, 776, 872, 973, 1210
FalI	AAGNNNNNCTT	4 cut(s)	276, 308, 1141, 1173
FaqI	GGGAC	1 cut(s)	318
FatI	CATG	8 cut(s)	234, 391, 607, 741, 772, 868, 969, 1206
FauI	CCCGC	1 cut(s)	894
FauNDI	CATATG	1 cut(s)	95
Fnu4HI	GCNGC	5 cut(s)	91, 399, 570, 765, 992
FokI	GGATG	5 cut(s)	300, 525, 791, 1112, 1185
Fsp4HI	GCNGC	5 cut(s)	91, 399, 570, 765, 992
FspBI	CTAG	4 cut(s)	62, 459, 584, 1047
GluI	GCNGC	5 cut(s)	91, 399, 570, 765, 992
GsaI	CCCAGC	1 cut(s)	758
HaeIII	GGCC	3 cut(s)	66, 974, 1112
Hin1II	CATG	8 cut(s)	238, 395, 611, 745, 776, 872, 973, 1210
HindIII	AAGCTT	1 cut(s)	527
HinfI	GANTC	7 cut(s)	143, 188, 238, 543, 875, 921, 1057
HphI	GGTGA	3 cut(s)	623, 1145, 1199
Hpy188I	TCNGA	6 cut(s)	22, 379, 717, 958, 985, 1056
Hpy188III	TCNNGA	7 cut(s)	32, 425, 730, 773, 869, 1091, 1170
HpyAV	CCTTC	4 cut(s)	3, 278, 346, 368
HpyCH4III	ACNGT	2 cut(s)	436, 536
HpyCH4IV	ACGT	2 cut(s)	58, 1011
HpyCH4V	TGCA	5 cut(s)	270, 275, 398, 432, 1103
HpyF10VI	GCNNNNNNNGC	4 cut(s)	96, 459, 1109, 1118
HpyF3I	CTNAG	2 cut(s)	216, 376
HpySE526I	ACGT	2 cut(s)	58, 1011
Hsp92II	CATG	8 cut(s)	238, 395, 611, 745, 776, 872, 973, 1210
KpnI	GGTACC	1 cut(s)	825
KspI	CCGCGG	1 cut(s)	890
Kzo9I	GATC	6 cut(s)	22, 253, 314, 516, 909, 1154
LguI	GCTCTTC	1 cut(s)	774
LmnI	GCTCC	2 cut(s)	478, 1087
Lsp1109I	GCAGC	5 cut(s)	102, 410, 556, 776, 978
LweI	GCATC	3 cut(s)	284, 1060, 1090
MaeI	CTAG	4 cut(s)	62, 459, 584, 1047
MaeII	ACGT	2 cut(s)	58, 1011
MaeIII	GTNAC	3 cut(s)	208, 224, 634
MalI	GATC	6 cut(s)	24, 255, 316, 518, 911, 1156
MboI	GATC	6 cut(s)	22, 253, 314, 516, 909, 1154
MboII	GAAGA	9 cut(s)	17, 111, 233, 316, 673, 761, 884, 1149, 1161
MflI	RGATCY	3 cut(s)	516, 909, 1154
MlsI	TGGCCA	1 cut(s)	974
MluCI	AATT	7 cut(s)	126, 138, 364, 590, 651, 703, 893
MluNI	TGGCCA	1 cut(s)	974
MlyI	GAGTC	2 cut(s)	884, 1051
MmeI	TCCRAC	2 cut(s)	456, 544
Mox20I	TGGCCA	1 cut(s)	974
Mph1103I	ATGCAT	1 cut(s)	1105
MroXI	GAANNNNTTC	1 cut(s)	1070
MscI	TGGCCA	1 cut(s)	974
MseI	TTAA	2 cut(s)	303, 483
MslI	CAYNNNNRTG	2 cut(s)	233, 777
Msp20I	TGGCCA	1 cut(s)	974
MspA1I	CMGCKG	2 cut(s)	889, 991
MspR9I	CCNGG	2 cut(s)	101, 699
MvaI	CCWGG	2 cut(s)	101, 699
MvnI	CGCG	2 cut(s)	541, 889
MwoI	GCNNNNNNNGC	4 cut(s)	96, 459, 1109, 1118
NcoI	CCATGG	1 cut(s)	607
NdeI	CATATG	1 cut(s)	95
NdeII	GATC	6 cut(s)	22, 253, 314, 516, 909, 1154
NlaIII	CATG	8 cut(s)	238, 395, 611, 745, 776, 872, 973, 1210
NlaIV	GGNNCC	4 cut(s)	86, 518, 823, 1113
NsiI	ATGCAT	1 cut(s)	1105
NspI	RCATGY	1 cut(s)	1210
PaeR7I	CTCGAG	1 cut(s)	71
PagI	TCATGA	2 cut(s)	772, 868
PceI	AGGCCT	1 cut(s)	66
PciI	ACATGT	1 cut(s)	1206
PciSI	GCTCTTC	1 cut(s)	774
PdmI	GAANNNNTTC	1 cut(s)	1070
PfeI	GAWTC	5 cut(s)	143, 188, 238, 543, 921
PkrI	GCNGC	5 cut(s)	92, 400, 571, 766, 993
PleI	GAGTC	2 cut(s)	883, 1051
PpsI	GAGTC	2 cut(s)	883, 1051
Ppu21I	YACGTR	1 cut(s)	1012
PscI	ACATGT	1 cut(s)	1206
Psp6I	CCWGG	2 cut(s)	99, 697
PspFI	CCCAGC	1 cut(s)	754
PspGI	CCWGG	2 cut(s)	99, 697
PspN4I	GGNNCC	4 cut(s)	86, 518, 823, 1113
PspPI	GGNCC	2 cut(s)	604, 1111
PspXI	VCTCGAGB	1 cut(s)	71
PstNI	CAGNNNCTG	1 cut(s)	994
PsuI	RGATCY	3 cut(s)	516, 909, 1154
PvuII	CAGCTG	1 cut(s)	991
RsaI	GTAC	3 cut(s)	457, 823, 1014
RsaNI	GTAC	3 cut(s)	456, 822, 1013
RseI	CAYNNNNRTG	2 cut(s)	233, 777
SacII	CCGCGG	1 cut(s)	890
SapI	GCTCTTC	1 cut(s)	774
SaqAI	TTAA	2 cut(s)	303, 483
SatI	GCNGC	5 cut(s)	91, 399, 570, 765, 992
Sau3AI	GATC	6 cut(s)	22, 253, 314, 516, 909, 1154
Sau96I	GGNCC	2 cut(s)	604, 1111
ScaI	AGTACT	1 cut(s)	457
SchI	GAGTC	2 cut(s)	884, 1051
ScrFI	CCNGG	2 cut(s)	101, 699
SfaNI	GCATC	3 cut(s)	284, 1060, 1090
Sfr274I	CTCGAG	1 cut(s)	71
Sfr303I	CCGCGG	1 cut(s)	890
SgrBI	CCGCGG	1 cut(s)	890
SinI	GGWCC	1 cut(s)	604
SlaI	CTCGAG	1 cut(s)	71
SmiMI	CAYNNNNRTG	2 cut(s)	233, 777
SmlI	CTYRAG	2 cut(s)	71, 623
SmoI	CTYRAG	2 cut(s)	71, 623
SnaBI	TACGTA	1 cut(s)	1012
Sse9I	AATT	7 cut(s)	126, 138, 364, 590, 651, 703, 893
SseBI	AGGCCT	1 cut(s)	66
SsiI	CCGC	8 cut(s)	88, 245, 312, 451, 539, 798, 887, 889
SspI	AATATT	1 cut(s)	725
SspMI	CTAG	4 cut(s)	62, 459, 584, 1047
StuI	AGGCCT	1 cut(s)	66
StyD4I	CCNGG	2 cut(s)	99, 697
StyI	CCWWGG	2 cut(s)	164, 607
TaaI	ACNGT	2 cut(s)	436, 536
TaiI	ACGT	2 cut(s)	61, 1014
TaqI	TCGA	2 cut(s)	72, 1074
TasI	AATT	7 cut(s)	126, 138, 364, 590, 651, 703, 893
TatI	WGTACW	1 cut(s)	455
TfiI	GAWTC	5 cut(s)	143, 188, 238, 543, 921
Tru1I	TTAA	2 cut(s)	303, 483
Tru9I	TTAA	2 cut(s)	303, 483
TscAI	CASTG	1 cut(s)	391
TseI	GCWGC	5 cut(s)	90, 398, 569, 764, 991
TspDTI	ATGAA	8 cut(s)	251, 297, 396, 761, 761, 885, 1020, 1079
TspGWI	ACGGA	1 cut(s)	1114
TspRI	CASTG	1 cut(s)	391
VpaK11BI	GGWCC	1 cut(s)	604
XagI	CCTNNNNNAGG	1 cut(s)	71
XapI	RAATTY	4 cut(s)	590, 651, 703, 893
XceI	RCATGY	1 cut(s)	1210
XhoI	CTCGAG	1 cut(s)	71
XmnI	GAANNNNTTC	1 cut(s)	1070
XspI	CTAG	4 cut(s)	62, 459, 584, 1047
ZrmI	AGTACT	1 cut(s)	457
Zsp2I	ATGCAT	1 cut(s)	1105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.