MD11G1297700.v1.1

F-box kelch-repeat protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
Physical Location & Seq
Forward (+)
41490143 .. 41491411
1269 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1297700.v1.1.491

Sequence Viewer

Length: 1269 bp
ATGTACTATTACAATAATTCGGGTTCAACGAAACTCTTGACATTCTTGAATTTTGATGATGTCTTTTATGTTTTACGTGTTTTTTTCTTGGTGAAATTAGGTATATGCTATGAATCATTAATCCAAAAACCAATTAATTACGAATACTTACAGATAAAGAATGTGCCTCGCTTTAATCTGTGTAATTCTTTTTCACATGCATGCTCCTTGTTGTGTTTGGTCTGTCTTTTGCCATGTTCCTTAATTGTAACATATGTAGTTGGGGCCCTTGACAGTAGCAGCCATATATATGCAATGAGCAACTGTGCCAAAAGGTACGAAGGCCAATGGTCCGATCTTCCCCCTGAACTTGTCTCGGACATAGCAGACCGTCTAGGCACCGACGAGCTTCAAAGTTTTCGCACTGTCTGCAAGGCTTGGAATTCAGCTTCTTACACAGCCGTAGCCAAAGTCGAACCTGCACCGGATATTAAACCCTGGTTTCTACTCTATGGGATCACGGACAATGAGCTTAACAAAGATTCTGATCTTCAAAGCCAGTTATTGGTAAAAAAAAGTGGTGAAAAGTACCCGATATGTCTTCCACAACTTGATGGAACGACAACTTGCCTTGCCTCGAACCAAGGATGGCTTCTTTTGTTCCAACCAGGAGGTTCAATGTTCTTTTTTCGCCCCTTCGTTCCAATGAAAATAGACCTCCCGAAATTCCCAGCCTCAGAGCTCTCTGATCATGTTGCTGCATTTTCGTCTCCCCCAACTTCCCAAGATTGCATGGTTTGCGTCATGAGCCGGAAGAGTGATGGAGAATTTGAGCTGAATGTGCTTCACCGTGGAGCCAATGAATGGACACAACACAAGTACGATCGTCCCATTGATACAATCAAATGCGCTGCTTATCGCAACGGAGAATTCTATTTTCTAGACAGTAAGAGTGGTTATATCACGTTTGCTAAAGACTTGAGCTGGAATCGTGATTATTTAGTTGAAGTTAGCAATGAAGTGACTGAATGCAGGCCATCGCCGGATTATTTTTATACTGAGGACAGTTATTTTCAGACGAAGGACATGAAGAAGAAGCTGGGGTTGGCAGATGATGCCTCGATATCTACGTGTGGGACACTAAAGCAGTATCATGGCCTTCCTCAGTTTGTTTTCAATGAGACTATTTCCAGTAATCGTGTTCAAGAACCCGAAAGCCGGCAATTCAAAGGGGTATGGATCTACCCGAAAATGTTCTATCAAACCTCTCTAAAAGATGAGATATGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

423

Amino Acids

48.32

Weight (kDa)

5.52

Isoelectric Point (pI)

45.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 110 - 143 6.8e-07 F-box domain
F-box-like PF12937 110 - 144 6.1e-06 F-box-like
Beta-prop_KIB1-4 PF03478 189 - 332 8.1e-16 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 466
AccB1I GGYRCC 1 cut(s) 377
AccB7I CCANNNNNTGG 2 cut(s) 544, 843
AclWI GGATC 2 cut(s) 503, 1226
AcsI RAATTY 5 cut(s) 49, 421, 704, 806, 908
AfaI GTAC 4 cut(s) 5, 317, 569, 860
AfiI CCNNNNNNNGG 3 cut(s) 544, 843, 1197
AflIII ACRYGT 2 cut(s) 76, 1109
AgsI TTSAA 9 cut(s) 27, 49, 392, 533, 657, 986, 1156, 1184, 1207
AjnI CCWGG 2 cut(s) 476, 646
AjuI GAANNNNNNNTTGG 4 cut(s) 615, 647, 1067, 1099
AluBI AGCT 7 cut(s) 388, 428, 511, 721, 814, 963, 1078
AluI AGCT 7 cut(s) 388, 428, 511, 721, 814, 963, 1078
Alw21I GWGCWC 1 cut(s) 723
Alw26I GTCTC 3 cut(s) 358, 753, 1154
AlwI GGATC 2 cut(s) 503, 1226
AoxI GGCC 4 cut(s) 264, 322, 1013, 1135
ApaI GGGCCC 1 cut(s) 268
ApeKI GCWGC 3 cut(s) 279, 737, 890
ApoI RAATTY 5 cut(s) 49, 421, 704, 806, 908
AseI ATTAAT 2 cut(s) 119, 135
Asp700I GAANNNNTTC 1 cut(s) 1232
AspLEI GCGC 1 cut(s) 890
AspS9I GGNCC 3 cut(s) 264, 265, 330
AsuHPI GGTGA 3 cut(s) 103, 572, 818
AvaII GGWCC 1 cut(s) 330
BaeGI GKGCMC 1 cut(s) 268
BanI GGYRCC 1 cut(s) 377
BanII GRGCYC 2 cut(s) 268, 723
BbsI GAAGAC 1 cut(s) 572
Bbv12I GWGCWC 1 cut(s) 723
BbvI GCAGC 3 cut(s) 291, 724, 877
BccI CCATC 4 cut(s) 587, 621, 794, 1024
BceAI ACGGC 1 cut(s) 425
BciT130I CCWGG 2 cut(s) 478, 648
BclI TGATCA 1 cut(s) 727
BcoDI GTCTC 3 cut(s) 358, 753, 1154
BfaI CTAG 2 cut(s) 374, 920
BfuAI ACCTGC 1 cut(s) 466
BisI GCNGC 3 cut(s) 280, 738, 891
BlsI GCNGC 3 cut(s) 281, 739, 892
Bme1390I CCNGG 2 cut(s) 478, 648
Bme18I GGWCC 1 cut(s) 330
BmgT120I GGNCC 3 cut(s) 264, 265, 330
BmiI GGNNCC 4 cut(s) 265, 266, 379, 835
BmrFI CCNGG 2 cut(s) 478, 648
BmsI GCATC 1 cut(s) 1084
BpiI GAAGAC 1 cut(s) 572
BpuEI CTTGAG 1 cut(s) 979
BsaAI YACGTR 2 cut(s) 77, 1110
BsaBI GATNNNNATC 1 cut(s) 525
BsaJI CCNNGG 3 cut(s) 476, 622, 829
BsaWI WCCGGW 1 cut(s) 463
Bsc4I CCNNNNNNNGG 3 cut(s) 544, 843, 1197
Bse118I RCCGGY 1 cut(s) 1197
Bse1I ACTGG 2 cut(s) 538, 1170
Bse3DI GCAATG 2 cut(s) 300, 1000
Bse8I GATNNNNATC 1 cut(s) 525
BseBI CCWGG 2 cut(s) 478, 648
BseDI CCNNGG 3 cut(s) 476, 622, 829
BseGI GGATG 1 cut(s) 632
BseJI GATNNNNATC 1 cut(s) 525
BseLI CCNNNNNNNGG 3 cut(s) 544, 843, 1197
BseMI GCAATG 2 cut(s) 300, 1000
BseMII CTCAG 3 cut(s) 729, 1029, 1157
BseNI ACTGG 2 cut(s) 538, 1170
BseSI GKGCMC 1 cut(s) 268
BseXI GCAGC 3 cut(s) 291, 724, 877
BseYI CCCAGC 2 cut(s) 709, 1078
BsgI GTGCAG 1 cut(s) 444
Bsh1285I CGRYCG 1 cut(s) 865
BshFI GGCC 4 cut(s) 266, 324, 1015, 1137
BshNI GGYRCC 1 cut(s) 377
BsiEI CGRYCG 1 cut(s) 865
BsiHKAI GWGCWC 1 cut(s) 723
BsiSI CCGG 4 cut(s) 464, 790, 1022, 1198
BslFI GGGAC 2 cut(s) 852, 1129
BslI CCNNNNNNNGG 3 cut(s) 544, 843, 1197
BsmAI GTCTC 3 cut(s) 358, 753, 1154
BsmBI CGTCTC 1 cut(s) 753
BsmFI GGGAC 2 cut(s) 852, 1129
BsmI GAATGC 1 cut(s) 1013
BsnI GGCC 4 cut(s) 266, 324, 1015, 1137
Bsp120I GGGCCC 1 cut(s) 264
Bsp1286I GDGCHC 2 cut(s) 268, 723
Bsp143I GATC 6 cut(s) 334, 495, 526, 727, 862, 1218
BspANI GGCC 4 cut(s) 266, 324, 1015, 1137
BspCNI CTCAG 3 cut(s) 728, 1030, 1156
BspHI TCATGA 1 cut(s) 783
BspLI GGNNCC 4 cut(s) 265, 266, 379, 835
BspMI ACCTGC 1 cut(s) 466
BspPI GGATC 2 cut(s) 503, 1226
BspT107I GGYRCC 1 cut(s) 377
BsrDI GCAATG 2 cut(s) 300, 1000
BsrFI RCCGGY 1 cut(s) 1197
BsrI ACTGG 2 cut(s) 538, 1170
BssAI RCCGGY 1 cut(s) 1197
BssECI CCNNGG 3 cut(s) 476, 622, 829
BssMI GATC 6 cut(s) 334, 495, 526, 727, 862, 1218
BssT1I CCWWGG 1 cut(s) 622
Bst2UI CCWGG 2 cut(s) 478, 648
Bst4CI ACNGT 7 cut(s) 275, 305, 371, 406, 830, 926, 1046
Bst6I CTCTTC 1 cut(s) 788
BstAPI GCANNNNNTGC 3 cut(s) 408, 777, 1094
BstBAI YACGTR 2 cut(s) 77, 1110
BstC8I GCNNGC 3 cut(s) 202, 1013, 1199
BstDEI CTNAG 3 cut(s) 715, 1038, 1143
BstDSI CCRYGG 1 cut(s) 829
BstF5I GGATG 1 cut(s) 632
BstHHI GCGC 1 cut(s) 890
BstKTI GATC 6 cut(s) 337, 498, 529, 730, 865, 1221
BstMAI GTCTC 3 cut(s) 358, 753, 1154
BstMBI GATC 6 cut(s) 334, 495, 526, 727, 862, 1218
BstMCI CGRYCG 1 cut(s) 865
BstMWI GCNNNNNNNGC 5 cut(s) 408, 777, 786, 820, 1094
BstNI CCWGG 2 cut(s) 478, 648
BstNSI RCATGY 2 cut(s) 200, 204
BstSCI CCNGG 2 cut(s) 476, 646
BstSLI GKGCMC 1 cut(s) 268
BstV1I GCAGC 3 cut(s) 291, 724, 877
BstV2I GAAGAC 1 cut(s) 572
BstX2I RGATCY 1 cut(s) 1218
BstYI RGATCY 1 cut(s) 1218
BsuRI GGCC 4 cut(s) 266, 324, 1015, 1137
BtgI CCRYGG 1 cut(s) 829
BtgZI GCGATG 1 cut(s) 1002
BtsCI GGATG 1 cut(s) 632
BtsIMutI CAGTG 1 cut(s) 402
BveI ACCTGC 1 cut(s) 466
Cac8I GCNNGC 3 cut(s) 202, 1013, 1199
CciI TCATGA 1 cut(s) 783
CfoI GCGC 1 cut(s) 890
Cfr10I RCCGGY 1 cut(s) 1197
Cfr13I GGNCC 3 cut(s) 264, 265, 330
CseI GACGC 1 cut(s) 769
Csp6I GTAC 4 cut(s) 4, 316, 568, 859
CviAII CATG 8 cut(s) 197, 201, 234, 731, 772, 784, 1066, 1133
CviQI GTAC 4 cut(s) 4, 316, 568, 859
DdeI CTNAG 3 cut(s) 715, 1038, 1143
DpnI GATC 6 cut(s) 336, 497, 528, 729, 864, 1220
DpnII GATC 6 cut(s) 334, 495, 526, 727, 862, 1218
Eam1104I CTCTTC 1 cut(s) 788
EarI CTCTTC 1 cut(s) 788
Ecl136II GAGCTC 1 cut(s) 721
Eco130I CCWWGG 1 cut(s) 622
Eco24I GRGCYC 2 cut(s) 268, 723
Eco32I GATATC 1 cut(s) 1104
Eco47I GGWCC 1 cut(s) 330
Eco53kI GAGCTC 1 cut(s) 721
EcoICRI GAGCTC 1 cut(s) 721
EcoO109I RGGNCCY 2 cut(s) 264, 265
EcoRI GAATTC 2 cut(s) 421, 908
EcoRII CCWGG 2 cut(s) 476, 646
EcoRV GATATC 1 cut(s) 1104
EcoT14I CCWWGG 1 cut(s) 622
EcoT22I ATGCAT 1 cut(s) 202
EcoT38I GRGCYC 2 cut(s) 268, 723
ErhI CCWWGG 1 cut(s) 622
Esp3I CGTCTC 1 cut(s) 753
FaeI CATG 8 cut(s) 200, 204, 237, 734, 775, 787, 1069, 1136
FalI AAGNNNNNCTT 2 cut(s) 615, 647
FaqI GGGAC 2 cut(s) 852, 1129
FatI CATG 8 cut(s) 196, 200, 233, 730, 771, 783, 1065, 1132
FauNDI CATATG 1 cut(s) 253
FbaI TGATCA 1 cut(s) 727
Fnu4HI GCNGC 3 cut(s) 280, 738, 891
FokI GGATG 1 cut(s) 639
FriOI GRGCYC 2 cut(s) 268, 723
Fsp4HI GCNGC 3 cut(s) 280, 738, 891
FspBI CTAG 2 cut(s) 374, 920
GlaI GCGC 1 cut(s) 889
GluI GCNGC 3 cut(s) 280, 738, 891
GsaI CCCAGC 2 cut(s) 713, 1082
HaeIII GGCC 4 cut(s) 266, 324, 1015, 1137
HapII CCGG 4 cut(s) 464, 790, 1022, 1198
HgaI GACGC 1 cut(s) 769
HhaI GCGC 1 cut(s) 890
Hin1II CATG 8 cut(s) 200, 204, 237, 734, 775, 787, 1069, 1136
Hin6I GCGC 1 cut(s) 888
HinP1I GCGC 1 cut(s) 888
HinfI GANTC 3 cut(s) 113, 521, 967
HpaII CCGG 4 cut(s) 464, 790, 1022, 1198
HphI GGTGA 3 cut(s) 103, 572, 818
Hpy188I TCNGA 6 cut(s) 334, 358, 526, 718, 727, 1056
Hpy188III TCNNGA 7 cut(s) 37, 46, 700, 784, 920, 971, 1184
Hpy99I CGWCG 1 cut(s) 386
HpyAV CCTTC 4 cut(s) 314, 685, 1054, 1148
HpyCH4III ACNGT 7 cut(s) 275, 305, 371, 406, 830, 926, 1046
HpyCH4IV ACGT 3 cut(s) 76, 944, 1109
HpyCH4V TGCA 7 cut(s) 200, 293, 411, 461, 740, 771, 1011
HpyF10VI GCNNNNNNNGC 5 cut(s) 408, 777, 786, 820, 1094
HpyF3I CTNAG 3 cut(s) 715, 1038, 1143
HpySE526I ACGT 3 cut(s) 76, 944, 1109
Hsp92II CATG 8 cut(s) 200, 204, 237, 734, 775, 787, 1069, 1136
HspAI GCGC 1 cut(s) 888
KroI GCCGGC 1 cut(s) 1197
KroNI GCCGGC 1 cut(s) 1199
Ksp22I TGATCA 1 cut(s) 727
Kzo9I GATC 6 cut(s) 334, 495, 526, 727, 862, 1218
LmnI GCTCC 2 cut(s) 209, 833
Lsp1109I GCAGC 3 cut(s) 291, 724, 877
LweI GCATC 1 cut(s) 1084
MaeI CTAG 2 cut(s) 374, 920
MaeII ACGT 3 cut(s) 76, 944, 1109
MaeIII GTNAC 2 cut(s) 247, 1000
MalI GATC 6 cut(s) 336, 497, 528, 729, 864, 1220
MboI GATC 6 cut(s) 334, 495, 526, 727, 862, 1218
MboII GAAGA 6 cut(s) 329, 521, 572, 805, 1081, 1084
MflI RGATCY 1 cut(s) 1218
MhlI GDGCHC 2 cut(s) 268, 723
MmeI TCCRAC 1 cut(s) 667
MnlI CCTC 9 cut(s) 177, 625, 644, 707, 724, 1033, 1108, 1152, 1255
Mph1103I ATGCAT 1 cut(s) 202
MroNI GCCGGC 1 cut(s) 1197
MroXI GAANNNNTTC 1 cut(s) 1232
MseI TTAA 6 cut(s) 119, 135, 174, 242, 471, 513
MslI CAYNNNNRTG 2 cut(s) 199, 288
MspI CCGG 4 cut(s) 464, 790, 1022, 1198
MspR9I CCNGG 2 cut(s) 478, 648
Mva1269I GAATGC 1 cut(s) 1013
MvaI CCWGG 2 cut(s) 478, 648
MwoI GCNNNNNNNGC 5 cut(s) 408, 777, 786, 820, 1094
NaeI GCCGGC 1 cut(s) 1199
NdeI CATATG 1 cut(s) 253
NdeII GATC 6 cut(s) 334, 495, 526, 727, 862, 1218
NgoMIV GCCGGC 1 cut(s) 1197
NlaIII CATG 8 cut(s) 200, 204, 237, 734, 775, 787, 1069, 1136
NlaIV GGNNCC 4 cut(s) 265, 266, 379, 835
NmuCI GTSAC 1 cut(s) 1000
NsiI ATGCAT 1 cut(s) 202
NspI RCATGY 2 cut(s) 200, 204
PaeI GCATGC 1 cut(s) 204
PagI TCATGA 1 cut(s) 783
PcsI WCGNNNNNNNCGW 2 cut(s) 26, 1106
PctI GAATGC 1 cut(s) 1013
PdiI GCCGGC 1 cut(s) 1199
PdmI GAANNNNTTC 1 cut(s) 1232
PfeI GAWTC 3 cut(s) 113, 521, 967
PflMI CCANNNNNTGG 2 cut(s) 544, 843
PkrI GCNGC 3 cut(s) 281, 739, 892
Ple19I CGATCG 1 cut(s) 865
Ppu21I YACGTR 2 cut(s) 77, 1110
PshBI ATTAAT 2 cut(s) 119, 135
Psp124BI GAGCTC 1 cut(s) 723
Psp6I CCWGG 2 cut(s) 476, 646
PspFI CCCAGC 2 cut(s) 709, 1078
PspGI CCWGG 2 cut(s) 476, 646
PspN4I GGNNCC 4 cut(s) 265, 266, 379, 835
PspOMI GGGCCC 1 cut(s) 264
PspPI GGNCC 3 cut(s) 264, 265, 330
PsuI RGATCY 1 cut(s) 1218
PvuI CGATCG 1 cut(s) 865
RsaI GTAC 4 cut(s) 5, 317, 569, 860
RsaNI GTAC 4 cut(s) 4, 316, 568, 859
RseI CAYNNNNRTG 2 cut(s) 199, 288
SacI GAGCTC 1 cut(s) 723
SaqAI TTAA 6 cut(s) 119, 135, 174, 242, 471, 513
SatI GCNGC 3 cut(s) 280, 738, 891
Sau3AI GATC 6 cut(s) 334, 495, 526, 727, 862, 1218
Sau96I GGNCC 3 cut(s) 264, 265, 330
ScrFI CCNGG 2 cut(s) 478, 648
SduI GDGCHC 2 cut(s) 268, 723
SfaNI GCATC 1 cut(s) 1084
SinI GGWCC 1 cut(s) 330
SmiMI CAYNNNNRTG 2 cut(s) 199, 288
SmlI CTYRAG 1 cut(s) 958
SmoI CTYRAG 1 cut(s) 958
SphI GCATGC 1 cut(s) 204
SspMI CTAG 2 cut(s) 374, 920
SstI GAGCTC 1 cut(s) 723
StyD4I CCNGG 2 cut(s) 476, 646
StyI CCWWGG 1 cut(s) 622
TaaI ACNGT 7 cut(s) 275, 305, 371, 406, 830, 926, 1046
TaiI ACGT 3 cut(s) 79, 947, 1112
TaqI TCGA 3 cut(s) 453, 617, 1100
TatI WGTACW 1 cut(s) 3
TfiI GAWTC 3 cut(s) 113, 521, 967
Tru1I TTAA 6 cut(s) 119, 135, 174, 242, 471, 513
Tru9I TTAA 6 cut(s) 119, 135, 174, 242, 471, 513
TscAI CASTG 1 cut(s) 409
TseFI GTSAC 1 cut(s) 1000
TseI GCWGC 3 cut(s) 279, 737, 890
Tsp45I GTSAC 1 cut(s) 1000
TspDTI ATGAA 5 cut(s) 126, 701, 855, 1011, 1082
TspGWI ACGGA 2 cut(s) 515, 918
TspRI CASTG 1 cut(s) 409
Van91I CCANNNNNTGG 2 cut(s) 544, 843
VpaK11BI GGWCC 1 cut(s) 330
VspI ATTAAT 2 cut(s) 119, 135
XapI RAATTY 5 cut(s) 49, 421, 704, 806, 908
XbaI TCTAGA 1 cut(s) 919
XceI RCATGY 2 cut(s) 200, 204
XmnI GAANNNNTTC 1 cut(s) 1232
XspI CTAG 2 cut(s) 374, 920
Zsp2I ATGCAT 1 cut(s) 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.