RchiOBHm_Chr6g0292531

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0001757
Physical Location & Seq
Forward (+)
55390921 .. 55391518
598 bp
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UTR
Exon/CDS
Intron
PRQ26251

Sequence Viewer

Length: 549 bp
ATGTTTCTTACGACACACATTTTGTGTGCCACAAGAGAAATTTGTCTGTTACAATACGCTTTTTTGTGTAGTAAAGTTTGCAATAATGATGAATGGGAGCTGAATTTACTTCGTCGGGGAGCCAATGAATGGACCAAACGTAATTATTCTGGTTACTCAAAACTGAAGACAATCAAAGGTGCTGCTTATCACAAAGAGGACGAAGAGTTCAACTTTTTCGATCCAGATGACAAGTCACTCACATTTTCTACTAAGAACCTACGCTGGCGCTATTTTAACATAATCTCTCCCGGGACAGCGGATATAGAAGAAGTACCATTTAAATATTTCATAAATTATTCTCAGAGAGAGAAGTTGAAGGATAAGCTCGAGTTGGTAGAGAATGTTTCACTTTCTACTTGTGGGACACAGATGACTGTTGGCACACTTGTTTTCAGTGAGAGCATTACTGCTGATGCTGCTGACGACCAATCCAAGAGACATCAACTTAAAGGGGTTTGGATCCACCCCAGGTTCTACCAAGTCTCTTCTAATGATCAGAGTTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

182

Amino Acids

21.28

Weight (kDa)

6.43

Isoelectric Point (pI)

43.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 129
AciI CCGC 1 cut(s) 299
AclWI GGATC 3 cut(s) 215, 496, 509
AcsI RAATTY 2 cut(s) 39, 103
AcuI CTGAAG 1 cut(s) 185
AfaI GTAC 1 cut(s) 315
AfiI CCNNNNNNNGG 1 cut(s) 129
AgsI TTSAA 2 cut(s) 211, 358
AjnI CCWGG 1 cut(s) 509
AloI GAACNNNNNNTCC 2 cut(s) 191, 223
AluBI AGCT 2 cut(s) 100, 367
AluI AGCT 2 cut(s) 100, 367
Alw26I GTCTC 2 cut(s) 472, 529
AlwI GGATC 3 cut(s) 215, 496, 509
Ama87I CYCGRG 2 cut(s) 290, 368
ApeKI GCWGC 2 cut(s) 182, 458
ApoI RAATTY 2 cut(s) 39, 103
ArsI GACNNNNNNTTYG 1 cut(s) 36
AspLEI GCGC 1 cut(s) 270
AspS9I GGNCC 1 cut(s) 132
AsuC2I CCSGG 2 cut(s) 291, 292
AvaI CYCGRG 2 cut(s) 290, 368
AvaII GGWCC 1 cut(s) 132
BamHI GGATCC 1 cut(s) 501
BbsI GAAGAC 1 cut(s) 173
BbvI GCAGC 2 cut(s) 169, 445
BciT130I CCWGG 1 cut(s) 511
BclI TGATCA 1 cut(s) 535
BcnI CCSGG 2 cut(s) 291, 292
BcoDI GTCTC 2 cut(s) 472, 529
BfoI RGCGCY 1 cut(s) 271
BisI GCNGC 2 cut(s) 183, 459
BlsI GCNGC 2 cut(s) 184, 460
Bme1390I CCNGG 3 cut(s) 291, 292, 511
Bme18I GGWCC 1 cut(s) 132
BmeT110I CYCGRG 2 cut(s) 290, 368
BmgT120I GGNCC 1 cut(s) 132
BmiI GGNNCC 2 cut(s) 121, 503
BmrFI CCNGG 3 cut(s) 291, 292, 511
BmsI GCATC 1 cut(s) 445
BpiI GAAGAC 1 cut(s) 173
BpuMI CCSGG 2 cut(s) 291, 292
BsaJI CCNNGG 2 cut(s) 290, 509
Bsc4I CCNNNNNNNGG 1 cut(s) 129
BseBI CCWGG 1 cut(s) 511
BseDI CCNNGG 2 cut(s) 290, 509
BseLI CCNNNNNNNGG 1 cut(s) 129
BseMII CTCAG 1 cut(s) 356
BseXI GCAGC 2 cut(s) 169, 445
BsiHKCI CYCGRG 2 cut(s) 290, 368
BsiSI CCGG 1 cut(s) 291
BslFI GGGAC 2 cut(s) 307, 418
BslI CCNNNNNNNGG 1 cut(s) 129
BsmAI GTCTC 2 cut(s) 472, 529
BsmFI GGGAC 2 cut(s) 307, 418
BsoBI CYCGRG 2 cut(s) 290, 368
Bsp143I GATC 3 cut(s) 220, 501, 535
BspACI CCGC 1 cut(s) 299
BspCNI CTCAG 1 cut(s) 355
BspLI GGNNCC 2 cut(s) 121, 503
BspPI GGATC 3 cut(s) 215, 496, 509
BssECI CCNNGG 2 cut(s) 290, 509
BssMI GATC 3 cut(s) 220, 501, 535
Bst2UI CCWGG 1 cut(s) 511
Bst4CI ACNGT 1 cut(s) 418
Bst6I CTCTTC 2 cut(s) 198, 532
BstC8I GCNNGC 1 cut(s) 266
BstDEI CTNAG 2 cut(s) 252, 342
BstH2I RGCGCY 1 cut(s) 271
BstHHI GCGC 1 cut(s) 270
BstKTI GATC 3 cut(s) 223, 504, 538
BstMAI GTCTC 2 cut(s) 472, 529
BstMBI GATC 3 cut(s) 220, 501, 535
BstMWI GCNNNNNNNGC 1 cut(s) 458
BstNI CCWGG 1 cut(s) 511
BstSCI CCNGG 3 cut(s) 289, 290, 509
BstV1I GCAGC 2 cut(s) 169, 445
BstV2I GAAGAC 1 cut(s) 173
BstX2I RGATCY 1 cut(s) 501
BstYI RGATCY 1 cut(s) 501
BtsIMutI CAGTG 1 cut(s) 442
Cac8I GCNNGC 1 cut(s) 266
CfoI GCGC 1 cut(s) 270
Cfr13I GGNCC 1 cut(s) 132
Cfr9I CCCGGG 1 cut(s) 290
Csp6I GTAC 1 cut(s) 314
CviJI RGCY 3 cut(s) 100, 122, 367
CviKI_1 RGCY 3 cut(s) 100, 122, 367
CviQI GTAC 1 cut(s) 314
DdeI CTNAG 2 cut(s) 252, 342
DpnI GATC 3 cut(s) 222, 503, 537
DpnII GATC 3 cut(s) 220, 501, 535
DraI TTTAAA 1 cut(s) 322
Eam1104I CTCTTC 2 cut(s) 198, 532
EarI CTCTTC 2 cut(s) 198, 532
Eco47I GGWCC 1 cut(s) 132
Eco57I CTGAAG 1 cut(s) 185
Eco88I CYCGRG 2 cut(s) 290, 368
EcoRII CCWGG 1 cut(s) 509
FaiI YATR 3 cut(s) 281, 305, 332
FaqI GGGAC 2 cut(s) 307, 418
FbaI TGATCA 1 cut(s) 535
Fnu4HI GCNGC 2 cut(s) 183, 459
Fsp4HI GCNGC 2 cut(s) 183, 459
GlaI GCGC 1 cut(s) 269
GluI GCNGC 2 cut(s) 183, 459
HaeII RGCGCY 1 cut(s) 271
HapII CCGG 1 cut(s) 291
HhaI GCGC 1 cut(s) 270
Hin6I GCGC 1 cut(s) 268
HinP1I GCGC 1 cut(s) 268
HpaII CCGG 1 cut(s) 291
Hpy188I TCNGA 2 cut(s) 345, 540
Hpy188III TCNNGA 1 cut(s) 224
Hpy99I CGWCG 1 cut(s) 117
HpyAV CCTTC 1 cut(s) 352
HpyCH4III ACNGT 1 cut(s) 418
HpyCH4IV ACGT 1 cut(s) 139
HpyCH4V TGCA 1 cut(s) 81
HpyF10VI GCNNNNNNNGC 1 cut(s) 458
HpyF3I CTNAG 2 cut(s) 252, 342
HpySE526I ACGT 1 cut(s) 139
HspAI GCGC 1 cut(s) 268
Ksp22I TGATCA 1 cut(s) 535
Kzo9I GATC 3 cut(s) 220, 501, 535
LmnI GCTCC 2 cut(s) 97, 119
LpnPI CCDG 6 cut(s) 135, 237, 250, 304, 496, 523
Lsp1109I GCAGC 2 cut(s) 169, 445
LweI GCATC 1 cut(s) 445
MaeII ACGT 1 cut(s) 139
MaeIII GTNAC 3 cut(s) 48, 152, 234
MalI GATC 3 cut(s) 222, 503, 537
MboI GATC 3 cut(s) 220, 501, 535
MboII GAAGA 4 cut(s) 178, 215, 320, 519
MflI RGATCY 1 cut(s) 501
MluCI AATT 4 cut(s) 39, 103, 142, 334
MnlI CCTC 1 cut(s) 190
MseI TTAA 3 cut(s) 276, 321, 489
MspA1I CMGCKG 1 cut(s) 299
MspI CCGG 1 cut(s) 291
MspR9I CCNGG 3 cut(s) 291, 292, 511
MvaI CCWGG 1 cut(s) 511
MwoI GCNNNNNNNGC 1 cut(s) 458
NciI CCSGG 2 cut(s) 291, 292
NdeII GATC 3 cut(s) 220, 501, 535
NlaIV GGNNCC 2 cut(s) 121, 503
NmuCI GTSAC 1 cut(s) 234
PaeR7I CTCGAG 1 cut(s) 368
PflMI CCANNNNNTGG 1 cut(s) 129
PkrI GCNGC 2 cut(s) 184, 460
Psp6I CCWGG 1 cut(s) 509
PspGI CCWGG 1 cut(s) 509
PspN4I GGNNCC 2 cut(s) 121, 503
PspPI GGNCC 1 cut(s) 132
PspXI VCTCGAGB 1 cut(s) 368
PsuI RGATCY 1 cut(s) 501
RsaI GTAC 1 cut(s) 315
RsaNI GTAC 1 cut(s) 314
SaqAI TTAA 3 cut(s) 276, 321, 489
SatI GCNGC 2 cut(s) 183, 459
Sau3AI GATC 3 cut(s) 220, 501, 535
Sau96I GGNCC 1 cut(s) 132
ScrFI CCNGG 3 cut(s) 291, 292, 511
SetI ASST 6 cut(s) 102, 142, 181, 261, 369, 515
SfaNI GCATC 1 cut(s) 445
Sfr274I CTCGAG 1 cut(s) 368
SinI GGWCC 1 cut(s) 132
SlaI CTCGAG 1 cut(s) 368
SmaI CCCGGG 1 cut(s) 292
SmiI ATTTAAAT 1 cut(s) 322
SmlI CTYRAG 1 cut(s) 368
SmoI CTYRAG 1 cut(s) 368
Sse9I AATT 4 cut(s) 39, 103, 142, 334
SsiI CCGC 1 cut(s) 299
SspI AATATT 1 cut(s) 326
StyD4I CCNGG 3 cut(s) 289, 290, 509
SwaI ATTTAAAT 1 cut(s) 322
TaaI ACNGT 1 cut(s) 418
TaiI ACGT 1 cut(s) 142
TaqI TCGA 2 cut(s) 219, 369
TasI AATT 4 cut(s) 39, 103, 142, 334
Tru1I TTAA 3 cut(s) 276, 321, 489
Tru9I TTAA 3 cut(s) 276, 321, 489
TscAI CASTG 1 cut(s) 442
TseFI GTSAC 1 cut(s) 234
TseI GCWGC 2 cut(s) 182, 458
Tsp45I GTSAC 1 cut(s) 234
TspDTI ATGAA 3 cut(s) 105, 141, 319
TspMI CCCGGG 1 cut(s) 290
TspRI CASTG 1 cut(s) 442
Van91I CCANNNNNTGG 1 cut(s) 129
VpaK11BI GGWCC 1 cut(s) 132
XapI RAATTY 2 cut(s) 39, 103
XhoI CTCGAG 1 cut(s) 368
XmaI CCCGGG 1 cut(s) 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.