RLG00000012017

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0001757
Physical Location & Seq
Reverse (-)
14593398 .. 14593916
519 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012017

Sequence Viewer

Length: 519 bp
ATGCAAAAGGAAAGTAGGGACTGGTCCGATCTCCCTCCTGAACTTCTTTTACTCATAGCAGAACGTGCAGGTCTATTCGCGCTTCAGAGTTTCCATCGTGTTTGTAAGGCTTGGAACTCTGCTTCTTCTACAGTTTTACCTCAGATACTTGAGACAGAAGTAAACCAAGGACCTTGGTTTTTAGTACATGATGATAAAGGTTCTAAGTGCAAGGTGCTAACTGGAAGTGGCAAGAAGTTGATAATGAGTCGCCCAGAACTGGATAGAACAACTTGCCTTGCAACATACCAAGGATGGCTTCTTCTGTTCCAACAAGGATGTGGTTCCATCTTCTTCTTTCACCTTTCCTCTCGTCGCAGAATAGACCTTCCACAGTTCCCGGACTCGGAACTCGCTGATCATGTTGCAGCAGTTTCATGTTCTCCAACGTCTCAGGATTGTATGGTTTGTGTTATTAGTCGTAGCAATGATGCTGAATTGGAAACCAAGGTACTATACCTTGGAGAAGACCAGGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

173

Amino Acids

19.26

Weight (kDa)

5.54

Isoelectric Point (pI)

56.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 83 - 161 7e-10 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 59
AccII CGCG 1 cut(s) 80
AcuI CTGAAG 1 cut(s) 68
AfaI GTAC 2 cut(s) 186, 492
AfiI CCNNNNNNNGG 2 cut(s) 259, 385
AjnI CCWGG 1 cut(s) 510
AjuI GAANNNNNNNTTGG 2 cut(s) 282, 314
Alw26I GTCTC 2 cut(s) 146, 435
ApeKI GCWGC 1 cut(s) 407
AspLEI GCGC 1 cut(s) 82
AspS9I GGNCC 2 cut(s) 24, 170
AsuC2I CCSGG 1 cut(s) 380
AsuHPI GGTGA 1 cut(s) 332
AvaII GGWCC 2 cut(s) 24, 170
BbsI GAAGAC 1 cut(s) 513
BbvI GCAGC 1 cut(s) 419
BccI CCATC 3 cut(s) 102, 288, 335
BciT130I CCWGG 1 cut(s) 512
BclI TGATCA 1 cut(s) 397
BcnI CCSGG 1 cut(s) 380
BcoDI GTCTC 2 cut(s) 146, 435
BfmI CTRYAG 1 cut(s) 129
BfuAI ACCTGC 1 cut(s) 59
BisI GCNGC 1 cut(s) 408
BlsI GCNGC 1 cut(s) 409
Bme1390I CCNGG 2 cut(s) 380, 512
Bme18I GGWCC 2 cut(s) 24, 170
BmgT120I GGNCC 2 cut(s) 24, 170
BmiI GGNNCC 1 cut(s) 325
BmrFI CCNGG 2 cut(s) 380, 512
BmsI GCATC 1 cut(s) 460
BpiI GAAGAC 1 cut(s) 513
BpuEI CTTGAG 1 cut(s) 170
BpuMI CCSGG 1 cut(s) 380
BsaJI CCNNGG 5 cut(s) 166, 173, 289, 486, 499
Bsc4I CCNNNNNNNGG 2 cut(s) 259, 385
Bse1I ACTGG 3 cut(s) 26, 226, 264
Bse3DI GCAATG 1 cut(s) 472
BseBI CCWGG 1 cut(s) 512
BseDI CCNNGG 5 cut(s) 166, 173, 289, 486, 499
BseGI GGATG 2 cut(s) 299, 323
BseLI CCNNNNNNNGG 2 cut(s) 259, 385
BseMI GCAATG 1 cut(s) 472
BseMII CTCAG 2 cut(s) 155, 446
BseNI ACTGG 3 cut(s) 26, 226, 264
BseXI GCAGC 1 cut(s) 419
BsgI GTGCAG 1 cut(s) 87
Bsh1236I CGCG 1 cut(s) 80
BsiSI CCGG 1 cut(s) 380
BslFI GGGAC 1 cut(s) 32
BslI CCNNNNNNNGG 2 cut(s) 259, 385
BsmAI GTCTC 2 cut(s) 146, 435
BsmBI CGTCTC 1 cut(s) 435
BsmFI GGGAC 1 cut(s) 32
Bsp143I GATC 2 cut(s) 28, 397
BspCNI CTCAG 2 cut(s) 154, 445
BspFNI CGCG 1 cut(s) 80
BspLI GGNNCC 1 cut(s) 325
BspMI ACCTGC 1 cut(s) 59
BsrDI GCAATG 1 cut(s) 472
BsrI ACTGG 3 cut(s) 26, 226, 264
BssECI CCNNGG 5 cut(s) 166, 173, 289, 486, 499
BssMI GATC 2 cut(s) 28, 397
BssT1I CCWWGG 5 cut(s) 166, 173, 289, 486, 499
Bst2UI CCWGG 1 cut(s) 512
Bst4CI ACNGT 2 cut(s) 133, 375
BstAPI GCANNNNNTGC 1 cut(s) 65
BstDEI CTNAG 3 cut(s) 141, 204, 432
BstF5I GGATG 2 cut(s) 299, 323
BstFNI CGCG 1 cut(s) 80
BstHHI GCGC 1 cut(s) 82
BstKTI GATC 2 cut(s) 31, 400
BstMAI GTCTC 2 cut(s) 146, 435
BstMBI GATC 2 cut(s) 28, 397
BstMWI GCNNNNNNNGC 1 cut(s) 65
BstNI CCWGG 1 cut(s) 512
BstSCI CCNGG 2 cut(s) 378, 510
BstSFI CTRYAG 1 cut(s) 129
BstUI CGCG 1 cut(s) 80
BstV1I GCAGC 1 cut(s) 419
BstV2I GAAGAC 1 cut(s) 513
BtsCI GGATG 2 cut(s) 299, 323
BveI ACCTGC 1 cut(s) 59
CfoI GCGC 1 cut(s) 82
Cfr13I GGNCC 2 cut(s) 24, 170
Csp6I GTAC 2 cut(s) 185, 491
CviAII CATG 3 cut(s) 188, 401, 417
CviJI RGCY 2 cut(s) 110, 298
CviKI_1 RGCY 2 cut(s) 110, 298
CviQI GTAC 2 cut(s) 185, 491
DdeI CTNAG 3 cut(s) 141, 204, 432
DpnI GATC 2 cut(s) 30, 399
DpnII GATC 2 cut(s) 28, 397
Eco130I CCWWGG 5 cut(s) 166, 173, 289, 486, 499
Eco47I GGWCC 2 cut(s) 24, 170
Eco57I CTGAAG 1 cut(s) 68
EcoO109I RGGNCCY 1 cut(s) 170
EcoRII CCWGG 1 cut(s) 510
EcoT14I CCWWGG 5 cut(s) 166, 173, 289, 486, 499
ErhI CCWWGG 5 cut(s) 166, 173, 289, 486, 499
Esp3I CGTCTC 1 cut(s) 435
FaeI CATG 3 cut(s) 191, 404, 420
FaiI YATR 8 cut(s) 56, 189, 286, 402, 418, 443, 496, 517
FalI AAGNNNNNCTT 2 cut(s) 282, 314
FaqI GGGAC 1 cut(s) 32
FatI CATG 3 cut(s) 187, 400, 416
FbaI TGATCA 1 cut(s) 397
Fnu4HI GCNGC 1 cut(s) 408
FokI GGATG 2 cut(s) 306, 330
Fsp4HI GCNGC 1 cut(s) 408
GlaI GCGC 1 cut(s) 81
GluI GCNGC 1 cut(s) 408
HapII CCGG 1 cut(s) 380
HhaI GCGC 1 cut(s) 82
Hin1II CATG 3 cut(s) 191, 404, 420
Hin6I GCGC 1 cut(s) 80
HinP1I GCGC 1 cut(s) 80
HinfI GANTC 2 cut(s) 247, 383
HpaII CCGG 1 cut(s) 380
HphI GGTGA 1 cut(s) 332
Hpy166II GTNNAC 1 cut(s) 163
Hpy188I TCNGA 4 cut(s) 28, 87, 144, 388
Hpy188III TCNNGA 2 cut(s) 38, 434
Hpy8I GTNNAC 1 cut(s) 163
Hpy99I CGWCG 1 cut(s) 357
HpyAV CCTTC 1 cut(s) 377
HpyCH4III ACNGT 2 cut(s) 133, 375
HpyCH4IV ACGT 2 cut(s) 64, 428
HpyCH4V TGCA 5 cut(s) 4, 68, 210, 281, 407
HpyF10VI GCNNNNNNNGC 1 cut(s) 65
HpyF3I CTNAG 3 cut(s) 141, 204, 432
HpySE526I ACGT 2 cut(s) 64, 428
Hsp92II CATG 3 cut(s) 191, 404, 420
HspAI GCGC 1 cut(s) 80
Ksp22I TGATCA 1 cut(s) 397
Kzo9I GATC 2 cut(s) 28, 397
LpnPI CCDG 9 cut(s) 7, 51, 54, 207, 245, 267, 393, 419, 497
Lsp1109I GCAGC 1 cut(s) 419
LweI GCATC 1 cut(s) 460
MaeII ACGT 2 cut(s) 64, 428
MalI GATC 2 cut(s) 30, 399
MboI GATC 2 cut(s) 28, 397
MboII GAAGA 5 cut(s) 117, 293, 322, 325, 518
MluCI AATT 1 cut(s) 476
MlyI GAGTC 2 cut(s) 256, 377
MmeI TCCRAC 2 cut(s) 334, 449
MnlI CCTC 3 cut(s) 45, 150, 358
MspI CCGG 1 cut(s) 380
MspR9I CCNGG 2 cut(s) 380, 512
MvaI CCWGG 1 cut(s) 512
MvnI CGCG 1 cut(s) 80
MwoI GCNNNNNNNGC 1 cut(s) 65
NciI CCSGG 1 cut(s) 380
NdeII GATC 2 cut(s) 28, 397
NlaIII CATG 3 cut(s) 191, 404, 420
NlaIV GGNNCC 1 cut(s) 325
PfoI TCCNGGA 1 cut(s) 378
PkrI GCNGC 1 cut(s) 409
PleI GAGTC 2 cut(s) 255, 377
PpsI GAGTC 2 cut(s) 255, 377
PpuMI RGGWCCY 1 cut(s) 170
Psp5II RGGWCCY 1 cut(s) 170
Psp6I CCWGG 1 cut(s) 510
PspGI CCWGG 1 cut(s) 510
PspN4I GGNNCC 1 cut(s) 325
PspPI GGNCC 2 cut(s) 24, 170
PspPPI RGGWCCY 1 cut(s) 170
PsrI GAACNNNNNNTAC 2 cut(s) 33, 65
RsaI GTAC 2 cut(s) 186, 492
RsaNI GTAC 2 cut(s) 185, 491
SatI GCNGC 1 cut(s) 408
Sau3AI GATC 2 cut(s) 28, 397
Sau96I GGNCC 2 cut(s) 24, 170
SchI GAGTC 2 cut(s) 256, 377
ScrFI CCNGG 2 cut(s) 380, 512
SfaNI GCATC 1 cut(s) 460
SfcI CTRYAG 1 cut(s) 129
SinI GGWCC 2 cut(s) 24, 170
SmlI CTYRAG 1 cut(s) 149
SmoI CTYRAG 1 cut(s) 149
Sse9I AATT 1 cut(s) 476
StyD4I CCNGG 2 cut(s) 378, 510
StyI CCWWGG 5 cut(s) 166, 173, 289, 486, 499
TaaI ACNGT 2 cut(s) 133, 375
TaiI ACGT 2 cut(s) 67, 431
TasI AATT 1 cut(s) 476
TatI WGTACW 1 cut(s) 184
TseI GCWGC 1 cut(s) 407
TspDTI ATGAA 1 cut(s) 405
VpaK11BI GGWCC 2 cut(s) 24, 170
XcmI CCANNNNNNNNNTGG 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.