Rroxscaffold_7G00174980

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0001757
Physical Location & Seq
Reverse (-)
14683186 .. 14692619
9434 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00174980.1

Sequence Viewer

Length: 1050 bp
ATGACGGGTCTTTTCGGGAACCGTTTCTTCACAAGAATAAAGAAAGCAACATTCTATGCGATCAAAGGAGGTCGCAGAAGTCCAGAGAAGCAAAAGGAAATTAGGGACTGGTCCGATCTCCCTCCTGAACTTCTTTCACTCATAGCAGAACGTGCAGGCCTATTCCCGCTTCAGAGTTTCCATCGTGTTTGTAAGGCTTGGAACTCTGCTTCTTCTGCAGCTTTACCTCAGATACTTGAGACAGAACTAAACCAAGGACCTTTGTTTTTACTATATAATGATAAAAGTTCTAAGTGCAAGGTGCTAACTGCAAGTGGCAAGAAGTTGATAATGAGTCGCCCAGAACTGGATAGAACAACTTGCCTTGCAACATACCAAGGATGGCTTCTTCTGTTCCAACAAGGATGTGGTTCCATGTTCTTCTTTCACCTCTTCTCTCGTCGCAGAATAGACCTTCCACAGTTCCCAGACTCGGAACTCACTGATCATGTTGCAGCAGTTTCATGTTCTCCAACGTCTCAGGATTGTATGGTTTGCGTTATTAGTCGTAGCAATGATGCTGAATTGGAAGCCAAGGTACTATACCTTGGAGAAGACCAGGCATGGACAAAACTCAAGTATTCTCGTTCCCGAGTTGACACTGGTACAATCAAATTTGCTGTATATCACACTGGAATATTCTGCTTTTTCGACCATAGAAATGATCGAATGCTCACCCTATCTACTGAAAATCGAGCTCACAACTGGAATGTCATTAACTTAATAATATTCTCCCCGAAAAATGAGTCGAGACCTGGAACATTATTGTTTCACAGGGATGAGCTGAAGAGAAAGTTCGATGACATGAAGAAGAAGCTGGGCTTGACAAAGGGTGTTTCGATTTCTACTTGTGGCACAATAACACTATCTGAAGGCTTGCCCAAGTTTATTTTTAATGAGAGCATTAGTGATCATGCGGAAGAATCCAAGAGAAAACATTTCAAAGGGGTTACAGTAATTGCTTCTGTTTACAATCTTTTATGTCAGCTAGTGAACAACATATATATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

349

Amino Acids

39.76

Weight (kDa)

9.28

Isoelectric Point (pI)

47.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 112 - 241 2.8e-15 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 167, 956
AcsI RAATTY 1 cut(s) 653
AcuI CTGAAG 3 cut(s) 155, 845, 930
AfaI GTAC 2 cut(s) 579, 646
AfiI CCNNNNNNNGG 2 cut(s) 346, 472
AgsI TTSAA 1 cut(s) 982
AjnI CCWGG 2 cut(s) 597, 793
AjuI GAANNNNNNNTTGG 2 cut(s) 369, 401
AluBI AGCT 5 cut(s) 221, 737, 823, 856, 1027
AluI AGCT 5 cut(s) 221, 737, 823, 856, 1027
Alw21I GWGCWC 1 cut(s) 739
Alw26I GTCTC 3 cut(s) 233, 522, 784
Ama87I CYCGRG 1 cut(s) 630
AoxI GGCC 1 cut(s) 157
ApeKI GCWGC 2 cut(s) 218, 494
ApoI RAATTY 1 cut(s) 653
ArsI GACNNNNNNTTYG 2 cut(s) 770, 802
Asp700I GAANNNNTTC 1 cut(s) 23
AspS9I GGNCC 2 cut(s) 111, 257
AsuHPI GGTGA 2 cut(s) 419, 706
AvaI CYCGRG 1 cut(s) 630
AvaII GGWCC 2 cut(s) 111, 257
BanII GRGCYC 1 cut(s) 739
BarI GAAGNNNNNNTAC 2 cut(s) 561, 593
BbsI GAAGAC 1 cut(s) 600
Bbv12I GWGCWC 1 cut(s) 739
BbvI GCAGC 2 cut(s) 230, 506
BccI CCATC 2 cut(s) 189, 375
BciT130I CCWGG 2 cut(s) 599, 795
BclI TGATCA 2 cut(s) 484, 949
BcoDI GTCTC 3 cut(s) 233, 522, 784
BfaI CTAG 1 cut(s) 1028
BfmI CTRYAG 1 cut(s) 216
BisI GCNGC 2 cut(s) 219, 495
BlsI GCNGC 2 cut(s) 220, 496
Bme1390I CCNGG 2 cut(s) 599, 795
Bme18I GGWCC 2 cut(s) 111, 257
BmeT110I CYCGRG 1 cut(s) 630
BmgT120I GGNCC 2 cut(s) 111, 257
BmiI GGNNCC 2 cut(s) 20, 412
BmrFI CCNGG 2 cut(s) 599, 795
BmsI GCATC 1 cut(s) 547
BpiI GAAGAC 1 cut(s) 600
BpuEI CTTGAG 2 cut(s) 257, 599
BsaI GGTCTC 1 cut(s) 784
BsaJI CCNNGG 4 cut(s) 253, 376, 573, 586
Bsc4I CCNNNNNNNGG 2 cut(s) 346, 472
Bse1I ACTGG 5 cut(s) 113, 351, 646, 676, 749
Bse3DI GCAATG 1 cut(s) 559
BseBI CCWGG 2 cut(s) 599, 795
BseDI CCNNGG 4 cut(s) 253, 376, 573, 586
BseGI GGATG 3 cut(s) 386, 410, 823
BseLI CCNNNNNNNGG 2 cut(s) 346, 472
BseMI GCAATG 1 cut(s) 559
BseMII CTCAG 2 cut(s) 242, 533
BseNI ACTGG 5 cut(s) 113, 351, 646, 676, 749
BseXI GCAGC 2 cut(s) 230, 506
BseYI CCCAGC 1 cut(s) 856
BsgI GTGCAG 1 cut(s) 174
BshFI GGCC 1 cut(s) 159
BsiHKAI GWGCWC 1 cut(s) 739
BsiHKCI CYCGRG 1 cut(s) 630
BslFI GGGAC 1 cut(s) 119
BslI CCNNNNNNNGG 2 cut(s) 346, 472
BsmAI GTCTC 3 cut(s) 233, 522, 784
BsmBI CGTCTC 1 cut(s) 522
BsmFI GGGAC 1 cut(s) 119
BsmI GAATGC 1 cut(s) 714
BsnI GGCC 1 cut(s) 159
Bso31I GGTCTC 1 cut(s) 784
BsoBI CYCGRG 1 cut(s) 630
Bsp1286I GDGCHC 1 cut(s) 739
Bsp143I GATC 5 cut(s) 60, 115, 484, 703, 949
BspACI CCGC 2 cut(s) 167, 956
BspANI GGCC 1 cut(s) 159
BspCNI CTCAG 2 cut(s) 241, 532
BspLI GGNNCC 2 cut(s) 20, 412
BspMAI CTGCAG 1 cut(s) 220
BspTNI GGTCTC 1 cut(s) 784
BsrDI GCAATG 1 cut(s) 559
BsrI ACTGG 5 cut(s) 113, 351, 646, 676, 749
BssECI CCNNGG 4 cut(s) 253, 376, 573, 586
BssMI GATC 5 cut(s) 60, 115, 484, 703, 949
BssT1I CCWWGG 4 cut(s) 253, 376, 573, 586
Bst2UI CCWGG 2 cut(s) 599, 795
Bst4CI ACNGT 3 cut(s) 23, 462, 994
Bst6I CTCTTC 2 cut(s) 437, 821
BstAPI GCANNNNNTGC 1 cut(s) 152
BstC8I GCNNGC 2 cut(s) 157, 917
BstDEI CTNAG 3 cut(s) 228, 291, 519
BstF5I GGATG 3 cut(s) 386, 410, 823
BstKTI GATC 5 cut(s) 63, 118, 487, 706, 952
BstMAI GTCTC 3 cut(s) 233, 522, 784
BstMBI GATC 5 cut(s) 60, 115, 484, 703, 949
BstMWI GCNNNNNNNGC 2 cut(s) 152, 215
BstNI CCWGG 2 cut(s) 599, 795
BstSCI CCNGG 2 cut(s) 597, 793
BstSFI CTRYAG 1 cut(s) 216
BstV1I GCAGC 2 cut(s) 230, 506
BstV2I GAAGAC 1 cut(s) 600
BsuRI GGCC 1 cut(s) 159
BtsCI GGATG 3 cut(s) 386, 410, 823
BtsIMutI CAGTG 3 cut(s) 480, 639, 669
Cac8I GCNNGC 2 cut(s) 157, 917
Cfr13I GGNCC 2 cut(s) 111, 257
Csp6I GTAC 2 cut(s) 578, 645
CviAII CATG 6 cut(s) 415, 488, 504, 603, 844, 953
CviQI GTAC 2 cut(s) 578, 645
DdeI CTNAG 3 cut(s) 228, 291, 519
DpnI GATC 5 cut(s) 62, 117, 486, 705, 951
DpnII GATC 5 cut(s) 60, 115, 484, 703, 949
Eam1104I CTCTTC 2 cut(s) 437, 821
EarI CTCTTC 2 cut(s) 437, 821
Ecl136II GAGCTC 1 cut(s) 737
Eco130I CCWWGG 4 cut(s) 253, 376, 573, 586
Eco147I AGGCCT 1 cut(s) 159
Eco24I GRGCYC 1 cut(s) 739
Eco31I GGTCTC 1 cut(s) 784
Eco47I GGWCC 2 cut(s) 111, 257
Eco53kI GAGCTC 1 cut(s) 737
Eco57I CTGAAG 3 cut(s) 155, 845, 930
Eco88I CYCGRG 1 cut(s) 630
EcoICRI GAGCTC 1 cut(s) 737
EcoO109I RGGNCCY 1 cut(s) 257
EcoRII CCWGG 2 cut(s) 597, 793
EcoT14I CCWWGG 4 cut(s) 253, 376, 573, 586
EcoT38I GRGCYC 1 cut(s) 739
ErhI CCWWGG 4 cut(s) 253, 376, 573, 586
Esp3I CGTCTC 1 cut(s) 522
FaeI CATG 6 cut(s) 418, 491, 507, 606, 847, 956
FalI AAGNNNNNCTT 4 cut(s) 369, 401, 845, 877
FaqI GGGAC 1 cut(s) 119
FatI CATG 6 cut(s) 414, 487, 503, 602, 843, 952
FauI CCCGC 1 cut(s) 174
FbaI TGATCA 2 cut(s) 484, 949
Fnu4HI GCNGC 2 cut(s) 219, 495
FokI GGATG 3 cut(s) 393, 417, 830
FriOI GRGCYC 1 cut(s) 739
Fsp4HI GCNGC 2 cut(s) 219, 495
FspBI CTAG 1 cut(s) 1028
GluI GCNGC 2 cut(s) 219, 495
GsaI CCCAGC 1 cut(s) 860
HaeIII GGCC 1 cut(s) 159
Hin1II CATG 6 cut(s) 418, 491, 507, 606, 847, 956
HincII GTYRAC 1 cut(s) 637
HindII GTYRAC 1 cut(s) 637
HinfI GANTC 4 cut(s) 334, 470, 785, 962
HphI GGTGA 2 cut(s) 419, 706
Hpy166II GTNNAC 3 cut(s) 637, 1009, 1033
Hpy188I TCNGA 5 cut(s) 115, 174, 231, 475, 910
Hpy188III TCNNGA 6 cut(s) 16, 83, 125, 521, 630, 789
Hpy8I GTNNAC 3 cut(s) 637, 1009, 1033
Hpy99I CGWCG 1 cut(s) 444
HpyAV CCTTC 2 cut(s) 464, 905
HpyCH4III ACNGT 3 cut(s) 23, 462, 994
HpyCH4IV ACGT 2 cut(s) 151, 515
HpyCH4V TGCA 6 cut(s) 155, 218, 297, 311, 368, 494
HpyF10VI GCNNNNNNNGC 2 cut(s) 152, 215
HpyF3I CTNAG 3 cut(s) 228, 291, 519
HpySE526I ACGT 2 cut(s) 151, 515
Hsp92II CATG 6 cut(s) 418, 491, 507, 606, 847, 956
Ksp22I TGATCA 2 cut(s) 484, 949
Kzo9I GATC 5 cut(s) 60, 115, 484, 703, 949
Lsp1109I GCAGC 2 cut(s) 230, 506
LweI GCATC 1 cut(s) 547
MaeI CTAG 1 cut(s) 1028
MaeII ACGT 2 cut(s) 151, 515
MaeIII GTNAC 1 cut(s) 988
MalI GATC 5 cut(s) 62, 117, 486, 705, 951
MboI GATC 5 cut(s) 60, 115, 484, 703, 949
MhlI GDGCHC 1 cut(s) 739
MluCI AATT 4 cut(s) 99, 563, 653, 996
MlyI GAGTC 3 cut(s) 343, 464, 794
MmeI TCCRAC 2 cut(s) 421, 536
MnlI CCTC 4 cut(s) 62, 132, 237, 440
MroXI GAANNNNTTC 1 cut(s) 23
MseI TTAA 3 cut(s) 756, 761, 933
MslI CAYNNNNRTG 2 cut(s) 699, 816
MspR9I CCNGG 2 cut(s) 599, 795
Mva1269I GAATGC 1 cut(s) 714
MvaI CCWGG 2 cut(s) 599, 795
MwoI GCNNNNNNNGC 2 cut(s) 152, 215
NdeII GATC 5 cut(s) 60, 115, 484, 703, 949
NlaIII CATG 6 cut(s) 418, 491, 507, 606, 847, 956
NlaIV GGNNCC 2 cut(s) 20, 412
PceI AGGCCT 1 cut(s) 159
PctI GAATGC 1 cut(s) 714
PdmI GAANNNNTTC 1 cut(s) 23
PfeI GAWTC 1 cut(s) 962
PkrI GCNGC 2 cut(s) 220, 496
PleI GAGTC 3 cut(s) 342, 464, 793
PpsI GAGTC 3 cut(s) 342, 464, 793
PpuMI RGGWCCY 1 cut(s) 257
Psp124BI GAGCTC 1 cut(s) 739
Psp5II RGGWCCY 1 cut(s) 257
Psp6I CCWGG 2 cut(s) 597, 793
PspFI CCCAGC 1 cut(s) 856
PspGI CCWGG 2 cut(s) 597, 793
PspN4I GGNNCC 2 cut(s) 20, 412
PspPI GGNCC 2 cut(s) 111, 257
PspPPI RGGWCCY 1 cut(s) 257
PstI CTGCAG 1 cut(s) 220
RsaI GTAC 2 cut(s) 579, 646
RsaNI GTAC 2 cut(s) 578, 645
RseI CAYNNNNRTG 2 cut(s) 699, 816
SacI GAGCTC 1 cut(s) 739
SaqAI TTAA 3 cut(s) 756, 761, 933
SatI GCNGC 2 cut(s) 219, 495
Sau3AI GATC 5 cut(s) 60, 115, 484, 703, 949
Sau96I GGNCC 2 cut(s) 111, 257
SchI GAGTC 3 cut(s) 343, 464, 794
ScrFI CCNGG 2 cut(s) 599, 795
SduI GDGCHC 1 cut(s) 739
SfaNI GCATC 1 cut(s) 547
SfcI CTRYAG 1 cut(s) 216
SinI GGWCC 2 cut(s) 111, 257
SmiMI CAYNNNNRTG 2 cut(s) 699, 816
SmlI CTYRAG 2 cut(s) 236, 614
SmoI CTYRAG 2 cut(s) 236, 614
Sse9I AATT 4 cut(s) 99, 563, 653, 996
SseBI AGGCCT 1 cut(s) 159
SsiI CCGC 2 cut(s) 167, 956
SspI AATATT 2 cut(s) 678, 768
SspMI CTAG 1 cut(s) 1028
SstI GAGCTC 1 cut(s) 739
StuI AGGCCT 1 cut(s) 159
StyD4I CCNGG 2 cut(s) 597, 793
StyI CCWWGG 4 cut(s) 253, 376, 573, 586
TaaI ACNGT 3 cut(s) 23, 462, 994
TaiI ACGT 2 cut(s) 154, 518
TaqI TCGA 6 cut(s) 690, 706, 733, 788, 837, 878
TasI AATT 4 cut(s) 99, 563, 653, 996
TfiI GAWTC 1 cut(s) 962
Tru1I TTAA 3 cut(s) 756, 761, 933
Tru9I TTAA 3 cut(s) 756, 761, 933
TscAI CASTG 3 cut(s) 487, 646, 676
TseI GCWGC 2 cut(s) 218, 494
TspDTI ATGAA 2 cut(s) 492, 860
TspRI CASTG 3 cut(s) 487, 646, 676
VpaK11BI GGWCC 2 cut(s) 111, 257
XapI RAATTY 1 cut(s) 653
XcmI CCANNNNNNNNNTGG 1 cut(s) 404
XmnI GAANNNNTTC 1 cut(s) 23
XspI CTAG 1 cut(s) 1028
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.