Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001757

Physical Location & Seq

Genomic Coordinates Forward (+)

55373472 .. 55374428

Gene Structure 957 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ26250

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGAGGCGAAGGCAATGGTCTGATCTTCCTCCTGAACTTATCACAGACATAGCAGAACGTCTAGGCCTACTCGAGGTTGTGAGGTTCCGCAGCATATGCCAGGCTTGGAACTCTGCTTCTTCTACAATTTCAGCTAAAATTGAATCTTTACTAAACTATAAACCTTGGTTTCTACATTATGGGTATGATTCTGCCCAATGTCAGTTGGTAACTACTGAGAGTGGTAACATTACCATGAATCTTCCGCAACTGGATCAAACTACAACTTGCATTGCATCGTATGAAGGATGGCTTCTTGTATTTAAACAAGGCGGATCAATGTTCTTCTTTCGTCCCTTCTCAAAAACAAAGATAGACCTTCCCAATTTCCCAGTCTCAGAACTCACTGACCATGTTGCAGCATTTTCATCTCCTCCCACATCTCCTGACTGCACAGTTTGTGTCATCAACCGCAGTACTAGCAATGACAATGAGTTGGAGCTTAATCTACTTTGTCGTGGAGGAGGCAATGGATGGATCCAACACAAGCTTGACTGTCCGCGATTCTCCATTGATACAATCAAATGTGCTGCTTATAGCAAACTAGGAGAATTCTCCTTTTTGGACCATGGTGATAACAAACTCAAGTTATCAGTTACACACAACAGAGAAATTTGCTGGAAGAATAATAAAGTAGTTGAGGCGAAAGATGACTTACCAGGAAATTTTTATTATCAGATGGAATATTTCAAGAAAACAGACATGATGAACAAGCTGGGGTTAGCAGCTCTTCATGAGGATGTTTCGTTTTCTGTTTGCGGAACACAGACAGAGTATAATGGTACCGACTATTTTATATATAATGAGATTTATAGTATCAGTAATCATCATGAAGAGTCCAATAGCCCGCGGAAATTCAAAGGTGTATGGATCTACCCGAGATTCTATCAAATCTCTCCAAGAGAGCAGAGTTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

318

Amino Acids

36.56

Weight (kDa)

6.08

Isoelectric Point (pI)

44.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	6 - 41	2.8e-06	F-box domain
Beta-prop_KIB1-4	PF03478	78 - 185	4.2e-13	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001757)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24380 FvH4_2g24390 FvH4_2g24391 FvH4_2g24410 FvH4_2g24671 FvH4_2g24690 FvH4_2g24690 FvH4_2g24690 FvH4_2g24700
malus_domestica	MD11G1297700.v1.1
prunus_persica	Prupe.4G274600_v2.0.a1 Prupe.8G252000_v2.0.a1
pyrus_communis	pycom06g03770
rosa_chinensis	RchiOBHm_Chr6g0292521 RchiOBHm_Chr6g0292531
rosa_laevigata	RLG00000012013 RLG00000012014 RLG00000012015 RLG00000012016 RLG00000012017 RLG00000012049
rosa_multiflora	Rmu_sc0001354.1_g000031 Rmu_sc0001354.1_g000032 Rmu_sc0003908.1_g000003
rosa_roxburghii	Rroxscaffold_7G00174980 Rroxscaffold_7G00175290
rosa_rugosa	Rorug06G0224900 Rorug06G0227400 Rorug06G0227500
rosa_samantha	Rh4AG099200 Rh4CG108900 Rh4CG412100 Rh4DG094200 Rh6AG338000 Rh6AG340600 Rh6AG340700 Rh6BG345300 Rh6BG348000 Rh6BG348100 Rh6BG348200 Rh6CG352300 Rh6CG354900 Rh6CG355000 Rh6DG338300 Rh6DG340700 Rh6DG340800
rosa_wichuraiana	Rw6G029670 Rw6G029680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	821
AccB1I	GGYRCC	1 cut(s)	821
AccII	CGCG	2 cut(s)	541, 889
AciI	CCGC	8 cut(s)	88, 245, 312, 451, 539, 798, 887, 889
AclWI	GGATC	5 cut(s)	261, 322, 511, 524, 917
AcsI	RAATTY	4 cut(s)	590, 651, 703, 893
AfaI	GTAC	2 cut(s)	457, 823
AfiI	CCNNNNNNNGG	1 cut(s)	73
AgsI	TTSAA	3 cut(s)	143, 730, 898
AjnI	CCWGG	2 cut(s)	99, 697
AluBI	AGCT	5 cut(s)	134, 481, 529, 754, 767
AluI	AGCT	5 cut(s)	134, 481, 529, 754, 767
Alw26I	GTCTC	1 cut(s)	379
AlwI	GGATC	5 cut(s)	261, 322, 511, 524, 917
Ama87I	CYCGRG	2 cut(s)	71, 916
AoxI	GGCC	1 cut(s)	64
ApeKI	GCWGC	4 cut(s)	90, 398, 569, 764
ApoI	RAATTY	4 cut(s)	590, 651, 703, 893
Asp718I	GGTACC	1 cut(s)	821
AspS9I	GGNCC	1 cut(s)	604
AsuHPI	GGTGA	1 cut(s)	623
AvaI	CYCGRG	2 cut(s)	71, 916
AvaII	GGWCC	1 cut(s)	604
BamHI	GGATCC	1 cut(s)	516
BanI	GGYRCC	1 cut(s)	821
BbvI	GCAGC	4 cut(s)	102, 410, 556, 776
BccI	CCATC	3 cut(s)	282, 507, 712
BciT130I	CCWGG	2 cut(s)	101, 699
BcoDI	GTCTC	1 cut(s)	379
BfaI	CTAG	3 cut(s)	62, 459, 584
BisI	GCNGC	4 cut(s)	91, 399, 570, 765
BlsI	GCNGC	4 cut(s)	92, 400, 571, 766
BmcAI	AGTACT	1 cut(s)	457
Bme1390I	CCNGG	2 cut(s)	101, 699
Bme18I	GGWCC	1 cut(s)	604
BmeT110I	CYCGRG	2 cut(s)	71, 916
BmgT120I	GGNCC	1 cut(s)	604
BmiI	GGNNCC	3 cut(s)	86, 518, 823
BmrFI	CCNGG	2 cut(s)	101, 699
BmrI	ACTGGG	1 cut(s)	365
BmsI	GCATC	1 cut(s)	284
BmuI	ACTGGG	1 cut(s)	365
BpuEI	CTTGAG	1 cut(s)	608
BsaJI	CCNNGG	3 cut(s)	164, 607, 887
Bsc4I	CCNNNNNNNGG	1 cut(s)	73
Bse1I	ACTGG	2 cut(s)	255, 371
Bse3DI	GCAATG	4 cut(s)	20, 270, 469, 514
BseBI	CCWGG	2 cut(s)	101, 699
BseDI	CCNNGG	3 cut(s)	164, 607, 887
BseGI	GGATG	3 cut(s)	293, 518, 784
BseLI	CCNNNNNNNGG	1 cut(s)	73
BseMI	GCAATG	4 cut(s)	20, 270, 469, 514
BseMII	CTCAG	2 cut(s)	207, 390
BseNI	ACTGG	2 cut(s)	255, 371
BseRI	GAGGAG	2 cut(s)	402, 516
BseXI	GCAGC	4 cut(s)	102, 410, 556, 776
BseYI	CCCAGC	1 cut(s)	754
BsgI	GTGCAG	1 cut(s)	415
Bsh1236I	CGCG	2 cut(s)	541, 889
BshFI	GGCC	1 cut(s)	66
BshNI	GGYRCC	1 cut(s)	821
BsiHKCI	CYCGRG	2 cut(s)	71, 916
BslFI	GGGAC	1 cut(s)	318
BslI	CCNNNNNNNGG	1 cut(s)	73
BsmAI	GTCTC	1 cut(s)	379
BsmFI	GGGAC	1 cut(s)	318
BsnI	GGCC	1 cut(s)	66
BsoBI	CYCGRG	2 cut(s)	71, 916
Bsp143I	GATC	5 cut(s)	22, 253, 314, 516, 909
Bsp19I	CCATGG	1 cut(s)	607
BspACI	CCGC	8 cut(s)	88, 245, 312, 451, 539, 798, 887, 889
BspANI	GGCC	1 cut(s)	66
BspCNI	CTCAG	2 cut(s)	208, 389
BspFNI	CGCG	2 cut(s)	541, 889
BspHI	TCATGA	2 cut(s)	772, 868
BspLI	GGNNCC	3 cut(s)	86, 518, 823
BspPI	GGATC	5 cut(s)	261, 322, 511, 524, 917
BspQI	GCTCTTC	1 cut(s)	774
BspT107I	GGYRCC	1 cut(s)	821
BsrDI	GCAATG	4 cut(s)	20, 270, 469, 514
BsrI	ACTGG	2 cut(s)	255, 371
BssECI	CCNNGG	3 cut(s)	164, 607, 887
BssMI	GATC	5 cut(s)	22, 253, 314, 516, 909
BssT1I	CCWWGG	2 cut(s)	164, 607
Bst2UI	CCWGG	2 cut(s)	101, 699
Bst4CI	ACNGT	2 cut(s)	436, 536
Bst6I	CTCTTC	2 cut(s)	774, 867
BstAPI	GCANNNNNTGC	1 cut(s)	96
BstC8I	GCNNGC	1 cut(s)	887
BstDEI	CTNAG	2 cut(s)	216, 376
BstDSI	CCRYGG	2 cut(s)	607, 887
BstENI	CCTNNNNNAGG	1 cut(s)	71
BstF5I	GGATG	3 cut(s)	293, 518, 784
BstFNI	CGCG	2 cut(s)	541, 889
BstKTI	GATC	5 cut(s)	25, 256, 317, 519, 912
BstMAI	GTCTC	1 cut(s)	379
BstMBI	GATC	5 cut(s)	22, 253, 314, 516, 909
BstMWI	GCNNNNNNNGC	2 cut(s)	96, 459
BstNI	CCWGG	2 cut(s)	101, 699
BstSCI	CCNGG	2 cut(s)	99, 697
BstUI	CGCG	2 cut(s)	541, 889
BstV1I	GCAGC	4 cut(s)	102, 410, 556, 776
BstX2I	RGATCY	2 cut(s)	516, 909
BstYI	RGATCY	2 cut(s)	516, 909
BsuRI	GGCC	1 cut(s)	66
BtgI	CCRYGG	2 cut(s)	607, 887
BtsCI	GGATG	3 cut(s)	293, 518, 784
BtsIMutI	CAGTG	1 cut(s)	384
Cac8I	GCNNGC	1 cut(s)	887
CciI	TCATGA	2 cut(s)	772, 868
Cfr13I	GGNCC	1 cut(s)	604
Cfr42I	CCGCGG	1 cut(s)	890
Csp6I	GTAC	2 cut(s)	456, 822
CviAII	CATG	6 cut(s)	235, 392, 608, 742, 773, 869
CviJI	RGCY	9 cut(s)	66, 104, 134, 292, 481, 529, 754, 767, 885
CviKI_1	RGCY	9 cut(s)	66, 104, 134, 292, 481, 529, 754, 767, 885
CviQI	GTAC	2 cut(s)	456, 822
DdeI	CTNAG	2 cut(s)	216, 376
DpnI	GATC	5 cut(s)	24, 255, 316, 518, 911
DpnII	GATC	5 cut(s)	22, 253, 314, 516, 909
DraI	TTTAAA	1 cut(s)	304
Eam1104I	CTCTTC	2 cut(s)	774, 867
EarI	CTCTTC	2 cut(s)	774, 867
EciI	GGCGGA	1 cut(s)	327
Eco130I	CCWWGG	2 cut(s)	164, 607
Eco147I	AGGCCT	1 cut(s)	66
Eco47I	GGWCC	1 cut(s)	604
Eco88I	CYCGRG	2 cut(s)	71, 916
EcoNI	CCTNNNNNAGG	1 cut(s)	71
EcoRI	GAATTC	1 cut(s)	590
EcoRII	CCWGG	2 cut(s)	99, 697
EcoT14I	CCWWGG	2 cut(s)	164, 607
ErhI	CCWWGG	2 cut(s)	164, 607
FaeI	CATG	6 cut(s)	238, 395, 611, 745, 776, 872
FalI	AAGNNNNNCTT	2 cut(s)	276, 308
FaqI	GGGAC	1 cut(s)	318
FatI	CATG	6 cut(s)	234, 391, 607, 741, 772, 868
FauI	CCCGC	1 cut(s)	894
FauNDI	CATATG	1 cut(s)	95
Fnu4HI	GCNGC	4 cut(s)	91, 399, 570, 765
FokI	GGATG	3 cut(s)	300, 525, 791
Fsp4HI	GCNGC	4 cut(s)	91, 399, 570, 765
FspBI	CTAG	3 cut(s)	62, 459, 584
GluI	GCNGC	4 cut(s)	91, 399, 570, 765
GsaI	CCCAGC	1 cut(s)	758
HaeIII	GGCC	1 cut(s)	66
Hin1II	CATG	6 cut(s)	238, 395, 611, 745, 776, 872
HindIII	AAGCTT	1 cut(s)	527
HinfI	GANTC	6 cut(s)	143, 188, 238, 543, 875, 921
HphI	GGTGA	1 cut(s)	623
Hpy188I	TCNGA	3 cut(s)	22, 379, 717
Hpy188III	TCNNGA	5 cut(s)	32, 425, 730, 773, 869
HpyAV	CCTTC	4 cut(s)	3, 278, 346, 368
HpyCH4III	ACNGT	2 cut(s)	436, 536
HpyCH4IV	ACGT	1 cut(s)	58
HpyCH4V	TGCA	4 cut(s)	270, 275, 398, 432
HpyF10VI	GCNNNNNNNGC	2 cut(s)	96, 459
HpyF3I	CTNAG	2 cut(s)	216, 376
HpySE526I	ACGT	1 cut(s)	58
Hsp92II	CATG	6 cut(s)	238, 395, 611, 745, 776, 872
KpnI	GGTACC	1 cut(s)	825
KspI	CCGCGG	1 cut(s)	890
Kzo9I	GATC	5 cut(s)	22, 253, 314, 516, 909
LguI	GCTCTTC	1 cut(s)	774
LmnI	GCTCC	1 cut(s)	478
Lsp1109I	GCAGC	4 cut(s)	102, 410, 556, 776
LweI	GCATC	1 cut(s)	284
MaeI	CTAG	3 cut(s)	62, 459, 584
MaeII	ACGT	1 cut(s)	58
MaeIII	GTNAC	3 cut(s)	208, 224, 634
MalI	GATC	5 cut(s)	24, 255, 316, 518, 911
MboI	GATC	5 cut(s)	22, 253, 314, 516, 909
MboII	GAAGA	7 cut(s)	17, 111, 233, 316, 673, 761, 884
MflI	RGATCY	2 cut(s)	516, 909
MluCI	AATT	7 cut(s)	126, 138, 364, 590, 651, 703, 893
MlyI	GAGTC	1 cut(s)	884
MmeI	TCCRAC	2 cut(s)	456, 544
MnlI	CCTC	8 cut(s)	39, 67, 75, 423, 494, 497, 673, 769
MseI	TTAA	2 cut(s)	303, 483
MslI	CAYNNNNRTG	2 cut(s)	233, 777
MspA1I	CMGCKG	1 cut(s)	889
MspR9I	CCNGG	2 cut(s)	101, 699
MvaI	CCWGG	2 cut(s)	101, 699
MvnI	CGCG	2 cut(s)	541, 889
MwoI	GCNNNNNNNGC	2 cut(s)	96, 459
NcoI	CCATGG	1 cut(s)	607
NdeI	CATATG	1 cut(s)	95
NdeII	GATC	5 cut(s)	22, 253, 314, 516, 909
NlaIII	CATG	6 cut(s)	238, 395, 611, 745, 776, 872
NlaIV	GGNNCC	3 cut(s)	86, 518, 823
PaeR7I	CTCGAG	1 cut(s)	71
PagI	TCATGA	2 cut(s)	772, 868
PceI	AGGCCT	1 cut(s)	66
PciSI	GCTCTTC	1 cut(s)	774
PfeI	GAWTC	5 cut(s)	143, 188, 238, 543, 921
PkrI	GCNGC	4 cut(s)	92, 400, 571, 766
PleI	GAGTC	1 cut(s)	883
PpsI	GAGTC	1 cut(s)	883
Psp6I	CCWGG	2 cut(s)	99, 697
PspFI	CCCAGC	1 cut(s)	754
PspGI	CCWGG	2 cut(s)	99, 697
PspN4I	GGNNCC	3 cut(s)	86, 518, 823
PspPI	GGNCC	1 cut(s)	604
PspXI	VCTCGAGB	1 cut(s)	71
PsuI	RGATCY	2 cut(s)	516, 909
RsaI	GTAC	2 cut(s)	457, 823
RsaNI	GTAC	2 cut(s)	456, 822
RseI	CAYNNNNRTG	2 cut(s)	233, 777
SacII	CCGCGG	1 cut(s)	890
SapI	GCTCTTC	1 cut(s)	774
SaqAI	TTAA	2 cut(s)	303, 483
SatI	GCNGC	4 cut(s)	91, 399, 570, 765
Sau3AI	GATC	5 cut(s)	22, 253, 314, 516, 909
Sau96I	GGNCC	1 cut(s)	604
ScaI	AGTACT	1 cut(s)	457
SchI	GAGTC	1 cut(s)	884
ScrFI	CCNGG	2 cut(s)	101, 699
SfaNI	GCATC	1 cut(s)	284
Sfr274I	CTCGAG	1 cut(s)	71
Sfr303I	CCGCGG	1 cut(s)	890
SgrBI	CCGCGG	1 cut(s)	890
SinI	GGWCC	1 cut(s)	604
SlaI	CTCGAG	1 cut(s)	71
SmiMI	CAYNNNNRTG	2 cut(s)	233, 777
SmlI	CTYRAG	2 cut(s)	71, 623
SmoI	CTYRAG	2 cut(s)	71, 623
Sse9I	AATT	7 cut(s)	126, 138, 364, 590, 651, 703, 893
SseBI	AGGCCT	1 cut(s)	66
SsiI	CCGC	8 cut(s)	88, 245, 312, 451, 539, 798, 887, 889
SspI	AATATT	1 cut(s)	725
SspMI	CTAG	3 cut(s)	62, 459, 584
StuI	AGGCCT	1 cut(s)	66
StyD4I	CCNGG	2 cut(s)	99, 697
StyI	CCWWGG	2 cut(s)	164, 607
TaaI	ACNGT	2 cut(s)	436, 536
TaiI	ACGT	1 cut(s)	61
TaqI	TCGA	1 cut(s)	72
TasI	AATT	7 cut(s)	126, 138, 364, 590, 651, 703, 893
TatI	WGTACW	1 cut(s)	455
TfiI	GAWTC	5 cut(s)	143, 188, 238, 543, 921
Tru1I	TTAA	2 cut(s)	303, 483
Tru9I	TTAA	2 cut(s)	303, 483
TscAI	CASTG	1 cut(s)	391
TseI	GCWGC	4 cut(s)	90, 398, 569, 764
TspDTI	ATGAA	6 cut(s)	251, 297, 396, 761, 761, 885
TspRI	CASTG	1 cut(s)	391
VpaK11BI	GGWCC	1 cut(s)	604
XagI	CCTNNNNNAGG	1 cut(s)	71
XapI	RAATTY	4 cut(s)	590, 651, 703, 893
XhoI	CTCGAG	1 cut(s)	71
XspI	CTAG	3 cut(s)	62, 459, 584
ZrmI	AGTACT	1 cut(s)	457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.