Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001757

Physical Location & Seq

Genomic Coordinates Forward (+)

54393297 .. 54404370

Gene Structure 11074 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG340800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1416 bp

ATGAGGCGAAGGCAATGGTCTGATCTTCCTCCTGAACTTATCACAGACGTAGCAGAACGTCTAGGCCTACTCGAGGTTGTGAGGTTCCGCAGCATATGCCAGGCTTGGAACTCTGCTTCTTCTACAATTTCAGCTAAAATTGAATCTTTACTAAACTATAAACCTTGGTTTCTACATTATGGGTATGATTCTGCCCAATGTCAGTTGGTAACTACTGAAAGTGGTAACATTACCATGAATCTTCCGCAACTGGATCAAACTACAACTTGCATTGCATCGTATGAAGGATGGCTTCTTGTATTTAAACAAGGCGGATCAATGTTCTTCTTTCGTCCCTTCTCAAAAACAAAGATAGACCTTCCCAATTTCCCAGTCTCAGAACTCACTGACCATGTTGCAGCATTTTCATCTCCTCCCACATCTCCTGACTGCACAGTTTGTGTCATCAACCGCAGTCCTAGCAATGACAATGAGTTGGAGCTTAATCTACTTTGTCGCGGAGGAGGCAATGGATGGATCCAACACAAGCTTGACTGTCCGCGATTCTCCATTGATACAATCAAATGTGCTGCTTATAGCAAACTAGGAGAATTCTCCTTTTTGGACCATAGTGATAACAGACTCAAGTTATCAGTTACAGACAACAGAGAAATTTGCTGGAAGAATAATAAAGTAGTTGAGGCGAAAGATAACTTACCAGGAAATTTTTATTATCAGATGGAATATTTCAAGAAAACTGACATGATGAACAAGCTGGGGTTAGCAGATCTTCATGAGGATGTTTCGTTTTCTGTTTGCGGAACACAAACAGAGTATAATGGTACCGACTATTTTATATATAATGAGATTTATAGTATCAGTAATCATCATGAAGAGTCCAATAGCCCGCGGAAATTCAAAGGGGTATGGATCTACCCGAGATTCTATCAAATCTCTCCAAGAGAGCAGAGTTGCGTGTGCAAATCTTGGAAGTCTGCTTCTTCCACAGCTTCAGCTCAATCTTCAGCTAAACCCTGGTTTCTACTGTATGGGGAAAACAATTCTGAGTGCCAGTTGCTGAGTGAAAGTGATCATAAGTACACCATCAGTCTTCCAGAACTGGATGGAGCAAGACAACCAGAACTGGATGGAGCAACTTGTCTTGCTTCATCCCAAGGATGGTTGCTTGTATTCCAAGAAAGCTCGGGCTCATTGTTTTTGTTTTGCCCCTTCTCTCGGGCGAAAATAGACCTTCCCAACTTCCCAGCCTCACAACTCTCCGACCATATTGCAGCATTTTCATCTCCTCCGAATTCCCAAGATTGCATCCTTTGTGTCATTAGCCGTACCAATAATGATGAATGGGAGCTGAATTTACTTCGTCGGGGAGCCAATGAATGGACCAAACATAATTATTCTGGTTACTCAAAACTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

471

Amino Acids

53.47

Weight (kDa)

5.65

Isoelectric Point (pI)

48.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	78 - 205	1.1e-12	KIB1-4 beta-propeller
Beta-prop_KIB1-4	PF03478	358 - 466	2.4e-15	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001757)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24380 FvH4_2g24390 FvH4_2g24391 FvH4_2g24410 FvH4_2g24671 FvH4_2g24690 FvH4_2g24690 FvH4_2g24690 FvH4_2g24700
malus_domestica	MD11G1297700.v1.1
prunus_persica	Prupe.4G274600_v2.0.a1 Prupe.8G252000_v2.0.a1
pyrus_communis	pycom06g03770
rosa_chinensis	RchiOBHm_Chr6g0292521 RchiOBHm_Chr6g0292531
rosa_laevigata	RLG00000012013 RLG00000012014 RLG00000012015 RLG00000012016 RLG00000012017 RLG00000012049
rosa_multiflora	Rmu_sc0001354.1_g000031 Rmu_sc0001354.1_g000032 Rmu_sc0003908.1_g000003
rosa_roxburghii	Rroxscaffold_7G00174980 Rroxscaffold_7G00175290
rosa_rugosa	Rorug06G0224900 Rorug06G0227400 Rorug06G0227500
rosa_samantha	Rh4AG099200 Rh4CG108900 Rh4CG412100 Rh4DG094200 Rh6AG338000 Rh6AG340600 Rh6AG340700 Rh6BG345300 Rh6BG348000 Rh6BG348100 Rh6BG348200 Rh6CG352300 Rh6CG354900 Rh6CG355000 Rh6DG338300 Rh6DG340700 Rh6DG340800
rosa_wichuraiana	Rw6G029670 Rw6G029680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	821
AccB1I	GGYRCC	1 cut(s)	821
AccB7I	CCANNNNNTGG	1 cut(s)	1377
AccII	CGCG	3 cut(s)	498, 541, 889
AciI	CCGC	9 cut(s)	88, 245, 312, 451, 498, 539, 798, 887, 889
AclWI	GGATC	5 cut(s)	261, 322, 511, 524, 917
AcsI	RAATTY	6 cut(s)	590, 651, 703, 893, 1291, 1351
AcuI	CTGAAG	2 cut(s)	975, 987
AfaI	GTAC	3 cut(s)	823, 1079, 1327
AfiI	CCNNNNNNNGG	4 cut(s)	73, 1158, 1215, 1377
AgsI	TTSAA	3 cut(s)	143, 730, 898
AjnI	CCWGG	3 cut(s)	99, 697, 1013
AluBI	AGCT	9 cut(s)	134, 481, 529, 754, 989, 995, 1007, 1182, 1348
AluI	AGCT	9 cut(s)	134, 481, 529, 754, 989, 995, 1007, 1182, 1348
Alw26I	GTCTC	1 cut(s)	379
AlwI	GGATC	5 cut(s)	261, 322, 511, 524, 917
AlwNI	CAGNNNCTG	1 cut(s)	1057
Ama87I	CYCGRG	4 cut(s)	71, 916, 1183, 1215
AoxI	GGCC	1 cut(s)	64
ApeKI	GCWGC	4 cut(s)	90, 398, 569, 1271
ApoI	RAATTY	6 cut(s)	590, 651, 703, 893, 1291, 1351
Asp718I	GGTACC	1 cut(s)	821
AspS9I	GGNCC	2 cut(s)	604, 1380
AvaI	CYCGRG	4 cut(s)	71, 916, 1183, 1215
AvaII	GGWCC	2 cut(s)	604, 1380
BamHI	GGATCC	1 cut(s)	516
BanI	GGYRCC	1 cut(s)	821
BanII	GRGCYC	1 cut(s)	1190
BbsI	GAAGAC	1 cut(s)	1082
BbvI	GCAGC	4 cut(s)	102, 410, 556, 1283
BccI	CCATC	7 cut(s)	282, 507, 712, 1091, 1097, 1121, 1152
BceAI	ACGGC	1 cut(s)	1308
BcgI	CGANNNNNNTGC	2 cut(s)	1250, 1284
BciT130I	CCWGG	3 cut(s)	101, 699, 1015
BclI	TGATCA	1 cut(s)	1069
BcoDI	GTCTC	1 cut(s)	379
BfaI	CTAG	3 cut(s)	62, 459, 584
BfmI	CTRYAG	1 cut(s)	1412
BglII	AGATCT	1 cut(s)	766
BisI	GCNGC	4 cut(s)	91, 399, 570, 1272
BlsI	GCNGC	4 cut(s)	92, 400, 571, 1273
Bme1390I	CCNGG	3 cut(s)	101, 699, 1015
Bme18I	GGWCC	2 cut(s)	604, 1380
BmeT110I	CYCGRG	4 cut(s)	71, 916, 1183, 1215
BmgT120I	GGNCC	2 cut(s)	604, 1380
BmiI	GGNNCC	4 cut(s)	86, 518, 823, 1369
BmrFI	CCNGG	3 cut(s)	101, 699, 1015
BmrI	ACTGGG	1 cut(s)	365
BmsI	GCATC	2 cut(s)	284, 1314
BmuI	ACTGGG	1 cut(s)	365
BpiI	GAAGAC	1 cut(s)	1082
BpuEI	CTTGAG	1 cut(s)	608
BsaJI	CCNNGG	4 cut(s)	164, 887, 1013, 1153
Bsc4I	CCNNNNNNNGG	4 cut(s)	73, 1158, 1215, 1377
Bse1I	ACTGG	5 cut(s)	255, 371, 1051, 1104, 1128
Bse3DI	GCAATG	4 cut(s)	20, 270, 469, 514
BseBI	CCWGG	3 cut(s)	101, 699, 1015
BseDI	CCNNGG	4 cut(s)	164, 887, 1013, 1153
BseGI	GGATG	8 cut(s)	293, 518, 784, 1108, 1132, 1148, 1163, 1305
BseLI	CCNNNNNNNGG	4 cut(s)	73, 1158, 1215, 1377
BseMI	GCAATG	4 cut(s)	20, 270, 469, 514
BseMII	CTCAG	3 cut(s)	390, 1035, 1049
BseNI	ACTGG	5 cut(s)	255, 371, 1051, 1104, 1128
BseRI	GAGGAG	3 cut(s)	402, 516, 1275
BseXI	GCAGC	4 cut(s)	102, 410, 556, 1283
BseYI	CCCAGC	2 cut(s)	754, 1243
BsgI	GTGCAG	1 cut(s)	415
Bsh1236I	CGCG	3 cut(s)	498, 541, 889
BshFI	GGCC	1 cut(s)	66
BshNI	GGYRCC	1 cut(s)	821
BsiHKCI	CYCGRG	4 cut(s)	71, 916, 1183, 1215
BslFI	GGGAC	1 cut(s)	318
BslI	CCNNNNNNNGG	4 cut(s)	73, 1158, 1215, 1377
BsmAI	GTCTC	1 cut(s)	379
BsmFI	GGGAC	1 cut(s)	318
BsnI	GGCC	1 cut(s)	66
BsoBI	CYCGRG	4 cut(s)	71, 916, 1183, 1215
Bsp1286I	GDGCHC	1 cut(s)	1190
Bsp143I	GATC	7 cut(s)	22, 253, 314, 516, 766, 909, 1069
BspACI	CCGC	9 cut(s)	88, 245, 312, 451, 498, 539, 798, 887, 889
BspANI	GGCC	1 cut(s)	66
BspCNI	CTCAG	3 cut(s)	389, 1036, 1050
BspFNI	CGCG	3 cut(s)	498, 541, 889
BspHI	TCATGA	2 cut(s)	772, 868
BspLI	GGNNCC	4 cut(s)	86, 518, 823, 1369
BspPI	GGATC	5 cut(s)	261, 322, 511, 524, 917
BspT107I	GGYRCC	1 cut(s)	821
BsrDI	GCAATG	4 cut(s)	20, 270, 469, 514
BsrI	ACTGG	5 cut(s)	255, 371, 1051, 1104, 1128
BssECI	CCNNGG	4 cut(s)	164, 887, 1013, 1153
BssMI	GATC	7 cut(s)	22, 253, 314, 516, 766, 909, 1069
BssT1I	CCWWGG	2 cut(s)	164, 1153
Bst2UI	CCWGG	3 cut(s)	101, 699, 1015
Bst4CI	ACNGT	4 cut(s)	436, 536, 1026, 1413
Bst6I	CTCTTC	1 cut(s)	867
BstAPI	GCANNNNNTGC	1 cut(s)	96
BstC8I	GCNNGC	1 cut(s)	887
BstDEI	CTNAG	3 cut(s)	376, 1044, 1058
BstDSI	CCRYGG	1 cut(s)	887
BstENI	CCTNNNNNAGG	1 cut(s)	71
BstF5I	GGATG	8 cut(s)	293, 518, 784, 1108, 1132, 1148, 1163, 1305
BstFNI	CGCG	3 cut(s)	498, 541, 889
BstKTI	GATC	7 cut(s)	25, 256, 317, 519, 769, 912, 1072
BstMAI	GTCTC	1 cut(s)	379
BstMBI	GATC	7 cut(s)	22, 253, 314, 516, 766, 909, 1069
BstMWI	GCNNNNNNNGC	3 cut(s)	96, 459, 504
BstNI	CCWGG	3 cut(s)	101, 699, 1015
BstSCI	CCNGG	3 cut(s)	99, 697, 1013
BstSFI	CTRYAG	1 cut(s)	1412
BstUI	CGCG	3 cut(s)	498, 541, 889
BstV1I	GCAGC	4 cut(s)	102, 410, 556, 1283
BstV2I	GAAGAC	1 cut(s)	1082
BstX2I	RGATCY	3 cut(s)	516, 766, 909
BstYI	RGATCY	3 cut(s)	516, 766, 909
BsuRI	GGCC	1 cut(s)	66
BtgI	CCRYGG	1 cut(s)	887
BtsCI	GGATG	8 cut(s)	293, 518, 784, 1108, 1132, 1148, 1163, 1305
BtsIMutI	CAGTG	1 cut(s)	384
Cac8I	GCNNGC	1 cut(s)	887
CaiI	CAGNNNCTG	1 cut(s)	1057
CciI	TCATGA	2 cut(s)	772, 868
Cfr13I	GGNCC	2 cut(s)	604, 1380
Cfr42I	CCGCGG	1 cut(s)	890
Csp6I	GTAC	3 cut(s)	822, 1078, 1326
CviAII	CATG	5 cut(s)	235, 392, 742, 773, 869
CviQI	GTAC	3 cut(s)	822, 1078, 1326
DdeI	CTNAG	3 cut(s)	376, 1044, 1058
DpnI	GATC	7 cut(s)	24, 255, 316, 518, 768, 911, 1071
DpnII	GATC	7 cut(s)	22, 253, 314, 516, 766, 909, 1069
DraI	TTTAAA	1 cut(s)	304
Eam1104I	CTCTTC	1 cut(s)	867
EarI	CTCTTC	1 cut(s)	867
EciI	GGCGGA	1 cut(s)	327
Eco130I	CCWWGG	2 cut(s)	164, 1153
Eco147I	AGGCCT	1 cut(s)	66
Eco24I	GRGCYC	1 cut(s)	1190
Eco47I	GGWCC	2 cut(s)	604, 1380
Eco57I	CTGAAG	2 cut(s)	975, 987
Eco88I	CYCGRG	4 cut(s)	71, 916, 1183, 1215
EcoNI	CCTNNNNNAGG	1 cut(s)	71
EcoRI	GAATTC	2 cut(s)	590, 1291
EcoRII	CCWGG	3 cut(s)	99, 697, 1013
EcoT14I	CCWWGG	2 cut(s)	164, 1153
EcoT38I	GRGCYC	1 cut(s)	1190
ErhI	CCWWGG	2 cut(s)	164, 1153
FaeI	CATG	5 cut(s)	238, 395, 745, 776, 872
FalI	AAGNNNNNCTT	2 cut(s)	276, 308
FaqI	GGGAC	1 cut(s)	318
FatI	CATG	5 cut(s)	234, 391, 741, 772, 868
FauI	CCCGC	1 cut(s)	894
FauNDI	CATATG	1 cut(s)	95
FbaI	TGATCA	1 cut(s)	1069
Fnu4HI	GCNGC	4 cut(s)	91, 399, 570, 1272
FokI	GGATG	8 cut(s)	300, 525, 791, 1115, 1135, 1139, 1170, 1292
FriOI	GRGCYC	1 cut(s)	1190
Fsp4HI	GCNGC	4 cut(s)	91, 399, 570, 1272
FspBI	CTAG	3 cut(s)	62, 459, 584
GluI	GCNGC	4 cut(s)	91, 399, 570, 1272
GsaI	CCCAGC	2 cut(s)	758, 1247
HaeIII	GGCC	1 cut(s)	66
Hin1II	CATG	5 cut(s)	238, 395, 745, 776, 872
HindIII	AAGCTT	1 cut(s)	527
HinfI	GANTC	7 cut(s)	143, 188, 238, 543, 621, 875, 921
Hpy166II	GTNNAC	1 cut(s)	1080
Hpy188I	TCNGA	6 cut(s)	22, 379, 717, 1045, 1261, 1290
Hpy188III	TCNNGA	6 cut(s)	32, 425, 730, 773, 869, 1094
Hpy8I	GTNNAC	1 cut(s)	1080
Hpy99I	CGWCG	1 cut(s)	1365
HpyAV	CCTTC	6 cut(s)	3, 278, 346, 368, 1219, 1241
HpyCH4III	ACNGT	4 cut(s)	436, 536, 1026, 1413
HpyCH4IV	ACGT	2 cut(s)	48, 58
HpyCH4V	TGCA	7 cut(s)	270, 275, 398, 432, 960, 1271, 1305
HpyF10VI	GCNNNNNNNGC	3 cut(s)	96, 459, 504
HpyF3I	CTNAG	3 cut(s)	376, 1044, 1058
HpySE526I	ACGT	2 cut(s)	48, 58
Hsp92II	CATG	5 cut(s)	238, 395, 745, 776, 872
KpnI	GGTACC	1 cut(s)	825
Ksp22I	TGATCA	1 cut(s)	1069
KspI	CCGCGG	1 cut(s)	890
Kzo9I	GATC	7 cut(s)	22, 253, 314, 516, 766, 909, 1069
LmnI	GCTCC	5 cut(s)	478, 1106, 1130, 1345, 1367
Lsp1109I	GCAGC	4 cut(s)	102, 410, 556, 1283
LweI	GCATC	2 cut(s)	284, 1314
MaeI	CTAG	3 cut(s)	62, 459, 584
MaeII	ACGT	2 cut(s)	48, 58
MaeIII	GTNAC	4 cut(s)	208, 224, 634, 1400
MalI	GATC	7 cut(s)	24, 255, 316, 518, 768, 911, 1071
MboI	GATC	7 cut(s)	22, 253, 314, 516, 766, 909, 1069
MflI	RGATCY	3 cut(s)	516, 766, 909
MhlI	GDGCHC	1 cut(s)	1190
MlyI	GAGTC	2 cut(s)	615, 884
MmeI	TCCRAC	3 cut(s)	456, 544, 1284
MseI	TTAA	2 cut(s)	303, 483
MslI	CAYNNNNRTG	2 cut(s)	233, 777
MspA1I	CMGCKG	1 cut(s)	889
MspR9I	CCNGG	3 cut(s)	101, 699, 1015
MvaI	CCWGG	3 cut(s)	101, 699, 1015
MvnI	CGCG	3 cut(s)	498, 541, 889
MwoI	GCNNNNNNNGC	3 cut(s)	96, 459, 504
NdeI	CATATG	1 cut(s)	95
NdeII	GATC	7 cut(s)	22, 253, 314, 516, 766, 909, 1069
NlaIII	CATG	5 cut(s)	238, 395, 745, 776, 872
NlaIV	GGNNCC	4 cut(s)	86, 518, 823, 1369
PaeR7I	CTCGAG	1 cut(s)	71
PagI	TCATGA	2 cut(s)	772, 868
PceI	AGGCCT	1 cut(s)	66
PfeI	GAWTC	5 cut(s)	143, 188, 238, 543, 921
PflMI	CCANNNNNTGG	1 cut(s)	1377
PkrI	GCNGC	4 cut(s)	92, 400, 571, 1273
PleI	GAGTC	2 cut(s)	615, 883
PpsI	GAGTC	2 cut(s)	615, 883
Psp6I	CCWGG	3 cut(s)	99, 697, 1013
PspFI	CCCAGC	2 cut(s)	754, 1243
PspGI	CCWGG	3 cut(s)	99, 697, 1013
PspN4I	GGNNCC	4 cut(s)	86, 518, 823, 1369
PspPI	GGNCC	2 cut(s)	604, 1380
PspXI	VCTCGAGB	1 cut(s)	71
PstNI	CAGNNNCTG	1 cut(s)	1057
PsuI	RGATCY	3 cut(s)	516, 766, 909
RsaI	GTAC	3 cut(s)	823, 1079, 1327
RsaNI	GTAC	3 cut(s)	822, 1078, 1326
RseI	CAYNNNNRTG	2 cut(s)	233, 777
SacII	CCGCGG	1 cut(s)	890
SaqAI	TTAA	2 cut(s)	303, 483
SatI	GCNGC	4 cut(s)	91, 399, 570, 1272
Sau3AI	GATC	7 cut(s)	22, 253, 314, 516, 766, 909, 1069
Sau96I	GGNCC	2 cut(s)	604, 1380
SchI	GAGTC	2 cut(s)	615, 884
ScrFI	CCNGG	3 cut(s)	101, 699, 1015
SduI	GDGCHC	1 cut(s)	1190
SfaNI	GCATC	2 cut(s)	284, 1314
SfcI	CTRYAG	1 cut(s)	1412
Sfr274I	CTCGAG	1 cut(s)	71
Sfr303I	CCGCGG	1 cut(s)	890
SgrBI	CCGCGG	1 cut(s)	890
SinI	GGWCC	2 cut(s)	604, 1380
SlaI	CTCGAG	1 cut(s)	71
SmiMI	CAYNNNNRTG	2 cut(s)	233, 777
SmlI	CTYRAG	2 cut(s)	71, 623
SmoI	CTYRAG	2 cut(s)	71, 623
SseBI	AGGCCT	1 cut(s)	66
SsiI	CCGC	9 cut(s)	88, 245, 312, 451, 498, 539, 798, 887, 889
SspI	AATATT	1 cut(s)	725
SspMI	CTAG	3 cut(s)	62, 459, 584
StuI	AGGCCT	1 cut(s)	66
StyD4I	CCNGG	3 cut(s)	99, 697, 1013
StyI	CCWWGG	2 cut(s)	164, 1153
TaaI	ACNGT	4 cut(s)	436, 536, 1026, 1413
TaiI	ACGT	2 cut(s)	51, 61
TaqI	TCGA	1 cut(s)	72
TatI	WGTACW	1 cut(s)	1077
TfiI	GAWTC	5 cut(s)	143, 188, 238, 543, 921
Tru1I	TTAA	2 cut(s)	303, 483
Tru9I	TTAA	2 cut(s)	303, 483
TscAI	CASTG	1 cut(s)	391
TseI	GCWGC	4 cut(s)	90, 398, 569, 1271
TspRI	CASTG	1 cut(s)	391
Van91I	CCANNNNNTGG	1 cut(s)	1377
VpaK11BI	GGWCC	2 cut(s)	604, 1380
XagI	CCTNNNNNAGG	1 cut(s)	71
XapI	RAATTY	6 cut(s)	590, 651, 703, 893, 1291, 1351
XhoI	CTCGAG	1 cut(s)	71
XspI	CTAG	3 cut(s)	62, 459, 584

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.