Rh6BG348200

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0001757
Physical Location & Seq
Forward (+)
57863818 .. 57864734
917 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG348200.1

Sequence Viewer

Length: 834 bp
ATGACCGACCGGAGAAAAAAGTGTATGTCACAATGCGTGTGCAAATCTTGGAAGTCTGCTTCATCCACAGCTTCAGCTCAATCTTCAGCTAAACCCTGGTTTCTACTGTATGGGGAAAACAATTCTGAGTGCCAGTTGCTGAGTGAAAGTGATCATAAGTACACCATCAGTCTTCCAGAACTGGATGGAGCAACTTGTCTTGCTTCATCCCAAGGATGGTTGCTTGTATTCCAAGAAAGCTCTGGCTCATTGTTTTTGTTTTGCCCCTTCTCTCGTGCGAAAATAGACCTTCCCAACTTCCCAGCCTCACAACTCTCCGACCATATTGCAGCATTTTCATCTCCTCCGAATTCCCAAGATTGCATCCTTTGTGTCATTAGCCATACCAATAATGATGAATGGGAGCTGAATTTACTTCGTCGGGGAGCCAATGAATGGACCAAACATAATTATTCTGGTTACTCAAAACTGAAGACAATCAAAGGTGCTGCTTATCACAAAGAGGACGGAGAGTTCAACTTTTTCGATCCAGATGACAAGTCACTCACATTTTCTACTAAGAACCTACGCTGGCGCTATTTTAACATAATCTCTCCCGGAACAGCAGATATAGAAGAAGTACCATTTAAATATTTCATACATTATTCTCAGAGAGAGAACTTGAAGAATAAGCTCGAGTTGGCAGAGAATGTTTCACTTTCTACTTGTGGGACACAGATGACTGATGGCACACTTGTTTTCAGTGAGAGCGTTACTGCTGATGCTGCTGACAACCAATCCAAGAGACGTCAACTTAAAGGGGTTTGGATCCACCCCAGGTTCTACCAAGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

277

Amino Acids

31.41

Weight (kDa)

6.65

Isoelectric Point (pI)

53.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 51 - 181 5.8e-19 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 790
AccB7I CCANNNNNTGG 1 cut(s) 435
AclWI GGATC 3 cut(s) 521, 802, 815
AcsI RAATTY 2 cut(s) 349, 409
AcuI CTGAAG 3 cut(s) 57, 69, 491
AcyI GRCGYC 1 cut(s) 787
AfaI GTAC 2 cut(s) 161, 621
AfiI CCNNNNNNNGG 2 cut(s) 216, 435
AgsI TTSAA 2 cut(s) 517, 664
AjnI CCWGG 2 cut(s) 95, 815
AloI GAACNNNNNNTCC 2 cut(s) 497, 529
AluBI AGCT 6 cut(s) 71, 77, 89, 240, 406, 673
AluI AGCT 6 cut(s) 71, 77, 89, 240, 406, 673
Alw26I GTCTC 1 cut(s) 778
AlwI GGATC 3 cut(s) 521, 802, 815
AlwNI CAGNNNCTG 1 cut(s) 139
Ama87I CYCGRG 1 cut(s) 674
ApeKI GCWGC 3 cut(s) 329, 488, 764
ApoI RAATTY 2 cut(s) 349, 409
AspLEI GCGC 1 cut(s) 576
AspS9I GGNCC 1 cut(s) 438
AsuC2I CCSGG 1 cut(s) 597
AvaI CYCGRG 1 cut(s) 674
AvaII GGWCC 1 cut(s) 438
BamHI GGATCC 1 cut(s) 807
BauI CACGAG 1 cut(s) 273
BbsI GAAGAC 2 cut(s) 164, 479
BbvI GCAGC 3 cut(s) 341, 475, 751
BccI CCATC 4 cut(s) 173, 179, 210, 719
BcgI CGANNNNNNTGC 2 cut(s) 308, 342
BciT130I CCWGG 2 cut(s) 97, 817
BclI TGATCA 1 cut(s) 151
BcnI CCSGG 1 cut(s) 597
BcoDI GTCTC 1 cut(s) 778
BfoI RGCGCY 1 cut(s) 577
BisI GCNGC 3 cut(s) 330, 489, 765
BlsI GCNGC 3 cut(s) 331, 490, 766
Bme1390I CCNGG 3 cut(s) 97, 597, 817
Bme18I GGWCC 1 cut(s) 438
BmeT110I CYCGRG 1 cut(s) 674
BmgT120I GGNCC 1 cut(s) 438
BmiI GGNNCC 2 cut(s) 427, 809
BmrFI CCNGG 3 cut(s) 97, 597, 817
BmsI GCATC 2 cut(s) 372, 751
BpiI GAAGAC 2 cut(s) 164, 479
BpuMI CCSGG 1 cut(s) 597
BsaHI GRCGYC 1 cut(s) 787
BsaJI CCNNGG 3 cut(s) 95, 211, 815
BsaWI WCCGGW 1 cut(s) 9
Bsc4I CCNNNNNNNGG 2 cut(s) 216, 435
Bse1I ACTGG 2 cut(s) 133, 186
BseBI CCWGG 2 cut(s) 97, 817
BseDI CCNNGG 3 cut(s) 95, 211, 815
BseGI GGATG 5 cut(s) 62, 190, 206, 221, 363
BseLI CCNNNNNNNGG 2 cut(s) 216, 435
BseMII CTCAG 3 cut(s) 117, 131, 662
BseNI ACTGG 2 cut(s) 133, 186
BseRI GAGGAG 1 cut(s) 333
BseXI GCAGC 3 cut(s) 341, 475, 751
BseYI CCCAGC 1 cut(s) 301
Bsh1285I CGRYCG 1 cut(s) 10
BsiEI CGRYCG 1 cut(s) 10
BsiHKCI CYCGRG 1 cut(s) 674
BsiSI CCGG 2 cut(s) 10, 597
BslFI GGGAC 1 cut(s) 724
BslI CCNNNNNNNGG 2 cut(s) 216, 435
BsmAI GTCTC 1 cut(s) 778
BsmBI CGTCTC 1 cut(s) 778
BsmFI GGGAC 1 cut(s) 724
BsoBI CYCGRG 1 cut(s) 674
Bsp143I GATC 3 cut(s) 151, 526, 807
BspCNI CTCAG 3 cut(s) 118, 132, 661
BspLI GGNNCC 2 cut(s) 427, 809
BspPI GGATC 3 cut(s) 521, 802, 815
BsrI ACTGG 2 cut(s) 133, 186
BssECI CCNNGG 3 cut(s) 95, 211, 815
BssMI GATC 3 cut(s) 151, 526, 807
BssNI GRCGYC 1 cut(s) 787
BssSI CACGAG 1 cut(s) 273
BssT1I CCWWGG 1 cut(s) 211
Bst2BI CACGAG 1 cut(s) 273
Bst2UI CCWGG 2 cut(s) 97, 817
Bst4CI ACNGT 1 cut(s) 108
BstACI GRCGYC 1 cut(s) 787
BstC8I GCNNGC 1 cut(s) 572
BstDEI CTNAG 4 cut(s) 126, 140, 558, 648
BstF5I GGATG 5 cut(s) 62, 190, 206, 221, 363
BstH2I RGCGCY 1 cut(s) 577
BstHHI GCGC 1 cut(s) 576
BstKTI GATC 3 cut(s) 154, 529, 810
BstMAI GTCTC 1 cut(s) 778
BstMBI GATC 3 cut(s) 151, 526, 807
BstMCI CGRYCG 1 cut(s) 10
BstMWI GCNNNNNNNGC 1 cut(s) 764
BstNI CCWGG 2 cut(s) 97, 817
BstSCI CCNGG 3 cut(s) 95, 595, 815
BstV1I GCAGC 3 cut(s) 341, 475, 751
BstV2I GAAGAC 2 cut(s) 164, 479
BstX2I RGATCY 1 cut(s) 807
BstYI RGATCY 1 cut(s) 807
BtsCI GGATG 5 cut(s) 62, 190, 206, 221, 363
BtsIMutI CAGTG 1 cut(s) 748
Cac8I GCNNGC 1 cut(s) 572
CaiI CAGNNNCTG 1 cut(s) 139
CfoI GCGC 1 cut(s) 576
Cfr13I GGNCC 1 cut(s) 438
Csp6I GTAC 2 cut(s) 160, 620
CviQI GTAC 2 cut(s) 160, 620
DdeI CTNAG 4 cut(s) 126, 140, 558, 648
DpnI GATC 3 cut(s) 153, 528, 809
DpnII GATC 3 cut(s) 151, 526, 807
DraI TTTAAA 1 cut(s) 628
Eco130I CCWWGG 1 cut(s) 211
Eco47I GGWCC 1 cut(s) 438
Eco57I CTGAAG 3 cut(s) 57, 69, 491
Eco88I CYCGRG 1 cut(s) 674
EcoRI GAATTC 1 cut(s) 349
EcoRII CCWGG 2 cut(s) 95, 815
EcoT14I CCWWGG 1 cut(s) 211
ErhI CCWWGG 1 cut(s) 211
Esp3I CGTCTC 1 cut(s) 778
FaiI YATR 9 cut(s) 26, 111, 156, 324, 384, 447, 587, 611, 638
FaqI GGGAC 1 cut(s) 724
FbaI TGATCA 1 cut(s) 151
Fnu4HI GCNGC 3 cut(s) 330, 489, 765
FokI GGATG 5 cut(s) 49, 193, 197, 228, 350
Fsp4HI GCNGC 3 cut(s) 330, 489, 765
GlaI GCGC 1 cut(s) 575
GluI GCNGC 3 cut(s) 330, 489, 765
GsaI CCCAGC 1 cut(s) 305
HaeII RGCGCY 1 cut(s) 577
HapII CCGG 2 cut(s) 10, 597
HhaI GCGC 1 cut(s) 576
Hin1I GRCGYC 1 cut(s) 787
Hin6I GCGC 1 cut(s) 574
HinP1I GCGC 1 cut(s) 574
HincII GTYRAC 1 cut(s) 791
HindII GTYRAC 1 cut(s) 791
HpaII CCGG 2 cut(s) 10, 597
Hpy166II GTNNAC 2 cut(s) 162, 791
Hpy188I TCNGA 5 cut(s) 127, 319, 348, 651, 833
Hpy188III TCNNGA 2 cut(s) 176, 530
Hpy8I GTNNAC 2 cut(s) 162, 791
Hpy99I CGWCG 1 cut(s) 423
HpyAV CCTTC 2 cut(s) 277, 299
HpyCH4III ACNGT 1 cut(s) 108
HpyCH4IV ACGT 1 cut(s) 787
HpyCH4V TGCA 3 cut(s) 42, 329, 363
HpyF10VI GCNNNNNNNGC 1 cut(s) 764
HpyF3I CTNAG 4 cut(s) 126, 140, 558, 648
HpySE526I ACGT 1 cut(s) 787
Hsp92I GRCGYC 1 cut(s) 787
HspAI GCGC 1 cut(s) 574
Ksp22I TGATCA 1 cut(s) 151
Kzo9I GATC 3 cut(s) 151, 526, 807
LmnI GCTCC 3 cut(s) 188, 403, 425
Lsp1109I GCAGC 3 cut(s) 341, 475, 751
LweI GCATC 2 cut(s) 372, 751
MaeII ACGT 1 cut(s) 787
MaeIII GTNAC 4 cut(s) 27, 458, 540, 751
MalI GATC 3 cut(s) 153, 528, 809
MboI GATC 3 cut(s) 151, 526, 807
MboII GAAGA 5 cut(s) 75, 164, 484, 626, 676
MflI RGATCY 1 cut(s) 807
MluCI AATT 4 cut(s) 121, 349, 409, 448
MmeI TCCRAC 1 cut(s) 342
MnlI CCTC 3 cut(s) 316, 354, 496
MseI TTAA 3 cut(s) 582, 627, 795
MspI CCGG 2 cut(s) 10, 597
MspR9I CCNGG 3 cut(s) 97, 597, 817
MvaI CCWGG 2 cut(s) 97, 817
MwoI GCNNNNNNNGC 1 cut(s) 764
NciI CCSGG 1 cut(s) 597
NdeII GATC 3 cut(s) 151, 526, 807
NlaIV GGNNCC 2 cut(s) 427, 809
NmuCI GTSAC 2 cut(s) 27, 540
PaeR7I CTCGAG 1 cut(s) 674
PflMI CCANNNNNTGG 1 cut(s) 435
PfoI TCCNGGA 1 cut(s) 595
PkrI GCNGC 3 cut(s) 331, 490, 766
Psp6I CCWGG 2 cut(s) 95, 815
PspFI CCCAGC 1 cut(s) 301
PspGI CCWGG 2 cut(s) 95, 815
PspN4I GGNNCC 2 cut(s) 427, 809
PspPI GGNCC 1 cut(s) 438
PspXI VCTCGAGB 1 cut(s) 674
PstNI CAGNNNCTG 1 cut(s) 139
PsuI RGATCY 1 cut(s) 807
RsaI GTAC 2 cut(s) 161, 621
RsaNI GTAC 2 cut(s) 160, 620
SaqAI TTAA 3 cut(s) 582, 627, 795
SatI GCNGC 3 cut(s) 330, 489, 765
Sau3AI GATC 3 cut(s) 151, 526, 807
Sau96I GGNCC 1 cut(s) 438
ScrFI CCNGG 3 cut(s) 97, 597, 817
SfaNI GCATC 2 cut(s) 372, 751
Sfr274I CTCGAG 1 cut(s) 674
SinI GGWCC 1 cut(s) 438
SlaI CTCGAG 1 cut(s) 674
SmiI ATTTAAAT 1 cut(s) 628
SmlI CTYRAG 1 cut(s) 674
SmoI CTYRAG 1 cut(s) 674
Sse9I AATT 4 cut(s) 121, 349, 409, 448
SspI AATATT 1 cut(s) 632
StyD4I CCNGG 3 cut(s) 95, 595, 815
StyI CCWWGG 1 cut(s) 211
SwaI ATTTAAAT 1 cut(s) 628
TaaI ACNGT 1 cut(s) 108
TaiI ACGT 1 cut(s) 790
TaqI TCGA 2 cut(s) 525, 675
TaqII GACCGA 1 cut(s) 20
TasI AATT 4 cut(s) 121, 349, 409, 448
TatI WGTACW 1 cut(s) 159
Tru1I TTAA 3 cut(s) 582, 627, 795
Tru9I TTAA 3 cut(s) 582, 627, 795
TscAI CASTG 1 cut(s) 748
TseFI GTSAC 2 cut(s) 27, 540
TseI GCWGC 3 cut(s) 329, 488, 764
Tsp45I GTSAC 2 cut(s) 27, 540
TspDTI ATGAA 6 cut(s) 51, 195, 327, 411, 447, 625
TspGWI ACGGA 1 cut(s) 522
TspRI CASTG 1 cut(s) 748
Van91I CCANNNNNTGG 1 cut(s) 435
VpaK11BI GGWCC 1 cut(s) 438
XapI RAATTY 2 cut(s) 349, 409
XcmI CCANNNNNNNNNTGG 1 cut(s) 239
XhoI CTCGAG 1 cut(s) 674
ZraI GACGTC 1 cut(s) 788
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.