pycom06g03770

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0001757
Physical Location & Seq
Reverse (-)
4713491 .. 4713940
450 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g03770.1

Sequence Viewer

Length: 450 bp
ATGAGCCTTCCGGAATTGGATGGAGCGACTTGCCTTGCATCACACCAAGGATGGCTTCTTCTATTTAAAGAAGGTCAATGTGGTAGTAATTCATCAATGTTTGTCTTTCGTCCTTTCTCTAAAACAAAAATAGACCTTCCGGAATCCCCTATCACGAAAGTCTATGATCATGTTGTAGCGTTTTCATGTCATCGAATTTCCCAAGATTGCACTGTCTGTGTCACTGGTCGTATCAATGATGATGAACTCGAGGTGAATGTACTTCGTCGTGGAGCCAATATGTGGGTGCAATTCAACATTCGTAGTACTCGAGCCATGATAAGTACAATTGAATGTACTGCTTATAGGACTCACAAACAAAGATTCTACTTTTTAGACCGAAAAGATGGGTTACTCGTTGTACCTATTAGCAAAAGCACAGTAAGCCCCGGAGGTTTCTGGTTTTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

150

Amino Acids

16.96

Weight (kDa)

8.57

Isoelectric Point (pI)

62.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 2 - 139 1.1e-15 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 282
AccIII TCCGGA 2 cut(s) 10, 139
AcsI RAATTY 1 cut(s) 195
AfaI GTAC 5 cut(s) 261, 307, 325, 337, 402
AfiI CCNNNNNNNGG 1 cut(s) 282
AgsI TTSAA 2 cut(s) 295, 332
AjuI GAANNNNNNNTTGG 2 cut(s) 39, 71
Ama87I CYCGRG 2 cut(s) 248, 309
Aor13HI TCCGGA 2 cut(s) 10, 139
ApoI RAATTY 1 cut(s) 195
AsuC2I CCSGG 1 cut(s) 429
AsuHPI GGTGA 1 cut(s) 265
AvaI CYCGRG 2 cut(s) 248, 309
BccI CCATC 3 cut(s) 14, 45, 380
BclI TGATCA 1 cut(s) 166
BcnI CCSGG 1 cut(s) 429
BmcAI AGTACT 1 cut(s) 307
Bme1390I CCNGG 1 cut(s) 429
BmeT110I CYCGRG 2 cut(s) 248, 309
BmiI GGNNCC 1 cut(s) 274
BmrFI CCNGG 1 cut(s) 429
BmsI GCATC 1 cut(s) 47
BpuMI CCSGG 1 cut(s) 429
BsaJI CCNNGG 2 cut(s) 46, 427
BsaWI WCCGGW 2 cut(s) 10, 139
Bsc4I CCNNNNNNNGG 1 cut(s) 282
Bse1I ACTGG 1 cut(s) 229
BseAI TCCGGA 2 cut(s) 10, 139
BseDI CCNNGG 2 cut(s) 46, 427
BseGI GGATG 2 cut(s) 25, 56
BseLI CCNNNNNNNGG 1 cut(s) 282
BseNI ACTGG 1 cut(s) 229
BsiHKCI CYCGRG 2 cut(s) 248, 309
BsiSI CCGG 3 cut(s) 11, 140, 429
BslI CCNNNNNNNGG 1 cut(s) 282
BsoBI CYCGRG 2 cut(s) 248, 309
Bsp13I TCCGGA 2 cut(s) 10, 139
Bsp143I GATC 1 cut(s) 166
BspEI TCCGGA 2 cut(s) 10, 139
BspLI GGNNCC 1 cut(s) 274
BsrI ACTGG 1 cut(s) 229
BssECI CCNNGG 2 cut(s) 46, 427
BssMI GATC 1 cut(s) 166
BssT1I CCWWGG 1 cut(s) 46
Bst4CI ACNGT 2 cut(s) 214, 421
BstF5I GGATG 2 cut(s) 25, 56
BstKTI GATC 1 cut(s) 169
BstMBI GATC 1 cut(s) 166
BstMWI GCNNNNNNNGC 1 cut(s) 423
BstSCI CCNGG 1 cut(s) 427
BtsCI GGATG 2 cut(s) 25, 56
BtsIMutI CAGTG 2 cut(s) 210, 222
Csp6I GTAC 5 cut(s) 260, 306, 324, 336, 401
CviAII CATG 3 cut(s) 170, 186, 316
CviJI RGCY 5 cut(s) 6, 55, 275, 314, 426
CviKI_1 RGCY 5 cut(s) 6, 55, 275, 314, 426
CviQI GTAC 5 cut(s) 260, 306, 324, 336, 401
DpnI GATC 1 cut(s) 168
DpnII GATC 1 cut(s) 166
DraI TTTAAA 1 cut(s) 67
Eco130I CCWWGG 1 cut(s) 46
Eco88I CYCGRG 2 cut(s) 248, 309
EcoT14I CCWWGG 1 cut(s) 46
ErhI CCWWGG 1 cut(s) 46
FaeI CATG 3 cut(s) 173, 189, 319
FaiI YATR 6 cut(s) 165, 171, 187, 281, 317, 345
FalI AAGNNNNNCTT 2 cut(s) 39, 71
FatI CATG 3 cut(s) 169, 185, 315
FbaI TGATCA 1 cut(s) 166
FokI GGATG 2 cut(s) 32, 63
HapII CCGG 3 cut(s) 11, 140, 429
Hin1II CATG 3 cut(s) 173, 189, 319
HinfI GANTC 3 cut(s) 143, 349, 363
HpaII CCGG 3 cut(s) 11, 140, 429
HphI GGTGA 1 cut(s) 265
Hpy188III TCNNGA 3 cut(s) 11, 140, 154
Hpy99I CGWCG 1 cut(s) 270
HpyAV CCTTC 3 cut(s) 17, 65, 146
HpyCH4III ACNGT 2 cut(s) 214, 421
HpyCH4V TGCA 3 cut(s) 38, 210, 289
HpyF10VI GCNNNNNNNGC 1 cut(s) 423
Hsp92II CATG 3 cut(s) 173, 189, 319
Kpn2I TCCGGA 2 cut(s) 10, 139
Ksp22I TGATCA 1 cut(s) 166
Kzo9I GATC 1 cut(s) 166
LmnI GCTCC 2 cut(s) 23, 272
LpnPI CCDG 5 cut(s) 24, 153, 210, 424, 442
LweI GCATC 1 cut(s) 47
MaeIII GTNAC 2 cut(s) 220, 390
MalI GATC 1 cut(s) 168
MboI GATC 1 cut(s) 166
MboII GAAGA 1 cut(s) 50
MfeI CAATTG 1 cut(s) 327
MluCI AATT 5 cut(s) 14, 88, 195, 290, 327
MlyI GAGTC 1 cut(s) 343
MnlI CCTC 2 cut(s) 244, 425
MroI TCCGGA 2 cut(s) 10, 139
MseI TTAA 1 cut(s) 66
MspI CCGG 3 cut(s) 11, 140, 429
MspR9I CCNGG 1 cut(s) 429
MunI CAATTG 1 cut(s) 327
MwoI GCNNNNNNNGC 1 cut(s) 423
NciI CCSGG 1 cut(s) 429
NdeII GATC 1 cut(s) 166
NlaIII CATG 3 cut(s) 173, 189, 319
NlaIV GGNNCC 1 cut(s) 274
NmuCI GTSAC 1 cut(s) 220
PaeR7I CTCGAG 2 cut(s) 248, 309
PcsI WCGNNNNNNNCGW 1 cut(s) 307
PfeI GAWTC 2 cut(s) 143, 363
PflMI CCANNNNNTGG 1 cut(s) 282
PleI GAGTC 1 cut(s) 343
PpsI GAGTC 1 cut(s) 343
PspN4I GGNNCC 1 cut(s) 274
PspXI VCTCGAGB 2 cut(s) 248, 309
RsaI GTAC 5 cut(s) 261, 307, 325, 337, 402
RsaNI GTAC 5 cut(s) 260, 306, 324, 336, 401
SaqAI TTAA 1 cut(s) 66
Sau3AI GATC 1 cut(s) 166
ScaI AGTACT 1 cut(s) 307
SchI GAGTC 1 cut(s) 343
ScrFI CCNGG 1 cut(s) 429
SetI ASST 5 cut(s) 76, 138, 255, 406, 436
SfaNI GCATC 1 cut(s) 47
Sfr274I CTCGAG 2 cut(s) 248, 309
SlaI CTCGAG 2 cut(s) 248, 309
SmlI CTYRAG 2 cut(s) 248, 309
SmoI CTYRAG 2 cut(s) 248, 309
Sse9I AATT 5 cut(s) 14, 88, 195, 290, 327
StyD4I CCNGG 1 cut(s) 427
StyI CCWWGG 1 cut(s) 46
TaaI ACNGT 2 cut(s) 214, 421
TaqI TCGA 3 cut(s) 193, 249, 310
TaqII GACCGA 1 cut(s) 393
TasI AATT 5 cut(s) 14, 88, 195, 290, 327
TatI WGTACW 4 cut(s) 259, 305, 323, 335
TfiI GAWTC 2 cut(s) 143, 363
Tru1I TTAA 1 cut(s) 66
Tru9I TTAA 1 cut(s) 66
TscAI CASTG 2 cut(s) 217, 229
TseFI GTSAC 1 cut(s) 220
Tsp45I GTSAC 1 cut(s) 220
TspDTI ATGAA 3 cut(s) 81, 174, 258
TspRI CASTG 2 cut(s) 217, 229
Van91I CCANNNNNTGG 1 cut(s) 282
XapI RAATTY 1 cut(s) 195
XhoI CTCGAG 2 cut(s) 248, 309
ZrmI AGTACT 1 cut(s) 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.