Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001757

Physical Location & Seq

Genomic Coordinates Reverse (-)

36529793 .. 36532672

Gene Structure 2880 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0227400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGCTTTCTCCACCACTGCTGGTATGATAACCGATTCTATTATTGTCTTGCTATGCTGGAACTCTAGGAGTGTGGAGAGTATATCATCATTTGTAGTGTTAGCAAGAACCAGAAGGAAAGTGAATACTACTACAAGGCAAATGGATTTCATGCAGTGTTTGAAAACCATTCCTAAAGTGAATGTTGTCAAGCTTATGGGTCATAAAGAGTGGCTAGCAGAGGTTCAATTTCTTGGTGTGGTAAATCACCCAAATCTGGGCTTTGAACCCTCTTCCTTGGATCATGAGGTTACAAATAATGCTTGGTGCTGCTCAAGGACTGGCTTATCTACACGAGGGACTGGAAGTCCAGGTGATATATATCGAGATTTCAAATCCTCCAACGTGCTCTTGGATGAGGACTTTAAGCCAAAACTCTCAGACTTCGGGCTTGCTAGAGAAGGGCCAAAGGGTGACCGTACTCATGTATCGACAGCAGTGGTAGGGACTTATGGATATGCTACCCCAGAGTATGTTGAAACTGGCCATCTTTCCATCCATAGTGACTTATGGAGTTTTGGTGTGGTGCTGTATGAGATCTTCACTGGGAGGCGTGTCTTAGAAAGACACCGGCCAACAGCAGAGCAGAAGCTTCTTTATTGGTTGTCGTTGCAATTGACACCTTATTGCCACGGAAATTGTTCCGTCGCGATTAAGCCTTATCATTTGCGACGGAAAATCTTTGCCGTAATAATTTTGTGCTCAATTGCGAGTTCTCCACTCGCAGCCCTATCCCCGCCGCCCAGCCTTCCTCCTCTTCTTCTCCTGCAGGACCGCCTGCAACGGCGTCGTCGAGGAGCTCAAGAATTTGACCACTCACTCCCCCACGTGCTTCACGTTTCCGGCGACGGAGGAAGCACCGCCGAGATTCTCTGCGTCCTCGGTAATTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

310

Amino Acids

34.52

Weight (kDa)

8.9

Isoelectric Point (pI)

41.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	120 - 207	1.6e-20	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	120 - 200	1e-16	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001757)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24380 FvH4_2g24390 FvH4_2g24391 FvH4_2g24410 FvH4_2g24671 FvH4_2g24690 FvH4_2g24690 FvH4_2g24690 FvH4_2g24700
malus_domestica	MD11G1297700.v1.1
prunus_persica	Prupe.4G274600_v2.0.a1 Prupe.8G252000_v2.0.a1
pyrus_communis	pycom06g03770
rosa_chinensis	RchiOBHm_Chr6g0292521 RchiOBHm_Chr6g0292531
rosa_laevigata	RLG00000012013 RLG00000012014 RLG00000012015 RLG00000012016 RLG00000012017 RLG00000012049
rosa_multiflora	Rmu_sc0001354.1_g000031 Rmu_sc0001354.1_g000032 Rmu_sc0003908.1_g000003
rosa_roxburghii	Rroxscaffold_7G00174980 Rroxscaffold_7G00175290
rosa_rugosa	Rorug06G0224900 Rorug06G0227400 Rorug06G0227500
rosa_samantha	Rh4AG099200 Rh4CG108900 Rh4CG412100 Rh4DG094200 Rh6AG338000 Rh6AG340600 Rh6AG340700 Rh6BG345300 Rh6BG348000 Rh6BG348100 Rh6BG348200 Rh6CG352300 Rh6CG354900 Rh6CG355000 Rh6DG338300 Rh6DG340700 Rh6DG340800
rosa_wichuraiana	Rw6G029670 Rw6G029680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	689
AciI	CCGC	4 cut(s)	776, 779, 814, 900
AclWI	GGATC	1 cut(s)	288
AcoI	YGGCCR	2 cut(s)	523, 611
AcsI	RAATTY	1 cut(s)	845
AcvI	CACGTG	1 cut(s)	868
AcyI	GRCGYC	1 cut(s)	826
AfaI	GTAC	1 cut(s)	460
AfiI	CCNNNNNNNGG	2 cut(s)	256, 257
AgsI	TTSAA	5 cut(s)	163, 227, 266, 373, 518
AhdI	GACNNNNNGTC	1 cut(s)	345
AjnI	CCWGG	1 cut(s)	349
AluBI	AGCT	3 cut(s)	193, 631, 839
AluI	AGCT	3 cut(s)	193, 631, 839
Alw21I	GWGCWC	3 cut(s)	390, 743, 841
AlwI	GGATC	1 cut(s)	288
AoxI	GGCC	3 cut(s)	443, 523, 611
ApeKI	GCWGC	2 cut(s)	309, 764
ApoI	RAATTY	1 cut(s)	845
Asp700I	GAANNNNTTC	1 cut(s)	679
AspS9I	GGNCC	2 cut(s)	443, 811
AsuHPI	GGTGA	3 cut(s)	239, 365, 464
AsuNHI	GCTAGC	1 cut(s)	214
AvaII	GGWCC	1 cut(s)	811
BaeI	ACNNNNGTAYC	2 cut(s)	450, 483
BalI	TGGCCA	1 cut(s)	525
BanII	GRGCYC	1 cut(s)	841
BarI	GAAGNNNNNNTAC	2 cut(s)	563, 595
BauI	CACGAG	1 cut(s)	333
BbrPI	CACGTG	1 cut(s)	868
Bbv12I	GWGCWC	3 cut(s)	390, 743, 841
BbvI	GCAGC	2 cut(s)	296, 776
BccI	CCATC	2 cut(s)	534, 542
BceAI	ACGGC	2 cut(s)	710, 839
BcgI	CGANNNNNNTGC	2 cut(s)	809, 843
BciT130I	CCWGG	1 cut(s)	351
BfaI	CTAG	4 cut(s)	66, 215, 435, 931
BfmI	CTRYAG	1 cut(s)	806
BglII	AGATCT	1 cut(s)	576
BisI	GCNGC	3 cut(s)	310, 765, 779
BlsI	GCNGC	3 cut(s)	311, 766, 780
Bme1390I	CCNGG	1 cut(s)	351
Bme18I	GGWCC	1 cut(s)	811
BmeRI	GACNNNNNGTC	1 cut(s)	345
BmgT120I	GGNCC	2 cut(s)	443, 811
BmrFI	CCNGG	1 cut(s)	351
BmrI	ACTGGG	1 cut(s)	594
BmtI	GCTAGC	1 cut(s)	218
BmuI	ACTGGG	1 cut(s)	594
BpuEI	CTTGAG	2 cut(s)	298, 825
BsaAI	YACGTR	1 cut(s)	868
BsaBI	GATNNNNATC	1 cut(s)	360
BsaHI	GRCGYC	1 cut(s)	826
BsaJI	CCNNGG	3 cut(s)	276, 670, 919
BsaXI	ACNNNNNCTCC	2 cut(s)	544, 574
Bsc4I	CCNNNNNNNGG	2 cut(s)	256, 257
Bse118I	RCCGGY	1 cut(s)	609
Bse1I	ACTGG	4 cut(s)	325, 346, 526, 589
Bse8I	GATNNNNATC	1 cut(s)	360
BseBI	CCWGG	1 cut(s)	351
BseDI	CCNNGG	3 cut(s)	276, 670, 919
BseGI	GGATG	2 cut(s)	400, 534
BseJI	GATNNNNATC	1 cut(s)	360
BseLI	CCNNNNNNNGG	2 cut(s)	256, 257
BseMII	CTCAG	1 cut(s)	432
BseNI	ACTGG	4 cut(s)	325, 346, 526, 589
BseRI	GAGGAG	2 cut(s)	783, 849
BseXI	GCAGC	2 cut(s)	296, 776
BseYI	CCCAGC	1 cut(s)	782
Bsh1236I	CGCG	1 cut(s)	689
BshFI	GGCC	3 cut(s)	445, 525, 613
BsiHKAI	GWGCWC	3 cut(s)	390, 743, 841
BsiSI	CCGG	2 cut(s)	610, 882
BslFI	GGGAC	2 cut(s)	352, 499
BslI	CCNNNNNNNGG	2 cut(s)	256, 257
BsmFI	GGGAC	2 cut(s)	352, 499
BsnI	GGCC	3 cut(s)	445, 525, 613
Bsp1286I	GDGCHC	3 cut(s)	390, 743, 841
Bsp143I	GATC	2 cut(s)	280, 576
Bsp68I	TCGCGA	1 cut(s)	689
BspACI	CCGC	4 cut(s)	776, 779, 814, 900
BspANI	GGCC	3 cut(s)	445, 525, 613
BspCNI	CTCAG	1 cut(s)	431
BspFNI	CGCG	1 cut(s)	689
BspHI	TCATGA	1 cut(s)	283
BspMAI	CTGCAG	1 cut(s)	810
BspOI	GCTAGC	1 cut(s)	218
BspPI	GGATC	1 cut(s)	288
BsrFI	RCCGGY	1 cut(s)	609
BsrI	ACTGG	4 cut(s)	325, 346, 526, 589
BssAI	RCCGGY	1 cut(s)	609
BssECI	CCNNGG	3 cut(s)	276, 670, 919
BssMI	GATC	2 cut(s)	280, 576
BssNI	GRCGYC	1 cut(s)	826
BssSI	CACGAG	1 cut(s)	333
BssT1I	CCWWGG	1 cut(s)	276
Bst2BI	CACGAG	1 cut(s)	333
Bst2UI	CCWGG	1 cut(s)	351
Bst4CI	ACNGT	1 cut(s)	458
Bst6I	CTCTTC	2 cut(s)	277, 801
BstACI	GRCGYC	1 cut(s)	826
BstBAI	YACGTR	1 cut(s)	868
BstC8I	GCNNGC	3 cut(s)	216, 432, 818
BstDEI	CTNAG	2 cut(s)	418, 598
BstDSI	CCRYGG	1 cut(s)	670
BstEII	GGTNACC	1 cut(s)	452
BstF5I	GGATG	2 cut(s)	400, 534
BstFNI	CGCG	1 cut(s)	689
BstKTI	GATC	2 cut(s)	283, 579
BstMBI	GATC	2 cut(s)	280, 576
BstNI	CCWGG	1 cut(s)	351
BstPI	GGTNACC	1 cut(s)	452
BstSCI	CCNGG	1 cut(s)	349
BstSFI	CTRYAG	1 cut(s)	806
BstUI	CGCG	1 cut(s)	689
BstV1I	GCAGC	2 cut(s)	296, 776
BstX2I	RGATCY	1 cut(s)	576
BstYI	RGATCY	1 cut(s)	576
BsuRI	GGCC	3 cut(s)	445, 525, 613
BtgI	CCRYGG	1 cut(s)	670
BtsCI	GGATG	2 cut(s)	400, 534
BtsI	GCAGTG	3 cut(s)	15, 161, 483
BtsIMutI	CAGTG	4 cut(s)	15, 161, 483, 582
BtuMI	TCGCGA	1 cut(s)	689
Cac8I	GCNNGC	3 cut(s)	216, 432, 818
CciI	TCATGA	1 cut(s)	283
Cfr10I	RCCGGY	1 cut(s)	609
Cfr13I	GGNCC	2 cut(s)	443, 811
CseI	GACGC	2 cut(s)	815, 904
Csp6I	GTAC	1 cut(s)	459
CspCI	CAANNNNNGTGG	2 cut(s)	659, 694
CviAII	CATG	3 cut(s)	151, 284, 464
CviQI	GTAC	1 cut(s)	459
DdeI	CTNAG	2 cut(s)	418, 598
DpnI	GATC	2 cut(s)	282, 578
DpnII	GATC	2 cut(s)	280, 576
DriI	GACNNNNNGTC	1 cut(s)	345
EaeI	YGGCCR	2 cut(s)	523, 611
Eam1104I	CTCTTC	2 cut(s)	277, 801
Eam1105I	GACNNNNNGTC	1 cut(s)	345
EarI	CTCTTC	2 cut(s)	277, 801
Ecl136II	GAGCTC	1 cut(s)	839
Eco130I	CCWWGG	1 cut(s)	276
Eco24I	GRGCYC	1 cut(s)	841
Eco47I	GGWCC	1 cut(s)	811
Eco53kI	GAGCTC	1 cut(s)	839
Eco72I	CACGTG	1 cut(s)	868
Eco91I	GGTNACC	1 cut(s)	452
EcoICRI	GAGCTC	1 cut(s)	839
EcoO65I	GGTNACC	1 cut(s)	452
EcoRII	CCWGG	1 cut(s)	349
EcoT14I	CCWWGG	1 cut(s)	276
EcoT38I	GRGCYC	1 cut(s)	841
ErhI	CCWWGG	1 cut(s)	276
FaeI	CATG	3 cut(s)	154, 287, 467
FaqI	GGGAC	2 cut(s)	352, 499
FatI	CATG	3 cut(s)	150, 283, 463
FauI	CCCGC	1 cut(s)	783
Fnu4HI	GCNGC	3 cut(s)	310, 765, 779
FokI	GGATG	2 cut(s)	407, 521
FriOI	GRGCYC	1 cut(s)	841
Fsp4HI	GCNGC	3 cut(s)	310, 765, 779
FspBI	CTAG	4 cut(s)	66, 215, 435, 931
GluI	GCNGC	3 cut(s)	310, 765, 779
GsaI	CCCAGC	1 cut(s)	786
HaeIII	GGCC	3 cut(s)	445, 525, 613
HapII	CCGG	2 cut(s)	610, 882
HgaI	GACGC	2 cut(s)	815, 904
Hin1I	GRCGYC	1 cut(s)	826
Hin1II	CATG	3 cut(s)	154, 287, 467
HindIII	AAGCTT	2 cut(s)	191, 629
HinfI	GANTC	2 cut(s)	35, 907
HpaII	CCGG	2 cut(s)	610, 882
HphI	GGTGA	3 cut(s)	239, 365, 464
Hpy188I	TCNGA	1 cut(s)	421
Hpy188III	TCNNGA	4 cut(s)	284, 365, 688, 842
Hpy99I	CGWCG	5 cut(s)	689, 714, 831, 834, 890
HpyAV	CCTTC	3 cut(s)	108, 434, 797
HpyCH4III	ACNGT	1 cut(s)	458
HpyCH4IV	ACGT	3 cut(s)	384, 867, 876
HpyCH4V	TGCA	4 cut(s)	154, 652, 808, 820
HpyF3I	CTNAG	2 cut(s)	418, 598
HpySE526I	ACGT	3 cut(s)	384, 867, 876
Hsp92I	GRCGYC	1 cut(s)	826
Hsp92II	CATG	3 cut(s)	154, 287, 467
Kzo9I	GATC	2 cut(s)	280, 576
LmnI	GCTCC	1 cut(s)	836
Lsp1109I	GCAGC	2 cut(s)	296, 776
MaeI	CTAG	4 cut(s)	66, 215, 435, 931
MaeII	ACGT	3 cut(s)	384, 867, 876
MaeIII	GTNAC	3 cut(s)	289, 452, 542
MalI	GATC	2 cut(s)	282, 578
MboI	GATC	2 cut(s)	280, 576
MboII	GAAGA	4 cut(s)	264, 571, 788, 791
MfeI	CAATTG	2 cut(s)	653, 744
MflI	RGATCY	1 cut(s)	576
MhlI	GDGCHC	3 cut(s)	390, 743, 841
MlsI	TGGCCA	1 cut(s)	525
MluCI	AATT	7 cut(s)	227, 653, 676, 732, 744, 845, 925
MluNI	TGGCCA	1 cut(s)	525
MmeI	TCCRAC	1 cut(s)	405
Mox20I	TGGCCA	1 cut(s)	525
MroXI	GAANNNNTTC	1 cut(s)	679
MscI	TGGCCA	1 cut(s)	525
MseI	TTAA	2 cut(s)	405, 693
Msp20I	TGGCCA	1 cut(s)	525
MspI	CCGG	2 cut(s)	610, 882
MspR9I	CCNGG	1 cut(s)	351
MunI	CAATTG	2 cut(s)	653, 744
MvaI	CCWGG	1 cut(s)	351
MvnI	CGCG	1 cut(s)	689
NdeII	GATC	2 cut(s)	280, 576
NheI	GCTAGC	1 cut(s)	214
NlaIII	CATG	3 cut(s)	154, 287, 467
NmeAIII	GCCGAG	1 cut(s)	928
NmuCI	GTSAC	2 cut(s)	452, 542
NruI	TCGCGA	1 cut(s)	689
PagI	TCATGA	1 cut(s)	283
PcsI	WCGNNNNNNNCGW	3 cut(s)	829, 873, 882
PdmI	GAANNNNTTC	1 cut(s)	679
PfeI	GAWTC	2 cut(s)	35, 907
PkrI	GCNGC	3 cut(s)	311, 766, 780
PmaCI	CACGTG	1 cut(s)	868
PmlI	CACGTG	1 cut(s)	868
Ppu21I	YACGTR	1 cut(s)	868
Psp124BI	GAGCTC	1 cut(s)	841
Psp6I	CCWGG	1 cut(s)	349
PspCI	CACGTG	1 cut(s)	868
PspEI	GGTNACC	1 cut(s)	452
PspFI	CCCAGC	1 cut(s)	782
PspGI	CCWGG	1 cut(s)	349
PspPI	GGNCC	2 cut(s)	443, 811
PstI	CTGCAG	1 cut(s)	810
PsuI	RGATCY	1 cut(s)	576
RruI	TCGCGA	1 cut(s)	689
RsaI	GTAC	1 cut(s)	460
RsaNI	GTAC	1 cut(s)	459
SacI	GAGCTC	1 cut(s)	841
SaqAI	TTAA	2 cut(s)	405, 693
SatI	GCNGC	3 cut(s)	310, 765, 779
Sau3AI	GATC	2 cut(s)	280, 576
Sau96I	GGNCC	2 cut(s)	443, 811
SbfI	CCTGCAGG	1 cut(s)	810
ScrFI	CCNGG	1 cut(s)	351
SdaI	CCTGCAGG	1 cut(s)	810
SduI	GDGCHC	3 cut(s)	390, 743, 841
SfcI	CTRYAG	1 cut(s)	806
SinI	GGWCC	1 cut(s)	811
SmlI	CTYRAG	2 cut(s)	313, 840
SmoI	CTYRAG	2 cut(s)	313, 840
Sse8387I	CCTGCAGG	1 cut(s)	810
Sse9I	AATT	7 cut(s)	227, 653, 676, 732, 744, 845, 925
SsiI	CCGC	4 cut(s)	776, 779, 814, 900
SspMI	CTAG	4 cut(s)	66, 215, 435, 931
SstI	GAGCTC	1 cut(s)	841
StyD4I	CCNGG	1 cut(s)	349
StyI	CCWWGG	1 cut(s)	276
TaaI	ACNGT	1 cut(s)	458
TaiI	ACGT	3 cut(s)	387, 870, 879
TaqI	TCGA	3 cut(s)	364, 470, 832
TasI	AATT	7 cut(s)	227, 653, 676, 732, 744, 845, 925
TauI	GCSGC	1 cut(s)	781
TfiI	GAWTC	2 cut(s)	35, 907
Tru1I	TTAA	2 cut(s)	405, 693
Tru9I	TTAA	2 cut(s)	405, 693
TscAI	CASTG	4 cut(s)	22, 161, 483, 589
TseFI	GTSAC	2 cut(s)	452, 542
TseI	GCWGC	2 cut(s)	309, 764
Tsp45I	GTSAC	2 cut(s)	452, 542
TspDTI	ATGAA	1 cut(s)	139
TspGWI	ACGGA	4 cut(s)	673, 687, 727, 903
TspRI	CASTG	4 cut(s)	22, 161, 483, 589
VpaK11BI	GGWCC	1 cut(s)	811
XapI	RAATTY	1 cut(s)	845
XcmI	CCANNNNNNNNNTGG	1 cut(s)	388
XmnI	GAANNNNTTC	1 cut(s)	679
XspI	CTAG	4 cut(s)	66, 215, 435, 931

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.