Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001757

Physical Location & Seq

Genomic Coordinates Reverse (-)

14559654 .. 14560548

Gene Structure 895 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012013

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGCCACAATGGTCTGATCTTCCTCCTGAACTTCTATATCCAATTGCAGAGTCCTTAGACCTAATCGATCTTCTGGGTTTTCGTGGCGTGTGCAAATCTTGGAAGTCTGCTTCTTCCACTGCTTCAGCTCAATCTTCAGCTAAACCCTGGTTTCTACTGTATAGGGAAAACAATTCTGAGTGCCAGTTGCTGAGTGAAAGTGATCATAAGTACACCATCAGTCTTCCAGAACCGGATGGAGCAACTTGTCTTGCTTCATCCCAAGGATGGTTGCTTCTTTCATCTCCTCCGAATTCCCAAGATTGCATCCTTTGTGTCATTAGCCGTACCAATAATGATGAATGGGAGCTGAATTTACTTCGTCGGGGAGCCAATGAATGGACCACAAATAATTATTCTGGTTACTCAAAACTGAAGACAATCAAAGGTGCTGCTTATCACAAAGAGGACGGAGAGTTCAACTTCTTCGATCCAGATGACAAGTCACTCACATTTTCTACTAAGAACCTACGCTGGCGCTATTTTAACATAATCTCTCCCGGAACGGCAGATATAGAAGAAGTACCATTTGAATATTTCATACATTATTTTCAGAGAAAGAACTTGGAGAATAAGCTCGAGTTGGCAGAAAATGTTTCACTTTCTACTTGTGGGACACAGATGACTGATGGCACACTTGTTTTCAGTGAGAGCATTACTGCTGATGCTGCTGACGACCAATCCAAGAGACGTCAACTTAAAGGGGTTTGGATCCACCCCAGGTTCTACCAAGTCTCTTCTAATGATCAGAGTTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

266

Amino Acids

30.2

Weight (kDa)

4.94

Isoelectric Point (pI)

51.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	4 - 39	9.1e-08	F-box domain
F-box-like	PF12937	4 - 39	3.2e-06	F-box-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001757)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24380 FvH4_2g24390 FvH4_2g24391 FvH4_2g24410 FvH4_2g24671 FvH4_2g24690 FvH4_2g24690 FvH4_2g24690 FvH4_2g24700
malus_domestica	MD11G1297700.v1.1
prunus_persica	Prupe.4G274600_v2.0.a1 Prupe.8G252000_v2.0.a1
pyrus_communis	pycom06g03770
rosa_chinensis	RchiOBHm_Chr6g0292521 RchiOBHm_Chr6g0292531
rosa_laevigata	RLG00000012013 RLG00000012014 RLG00000012015 RLG00000012016 RLG00000012017 RLG00000012049
rosa_multiflora	Rmu_sc0001354.1_g000031 Rmu_sc0001354.1_g000032 Rmu_sc0003908.1_g000003
rosa_roxburghii	Rroxscaffold_7G00174980 Rroxscaffold_7G00175290
rosa_rugosa	Rorug06G0224900 Rorug06G0227400 Rorug06G0227500
rosa_samantha	Rh4AG099200 Rh4CG108900 Rh4CG412100 Rh4DG094200 Rh6AG338000 Rh6AG340600 Rh6AG340700 Rh6BG345300 Rh6BG348000 Rh6BG348100 Rh6BG348200 Rh6CG352300 Rh6CG354900 Rh6CG355000 Rh6DG338300 Rh6DG340700 Rh6DG340800
rosa_wichuraiana	Rw6G029670 Rw6G029680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	733
AccB7I	CCANNNNNTGG	1 cut(s)	378
AclWI	GGATC	3 cut(s)	464, 745, 758
AcsI	RAATTY	2 cut(s)	292, 352
AcuI	CTGAAG	3 cut(s)	108, 120, 434
AcyI	GRCGYC	1 cut(s)	730
AfaI	GTAC	3 cut(s)	212, 328, 564
AfiI	CCNNNNNNNGG	2 cut(s)	267, 378
AgsI	TTSAA	2 cut(s)	460, 572
AjnI	CCWGG	2 cut(s)	146, 758
AloI	GAACNNNNNNTCC	2 cut(s)	440, 472
AluBI	AGCT	4 cut(s)	128, 140, 349, 616
AluI	AGCT	4 cut(s)	128, 140, 349, 616
Alw26I	GTCTC	2 cut(s)	721, 778
AlwI	GGATC	3 cut(s)	464, 745, 758
AlwNI	CAGNNNCTG	1 cut(s)	190
Ama87I	CYCGRG	1 cut(s)	617
ApeKI	GCWGC	2 cut(s)	431, 707
ApoI	RAATTY	2 cut(s)	292, 352
AspLEI	GCGC	1 cut(s)	519
AspS9I	GGNCC	1 cut(s)	381
AsuC2I	CCSGG	1 cut(s)	540
AvaI	CYCGRG	1 cut(s)	617
AvaII	GGWCC	1 cut(s)	381
BamHI	GGATCC	1 cut(s)	750
BbsI	GAAGAC	2 cut(s)	215, 422
BbvI	GCAGC	2 cut(s)	418, 694
BccI	CCATC	4 cut(s)	224, 230, 261, 662
BceAI	ACGGC	2 cut(s)	309, 561
BciT130I	CCWGG	2 cut(s)	148, 760
BclI	TGATCA	2 cut(s)	202, 784
BcnI	CCSGG	1 cut(s)	540
BcoDI	GTCTC	2 cut(s)	721, 778
BfoI	RGCGCY	1 cut(s)	520
BisI	GCNGC	2 cut(s)	432, 708
BlsI	GCNGC	2 cut(s)	433, 709
Bme1390I	CCNGG	3 cut(s)	148, 540, 760
Bme18I	GGWCC	1 cut(s)	381
BmeT110I	CYCGRG	1 cut(s)	617
BmgT120I	GGNCC	1 cut(s)	381
BmiI	GGNNCC	2 cut(s)	370, 752
BmrFI	CCNGG	3 cut(s)	148, 540, 760
BmsI	GCATC	2 cut(s)	315, 694
BpiI	GAAGAC	2 cut(s)	215, 422
BpuMI	CCSGG	1 cut(s)	540
Bsa29I	ATCGAT	1 cut(s)	66
BsaHI	GRCGYC	1 cut(s)	730
BsaJI	CCNNGG	3 cut(s)	146, 262, 758
BsaWI	WCCGGW	1 cut(s)	232
Bsc4I	CCNNNNNNNGG	2 cut(s)	267, 378
Bse1I	ACTGG	1 cut(s)	184
BseBI	CCWGG	2 cut(s)	148, 760
BseCI	ATCGAT	1 cut(s)	66
BseDI	CCNNGG	3 cut(s)	146, 262, 758
BseGI	GGATG	4 cut(s)	241, 257, 272, 306
BseLI	CCNNNNNNNGG	2 cut(s)	267, 378
BseMII	CTCAG	2 cut(s)	168, 182
BseNI	ACTGG	1 cut(s)	184
BseRI	GAGGAG	1 cut(s)	276
BseXI	GCAGC	2 cut(s)	418, 694
BshVI	ATCGAT	1 cut(s)	66
BsiHKCI	CYCGRG	1 cut(s)	617
BsiSI	CCGG	2 cut(s)	233, 540
BslFI	GGGAC	1 cut(s)	667
BslI	CCNNNNNNNGG	2 cut(s)	267, 378
BsmAI	GTCTC	2 cut(s)	721, 778
BsmBI	CGTCTC	1 cut(s)	721
BsmFI	GGGAC	1 cut(s)	667
BsoBI	CYCGRG	1 cut(s)	617
Bsp143I	GATC	6 cut(s)	16, 67, 202, 469, 750, 784
BspCNI	CTCAG	2 cut(s)	169, 183
BspDI	ATCGAT	1 cut(s)	66
BspLI	GGNNCC	2 cut(s)	370, 752
BspPI	GGATC	3 cut(s)	464, 745, 758
BsrI	ACTGG	1 cut(s)	184
BssECI	CCNNGG	3 cut(s)	146, 262, 758
BssMI	GATC	6 cut(s)	16, 67, 202, 469, 750, 784
BssNI	GRCGYC	1 cut(s)	730
BssT1I	CCWWGG	1 cut(s)	262
Bst2UI	CCWGG	2 cut(s)	148, 760
Bst4CI	ACNGT	1 cut(s)	159
Bst6I	CTCTTC	1 cut(s)	781
BstACI	GRCGYC	1 cut(s)	730
BstC8I	GCNNGC	1 cut(s)	515
BstDEI	CTNAG	4 cut(s)	55, 177, 191, 501
BstF5I	GGATG	4 cut(s)	241, 257, 272, 306
BstH2I	RGCGCY	1 cut(s)	520
BstHHI	GCGC	1 cut(s)	519
BstKTI	GATC	6 cut(s)	19, 70, 205, 472, 753, 787
BstMAI	GTCTC	2 cut(s)	721, 778
BstMBI	GATC	6 cut(s)	16, 67, 202, 469, 750, 784
BstMWI	GCNNNNNNNGC	1 cut(s)	707
BstNI	CCWGG	2 cut(s)	148, 760
BstSCI	CCNGG	3 cut(s)	146, 538, 758
BstV1I	GCAGC	2 cut(s)	418, 694
BstV2I	GAAGAC	2 cut(s)	215, 422
BstX2I	RGATCY	1 cut(s)	750
BstYI	RGATCY	1 cut(s)	750
Bsu15I	ATCGAT	1 cut(s)	66
BsuTUI	ATCGAT	1 cut(s)	66
BtsCI	GGATG	4 cut(s)	241, 257, 272, 306
BtsI	GCAGTG	1 cut(s)	117
BtsIMutI	CAGTG	2 cut(s)	117, 691
Cac8I	GCNNGC	1 cut(s)	515
CaiI	CAGNNNCTG	1 cut(s)	190
CfoI	GCGC	1 cut(s)	519
Cfr13I	GGNCC	1 cut(s)	381
ClaI	ATCGAT	1 cut(s)	66
Csp6I	GTAC	3 cut(s)	211, 327, 563
CviJI	RGCY	6 cut(s)	128, 140, 324, 349, 371, 616
CviKI_1	RGCY	6 cut(s)	128, 140, 324, 349, 371, 616
CviQI	GTAC	3 cut(s)	211, 327, 563
DdeI	CTNAG	4 cut(s)	55, 177, 191, 501
DpnI	GATC	6 cut(s)	18, 69, 204, 471, 752, 786
DpnII	GATC	6 cut(s)	16, 67, 202, 469, 750, 784
Eam1104I	CTCTTC	1 cut(s)	781
EarI	CTCTTC	1 cut(s)	781
Eco130I	CCWWGG	1 cut(s)	262
Eco47I	GGWCC	1 cut(s)	381
Eco57I	CTGAAG	3 cut(s)	108, 120, 434
Eco88I	CYCGRG	1 cut(s)	617
EcoRI	GAATTC	1 cut(s)	292
EcoRII	CCWGG	2 cut(s)	146, 758
EcoT14I	CCWWGG	1 cut(s)	262
ErhI	CCWWGG	1 cut(s)	262
Esp3I	CGTCTC	1 cut(s)	721
FaiI	YATR	6 cut(s)	37, 162, 207, 530, 554, 581
FaqI	GGGAC	1 cut(s)	667
FbaI	TGATCA	2 cut(s)	202, 784
Fnu4HI	GCNGC	2 cut(s)	432, 708
FokI	GGATG	4 cut(s)	244, 248, 279, 293
Fsp4HI	GCNGC	2 cut(s)	432, 708
GlaI	GCGC	1 cut(s)	518
GluI	GCNGC	2 cut(s)	432, 708
HaeII	RGCGCY	1 cut(s)	520
HapII	CCGG	2 cut(s)	233, 540
HhaI	GCGC	1 cut(s)	519
Hin1I	GRCGYC	1 cut(s)	730
Hin6I	GCGC	1 cut(s)	517
HinP1I	GCGC	1 cut(s)	517
HincII	GTYRAC	1 cut(s)	734
HindII	GTYRAC	1 cut(s)	734
HinfI	GANTC	1 cut(s)	50
HpaII	CCGG	2 cut(s)	233, 540
Hpy166II	GTNNAC	2 cut(s)	213, 734
Hpy188I	TCNGA	5 cut(s)	16, 178, 291, 594, 789
Hpy188III	TCNNGA	3 cut(s)	26, 227, 473
Hpy8I	GTNNAC	2 cut(s)	213, 734
Hpy99I	CGWCG	1 cut(s)	366
HpyCH4III	ACNGT	1 cut(s)	159
HpyCH4IV	ACGT	1 cut(s)	730
HpyCH4V	TGCA	3 cut(s)	47, 93, 306
HpyF10VI	GCNNNNNNNGC	1 cut(s)	707
HpyF3I	CTNAG	4 cut(s)	55, 177, 191, 501
HpySE526I	ACGT	1 cut(s)	730
Hsp92I	GRCGYC	1 cut(s)	730
HspAI	GCGC	1 cut(s)	517
Ksp22I	TGATCA	2 cut(s)	202, 784
Kzo9I	GATC	6 cut(s)	16, 67, 202, 469, 750, 784
LmnI	GCTCC	3 cut(s)	239, 346, 368
Lsp1109I	GCAGC	2 cut(s)	418, 694
LweI	GCATC	2 cut(s)	315, 694
MaeII	ACGT	1 cut(s)	730
MaeIII	GTNAC	2 cut(s)	401, 483
MalI	GATC	6 cut(s)	18, 69, 204, 471, 752, 786
MboI	GATC	6 cut(s)	16, 67, 202, 469, 750, 784
MboII	GAAGA	9 cut(s)	11, 62, 105, 126, 215, 427, 457, 569, 768
MfeI	CAATTG	1 cut(s)	42
MflI	RGATCY	1 cut(s)	750
MluCI	AATT	5 cut(s)	42, 172, 292, 352, 391
MlyI	GAGTC	1 cut(s)	59
MnlI	CCTC	3 cut(s)	33, 297, 439
MseI	TTAA	2 cut(s)	525, 738
MspI	CCGG	2 cut(s)	233, 540
MspR9I	CCNGG	3 cut(s)	148, 540, 760
MunI	CAATTG	1 cut(s)	42
MvaI	CCWGG	2 cut(s)	148, 760
MwoI	GCNNNNNNNGC	1 cut(s)	707
NciI	CCSGG	1 cut(s)	540
NdeII	GATC	6 cut(s)	16, 67, 202, 469, 750, 784
NlaIV	GGNNCC	2 cut(s)	370, 752
NmuCI	GTSAC	1 cut(s)	483
PaeR7I	CTCGAG	1 cut(s)	617
PflMI	CCANNNNNTGG	1 cut(s)	378
PfoI	TCCNGGA	1 cut(s)	538
PkrI	GCNGC	2 cut(s)	433, 709
PleI	GAGTC	1 cut(s)	58
PpsI	GAGTC	1 cut(s)	58
Psp6I	CCWGG	2 cut(s)	146, 758
PspGI	CCWGG	2 cut(s)	146, 758
PspN4I	GGNNCC	2 cut(s)	370, 752
PspPI	GGNCC	1 cut(s)	381
PspXI	VCTCGAGB	1 cut(s)	617
PstNI	CAGNNNCTG	1 cut(s)	190
PsuI	RGATCY	1 cut(s)	750
RsaI	GTAC	3 cut(s)	212, 328, 564
RsaNI	GTAC	3 cut(s)	211, 327, 563
SaqAI	TTAA	2 cut(s)	525, 738
SatI	GCNGC	2 cut(s)	432, 708
Sau3AI	GATC	6 cut(s)	16, 67, 202, 469, 750, 784
Sau96I	GGNCC	1 cut(s)	381
SchI	GAGTC	1 cut(s)	59
ScrFI	CCNGG	3 cut(s)	148, 540, 760
SetI	ASST	9 cut(s)	63, 130, 142, 351, 430, 510, 618, 733, 764
SfaNI	GCATC	2 cut(s)	315, 694
Sfr274I	CTCGAG	1 cut(s)	617
SinI	GGWCC	1 cut(s)	381
SlaI	CTCGAG	1 cut(s)	617
SmlI	CTYRAG	1 cut(s)	617
SmoI	CTYRAG	1 cut(s)	617
Sse9I	AATT	5 cut(s)	42, 172, 292, 352, 391
SspI	AATATT	1 cut(s)	575
StyD4I	CCNGG	3 cut(s)	146, 538, 758
StyI	CCWWGG	1 cut(s)	262
TaaI	ACNGT	1 cut(s)	159
TaiI	ACGT	1 cut(s)	733
TaqI	TCGA	3 cut(s)	66, 468, 618
TasI	AATT	5 cut(s)	42, 172, 292, 352, 391
TatI	WGTACW	1 cut(s)	210
Tru1I	TTAA	2 cut(s)	525, 738
Tru9I	TTAA	2 cut(s)	525, 738
TscAI	CASTG	2 cut(s)	124, 691
TseFI	GTSAC	1 cut(s)	483
TseI	GCWGC	2 cut(s)	431, 707
Tsp45I	GTSAC	1 cut(s)	483
TspDTI	ATGAA	5 cut(s)	246, 270, 354, 390, 568
TspGWI	ACGGA	1 cut(s)	465
TspRI	CASTG	2 cut(s)	124, 691
Van91I	CCANNNNNTGG	1 cut(s)	378
VpaK11BI	GGWCC	1 cut(s)	381
XapI	RAATTY	2 cut(s)	292, 352
XhoI	CTCGAG	1 cut(s)	617
ZraI	GACGTC	1 cut(s)	731

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.