Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0001757

Physical Location & Seq

Genomic Coordinates Forward (+)

21636053 .. 21637317

Gene Structure 1265 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G252000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGGGTCAGTGCTTTCGCAAAATGTCTGTGGGAGACGAAATGCAAATGCAAATGCAAATGAAGCAATGGCCGCCGTGGTCTGATCTTCCTCCTAAACTTGCGTCAAACATAGCAGAGCGTCTAGGCCCCATCGAGCTTCTGAGTTTCCGGAGCGTCTGCAAGGCTTGGAACTCTGCTTCTTCCACTGCCTCAGCTAAAATTGAATCCACACCAGACTTTGAACCCTGGTTTCTACTGTATGCTGAGGATTCTGATCATAAATGCCAATTGGTCACAGAAACTGGTAAGAAGTTCACCATGAGACTTCCAGAACTGGACGGAACAACTTGCCTTGCATCAAACCAAGGATGGCTTCTTTTGTTCAAGAAACAAGGTCTTGAAGGTGAAGCTGTTGGTAATTGTGGTGGTGCTTCATCAATGTTCTTCTTTCGGCCCTTCTCCAAAACAAAAATAGACCTTCCGGGATGCCCTTTCTTGGAGCTCTCTGATCATGTTGCAGCATTTTCGTGTGCTCCAACTTCCCGGGATTGCACAGTTTCTGTCATAAACCGCGTCAATGATTATGAACTGAAGCTGCATTTACTTCGCCGCGGAGCCGAGGAATGGTTCCAATATGACATTCCTTGTTCAGGAATCGGTACAATCAATTGCGCTGTTTACCACACTGAAAAACAAGAATTATACTTTTTCGACCATACAGACCGTGTGCTCATTATTGTATCTACTATTCATAAGCCAATAAGCTGGAGGTTTTCCAGAAGGTCTTCTGAGTATTCTGTGGGACTCAAGTCAGATTTCATTGTTTACGCTAGTTATTTCAAGAACACTGACATGAAGAAGAAGCTGGGGTTGCCAGATGATGTGGATGTTTCGTTTTCTACTTGTGGGACACAAAGGAAGTCTGGTGACCAGGACAGTTTCGTTTACTGTGAGAGCATTTCTGGCGATCGTGTTGAAGAATCCAAGAGCCATCAACTCAAAGGGATATGGATCTACCCAAAATTCTGCCAAGTCCCTCCAAAAGAAGAGACTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

346

Amino Acids

39.21

Weight (kDa)

6.2

Isoelectric Point (pI)

38.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001757)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24380 FvH4_2g24390 FvH4_2g24391 FvH4_2g24410 FvH4_2g24671 FvH4_2g24690 FvH4_2g24690 FvH4_2g24690 FvH4_2g24700
malus_domestica	MD11G1297700.v1.1
prunus_persica	Prupe.4G274600_v2.0.a1 Prupe.8G252000_v2.0.a1
pyrus_communis	pycom06g03770
rosa_chinensis	RchiOBHm_Chr6g0292521 RchiOBHm_Chr6g0292531
rosa_laevigata	RLG00000012013 RLG00000012014 RLG00000012015 RLG00000012016 RLG00000012017 RLG00000012049
rosa_multiflora	Rmu_sc0001354.1_g000031 Rmu_sc0001354.1_g000032 Rmu_sc0003908.1_g000003
rosa_roxburghii	Rroxscaffold_7G00174980 Rroxscaffold_7G00175290
rosa_rugosa	Rorug06G0224900 Rorug06G0227400 Rorug06G0227500
rosa_samantha	Rh4AG099200 Rh4CG108900 Rh4CG412100 Rh4DG094200 Rh6AG338000 Rh6AG340600 Rh6AG340700 Rh6BG345300 Rh6BG348000 Rh6BG348100 Rh6BG348200 Rh6CG352300 Rh6CG354900 Rh6CG355000 Rh6DG338300 Rh6DG340700 Rh6DG340800
rosa_wichuraiana	Rw6G029670 Rw6G029680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	552, 591
AccIII	TCCGGA	1 cut(s)	147
AciI	CCGC	4 cut(s)	71, 550, 589, 591
AclWI	GGATC	1 cut(s)	998
AcoI	YGGCCR	1 cut(s)	68
AcsI	RAATTY	1 cut(s)	1001
AcuI	CTGAAG	1 cut(s)	590
AfaI	GTAC	1 cut(s)	640
AfiI	CCNNNNNNNGG	3 cut(s)	475, 603, 629
AgsI	TTSAA	6 cut(s)	203, 221, 364, 380, 820, 956
AjnI	CCWGG	2 cut(s)	224, 909
AjuI	GAANNNNNNNTTGG	4 cut(s)	336, 368, 603, 635
AluBI	AGCT	7 cut(s)	136, 194, 389, 481, 574, 744, 844
AluI	AGCT	7 cut(s)	136, 194, 389, 481, 574, 744, 844
Alw21I	GWGCWC	3 cut(s)	483, 514, 711
Alw26I	GTCTC	3 cut(s)	27, 295, 1022
AlwI	GGATC	1 cut(s)	998
AlwNI	CAGNNNCTG	2 cut(s)	281, 539
Ama87I	CYCGRG	1 cut(s)	522
Aor13HI	TCCGGA	1 cut(s)	147
AoxI	GGCC	3 cut(s)	68, 124, 431
ApeKI	GCWGC	2 cut(s)	497, 574
ApoI	RAATTY	1 cut(s)	1001
Asp700I	GAANNNNTTC	1 cut(s)	763
AspLEI	GCGC	1 cut(s)	653
AspS9I	GGNCC	2 cut(s)	125, 432
AsuC2I	CCSGG	3 cut(s)	462, 523, 524
AsuHPI	GGTGA	3 cut(s)	286, 395, 917
AvaI	CYCGRG	1 cut(s)	522
BanII	GRGCYC	1 cut(s)	483
BbsI	GAAGAC	1 cut(s)	756
Bbv12I	GWGCWC	3 cut(s)	483, 514, 711
BbvCI	CCTCAGC	2 cut(s)	190, 243
BbvI	GCAGC	2 cut(s)	509, 561
BccI	CCATC	3 cut(s)	137, 342, 978
BceAI	ACGGC	1 cut(s)	58
BcgI	CGANNNNNNTGC	4 cut(s)	486, 520, 566, 600
BciT130I	CCWGG	2 cut(s)	226, 911
BclI	TGATCA	2 cut(s)	253, 487
BcnI	CCSGG	3 cut(s)	462, 523, 524
BcoDI	GTCTC	3 cut(s)	27, 295, 1022
BfaI	CTAG	2 cut(s)	122, 810
BisI	GCNGC	4 cut(s)	71, 498, 575, 589
BlsI	GCNGC	4 cut(s)	72, 499, 576, 590
Bme1390I	CCNGG	5 cut(s)	226, 462, 523, 524, 911
BmeT110I	CYCGRG	1 cut(s)	522
BmgT120I	GGNCC	2 cut(s)	125, 432
BmiI	GGNNCC	3 cut(s)	127, 595, 608
BmrFI	CCNGG	5 cut(s)	226, 462, 523, 524, 911
BmsI	GCATC	2 cut(s)	344, 455
BoxI	GACNNNNGTC	1 cut(s)	787
BpiI	GAAGAC	1 cut(s)	756
BpmI	CTGGAG	1 cut(s)	766
Bpu10I	CCTNAGC	2 cut(s)	190, 243
BpuEI	CTTGAG	1 cut(s)	770
BpuMI	CCSGG	3 cut(s)	462, 523, 524
BsaBI	GATNNNNATC	2 cut(s)	252, 989
BsaJI	CCNNGG	6 cut(s)	74, 224, 343, 522, 589, 597
BsaWI	WCCGGW	1 cut(s)	147
Bsc4I	CCNNNNNNNGG	3 cut(s)	475, 603, 629
Bse1I	ACTGG	2 cut(s)	286, 318
Bse3DI	GCAATG	1 cut(s)	71
Bse8I	GATNNNNATC	2 cut(s)	252, 989
BseAI	TCCGGA	1 cut(s)	147
BseBI	CCWGG	2 cut(s)	226, 911
BseDI	CCNNGG	6 cut(s)	74, 224, 343, 522, 589, 597
BseGI	GGATG	3 cut(s)	353, 470, 871
BseJI	GATNNNNATC	2 cut(s)	252, 989
BseLI	CCNNNNNNNGG	3 cut(s)	475, 603, 629
BseMI	GCAATG	1 cut(s)	71
BseMII	CTCAG	4 cut(s)	131, 204, 234, 759
BseNI	ACTGG	2 cut(s)	286, 318
BseXI	GCAGC	2 cut(s)	509, 561
BseYI	CCCAGC	1 cut(s)	844
Bsh1236I	CGCG	2 cut(s)	552, 591
Bsh1285I	CGRYCG	1 cut(s)	949
BshFI	GGCC	3 cut(s)	70, 126, 433
BsiEI	CGRYCG	1 cut(s)	949
BsiHKAI	GWGCWC	3 cut(s)	483, 514, 711
BsiHKCI	CYCGRG	1 cut(s)	522
BsiSI	CCGG	3 cut(s)	148, 461, 523
BslFI	GGGAC	3 cut(s)	795, 901, 998
BslI	CCNNNNNNNGG	3 cut(s)	475, 603, 629
BsmAI	GTCTC	3 cut(s)	27, 295, 1022
BsmBI	CGTCTC	1 cut(s)	27
BsmFI	GGGAC	3 cut(s)	795, 901, 998
BsnI	GGCC	3 cut(s)	70, 126, 433
BsoBI	CYCGRG	1 cut(s)	522
Bsp1286I	GDGCHC	3 cut(s)	483, 514, 711
Bsp13I	TCCGGA	1 cut(s)	147
Bsp143I	GATC	5 cut(s)	82, 253, 487, 946, 990
BspACI	CCGC	4 cut(s)	71, 550, 589, 591
BspANI	GGCC	3 cut(s)	70, 126, 433
BspCNI	CTCAG	4 cut(s)	132, 203, 235, 760
BspEI	TCCGGA	1 cut(s)	147
BspFNI	CGCG	2 cut(s)	552, 591
BspLI	GGNNCC	3 cut(s)	127, 595, 608
BspPI	GGATC	1 cut(s)	998
BsrDI	GCAATG	1 cut(s)	71
BsrI	ACTGG	2 cut(s)	286, 318
BssECI	CCNNGG	6 cut(s)	74, 224, 343, 522, 589, 597
BssMI	GATC	5 cut(s)	82, 253, 487, 946, 990
BssT1I	CCWWGG	1 cut(s)	343
Bst2UI	CCWGG	2 cut(s)	226, 911
Bst4CI	ACNGT	5 cut(s)	237, 535, 704, 917, 929
Bst6I	CTCTTC	1 cut(s)	1020
BstDEI	CTNAG	4 cut(s)	140, 190, 243, 768
BstDSI	CCRYGG	2 cut(s)	74, 589
BstEII	GGTNACC	1 cut(s)	905
BstENI	CCTNNNNNAGG	1 cut(s)	627
BstF5I	GGATG	3 cut(s)	353, 470, 871
BstFNI	CGCG	2 cut(s)	552, 591
BstHHI	GCGC	1 cut(s)	653
BstKTI	GATC	5 cut(s)	85, 256, 490, 949, 993
BstMAI	GTCTC	3 cut(s)	27, 295, 1022
BstMBI	GATC	5 cut(s)	82, 253, 487, 946, 990
BstMCI	CGRYCG	1 cut(s)	949
BstMWI	GCNNNNNNNGC	4 cut(s)	61, 70, 850, 942
BstNI	CCWGG	2 cut(s)	226, 911
BstPAI	GACNNNNGTC	1 cut(s)	787
BstPI	GGTNACC	1 cut(s)	905
BstSCI	CCNGG	5 cut(s)	224, 460, 521, 522, 909
BstUI	CGCG	2 cut(s)	552, 591
BstV1I	GCAGC	2 cut(s)	509, 561
BstV2I	GAAGAC	1 cut(s)	756
BstX2I	RGATCY	1 cut(s)	990
BstXI	CCANNNNNNTGG	1 cut(s)	744
BstYI	RGATCY	1 cut(s)	990
BsuRI	GGCC	3 cut(s)	70, 126, 433
BtgI	CCRYGG	2 cut(s)	74, 589
BtsCI	GGATG	3 cut(s)	353, 470, 871
BtsI	GCAGTG	1 cut(s)	183
BtsIMutI	CAGTG	4 cut(s)	14, 183, 663, 825
CaiI	CAGNNNCTG	2 cut(s)	281, 539
CfoI	GCGC	1 cut(s)	653
Cfr13I	GGNCC	2 cut(s)	125, 432
Cfr42I	CCGCGG	1 cut(s)	592
Cfr9I	CCCGGG	1 cut(s)	522
CseI	GACGC	4 cut(s)	90, 107, 142, 541
Csp6I	GTAC	1 cut(s)	639
CviAII	CATG	3 cut(s)	298, 491, 832
CviQI	GTAC	1 cut(s)	639
DdeI	CTNAG	4 cut(s)	140, 190, 243, 768
DpnI	GATC	5 cut(s)	84, 255, 489, 948, 992
DpnII	GATC	5 cut(s)	82, 253, 487, 946, 990
EaeI	YGGCCR	1 cut(s)	68
Eam1104I	CTCTTC	1 cut(s)	1020
EarI	CTCTTC	1 cut(s)	1020
Ecl136II	GAGCTC	1 cut(s)	481
Eco130I	CCWWGG	1 cut(s)	343
Eco24I	GRGCYC	1 cut(s)	483
Eco53kI	GAGCTC	1 cut(s)	481
Eco57I	CTGAAG	1 cut(s)	590
Eco88I	CYCGRG	1 cut(s)	522
Eco91I	GGTNACC	1 cut(s)	905
EcoICRI	GAGCTC	1 cut(s)	481
EcoNI	CCTNNNNNAGG	1 cut(s)	627
EcoO109I	RGGNCCY	1 cut(s)	125
EcoO65I	GGTNACC	1 cut(s)	905
EcoRII	CCWGG	2 cut(s)	224, 909
EcoT14I	CCWWGG	1 cut(s)	343
EcoT38I	GRGCYC	1 cut(s)	483
ErhI	CCWWGG	1 cut(s)	343
Esp3I	CGTCTC	1 cut(s)	27
FaeI	CATG	3 cut(s)	301, 494, 835
FalI	AAGNNNNNCTT	2 cut(s)	336, 368
FaqI	GGGAC	3 cut(s)	795, 901, 998
FatI	CATG	3 cut(s)	297, 490, 831
FbaI	TGATCA	2 cut(s)	253, 487
Fnu4HI	GCNGC	4 cut(s)	71, 498, 575, 589
FokI	GGATG	3 cut(s)	360, 477, 878
FriOI	GRGCYC	1 cut(s)	483
Fsp4HI	GCNGC	4 cut(s)	71, 498, 575, 589
FspBI	CTAG	2 cut(s)	122, 810
GlaI	GCGC	1 cut(s)	652
GluI	GCNGC	4 cut(s)	71, 498, 575, 589
GsaI	CCCAGC	1 cut(s)	848
GsuI	CTGGAG	1 cut(s)	766
HaeIII	GGCC	3 cut(s)	70, 126, 433
HapII	CCGG	3 cut(s)	148, 461, 523
HgaI	GACGC	4 cut(s)	90, 107, 142, 541
HhaI	GCGC	1 cut(s)	653
Hin1II	CATG	3 cut(s)	301, 494, 835
Hin6I	GCGC	1 cut(s)	651
HinP1I	GCGC	1 cut(s)	651
HinfI	GANTC	5 cut(s)	203, 248, 633, 783, 959
HpaII	CCGG	3 cut(s)	148, 461, 523
HphI	GGTGA	3 cut(s)	286, 395, 917
Hpy166II	GTNNAC	4 cut(s)	294, 658, 805, 925
Hpy188I	TCNGA	6 cut(s)	82, 141, 253, 487, 769, 793
Hpy188III	TCNNGA	7 cut(s)	148, 308, 364, 377, 630, 756, 820
Hpy8I	GTNNAC	4 cut(s)	294, 658, 805, 925
HpyAV	CCTTC	4 cut(s)	374, 445, 467, 753
HpyCH4III	ACNGT	5 cut(s)	237, 535, 704, 917, 929
HpyCH4V	TGCA	8 cut(s)	43, 49, 55, 159, 335, 497, 531, 577
HpyF10VI	GCNNNNNNNGC	4 cut(s)	61, 70, 850, 942
HpyF3I	CTNAG	4 cut(s)	140, 190, 243, 768
Hsp92II	CATG	3 cut(s)	301, 494, 835
HspAI	GCGC	1 cut(s)	651
Kpn2I	TCCGGA	1 cut(s)	147
Ksp22I	TGATCA	2 cut(s)	253, 487
KspI	CCGCGG	1 cut(s)	592
Kzo9I	GATC	5 cut(s)	82, 253, 487, 946, 990
LmnI	GCTCC	4 cut(s)	150, 478, 517, 593
Lsp1109I	GCAGC	2 cut(s)	509, 561
LweI	GCATC	2 cut(s)	344, 455
MaeI	CTAG	2 cut(s)	122, 810
MaeIII	GTNAC	2 cut(s)	271, 905
MalI	GATC	5 cut(s)	84, 255, 489, 948, 992
MboI	GATC	5 cut(s)	82, 253, 487, 946, 990
MboII	GAAGA	8 cut(s)	77, 171, 415, 756, 847, 850, 968, 1037
MfeI	CAATTG	2 cut(s)	266, 646
MflI	RGATCY	1 cut(s)	990
MhlI	GDGCHC	3 cut(s)	483, 514, 711
MluCI	AATT	6 cut(s)	198, 266, 397, 646, 677, 1001
MlyI	GAGTC	1 cut(s)	777
MmeI	TCCRAC	1 cut(s)	539
MnlI	CCTC	6 cut(s)	99, 199, 238, 592, 741, 1026
MroI	TCCGGA	1 cut(s)	147
MroXI	GAANNNNTTC	1 cut(s)	763
MslI	CAYNNNNRTG	2 cut(s)	505, 830
MspA1I	CMGCKG	1 cut(s)	591
MspI	CCGG	3 cut(s)	148, 461, 523
MspR9I	CCNGG	5 cut(s)	226, 462, 523, 524, 911
MunI	CAATTG	2 cut(s)	266, 646
MvaI	CCWGG	2 cut(s)	226, 911
MvnI	CGCG	2 cut(s)	552, 591
MwoI	GCNNNNNNNGC	4 cut(s)	61, 70, 850, 942
NciI	CCSGG	3 cut(s)	462, 523, 524
NdeII	GATC	5 cut(s)	82, 253, 487, 946, 990
NlaIII	CATG	3 cut(s)	301, 494, 835
NlaIV	GGNNCC	3 cut(s)	127, 595, 608
NmeAIII	GCCGAG	1 cut(s)	622
NmuCI	GTSAC	2 cut(s)	271, 905
PdmI	GAANNNNTTC	1 cut(s)	763
PfeI	GAWTC	4 cut(s)	203, 248, 633, 959
PfoI	TCCNGGA	1 cut(s)	460
PkrI	GCNGC	4 cut(s)	72, 499, 576, 590
Ple19I	CGATCG	1 cut(s)	949
PleI	GAGTC	1 cut(s)	777
PpsI	GAGTC	1 cut(s)	777
PshAI	GACNNNNGTC	1 cut(s)	787
Psp124BI	GAGCTC	1 cut(s)	483
Psp6I	CCWGG	2 cut(s)	224, 909
PspEI	GGTNACC	1 cut(s)	905
PspFI	CCCAGC	1 cut(s)	844
PspGI	CCWGG	2 cut(s)	224, 909
PspN4I	GGNNCC	3 cut(s)	127, 595, 608
PspPI	GGNCC	2 cut(s)	125, 432
PstNI	CAGNNNCTG	2 cut(s)	281, 539
PsuI	RGATCY	1 cut(s)	990
PvuI	CGATCG	1 cut(s)	949
RsaI	GTAC	1 cut(s)	640
RsaNI	GTAC	1 cut(s)	639
RseI	CAYNNNNRTG	2 cut(s)	505, 830
SacI	GAGCTC	1 cut(s)	483
SacII	CCGCGG	1 cut(s)	592
SatI	GCNGC	4 cut(s)	71, 498, 575, 589
Sau3AI	GATC	5 cut(s)	82, 253, 487, 946, 990
Sau96I	GGNCC	2 cut(s)	125, 432
SchI	GAGTC	1 cut(s)	777
ScrFI	CCNGG	5 cut(s)	226, 462, 523, 524, 911
SduI	GDGCHC	3 cut(s)	483, 514, 711
SfaNI	GCATC	2 cut(s)	344, 455
Sfr303I	CCGCGG	1 cut(s)	592
SgrBI	CCGCGG	1 cut(s)	592
SmaI	CCCGGG	1 cut(s)	524
SmiMI	CAYNNNNRTG	2 cut(s)	505, 830
SmlI	CTYRAG	1 cut(s)	785
SmoI	CTYRAG	1 cut(s)	785
Sse9I	AATT	6 cut(s)	198, 266, 397, 646, 677, 1001
SsiI	CCGC	4 cut(s)	71, 550, 589, 591
SspMI	CTAG	2 cut(s)	122, 810
SstI	GAGCTC	1 cut(s)	483
StyD4I	CCNGG	5 cut(s)	224, 460, 521, 522, 909
StyI	CCWWGG	1 cut(s)	343
TaaI	ACNGT	5 cut(s)	237, 535, 704, 917, 929
TaqI	TCGA	2 cut(s)	132, 690
TasI	AATT	6 cut(s)	198, 266, 397, 646, 677, 1001
TauI	GCSGC	2 cut(s)	73, 591
TfiI	GAWTC	4 cut(s)	203, 248, 633, 959
TscAI	CASTG	4 cut(s)	14, 190, 670, 832
TseFI	GTSAC	2 cut(s)	271, 905
TseI	GCWGC	2 cut(s)	497, 574
Tsp45I	GTSAC	2 cut(s)	271, 905
TspDTI	ATGAA	6 cut(s)	74, 402, 579, 719, 787, 848
TspGWI	ACGGA	1 cut(s)	333
TspMI	CCCGGG	1 cut(s)	522
TspRI	CASTG	4 cut(s)	14, 190, 670, 832
XagI	CCTNNNNNAGG	1 cut(s)	627
XapI	RAATTY	1 cut(s)	1001
XmaI	CCCGGG	1 cut(s)	522
XmnI	GAANNNNTTC	1 cut(s)	763
XspI	CTAG	2 cut(s)	122, 810

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.