Rh6BG348100

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0001757
Physical Location & Seq
Forward (+)
57850049 .. 57859459
9411 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG348100.1

Sequence Viewer

Length: 1302 bp
ATGAGGCGAAGGCAATGGTCTTATCTTCCTCCTGAACTTATCACAGACGTAGCAGAACGTCTAGGCCTACTCGAGGTTGTGAGGTTCCGCAGCATATGCCAGGCTTGGAACTCTGCTTCTTCTACAATTTCAGCTAAAATTGAATCTTTACTAAACTATAATCCTTGGTTTCTACATTATGGGTATGATTCTGCCCAATGTCAGTTGGTAACTACTGAAAGTGGTAACATTACCATGAATCTTCCGCAACTGGATCAAACTACAACTTGCATTGCATCTTATGAAGGATGGCTTCTTGTATTTAAACAAGGCGGATCAATGTTCTTCTTTCGTCCCTTCTCAAAAACAAAGATAGACCTTCCCAATTTCCCAGTCTCAGAACTCACTGACCATGTTGCAGCATTTTCATCTCCTCCCACATCTCCTGACTGCACAGTTTGTGTCATCAACCGCAGTCCTAGCAATGACAATGAGTTGGAGCTTAATCTACTTTGTCGCGGAGGAGGCAATGGATGGATCCAACACAAGCTTGACTGTCCGCGATTCTCCATTGATACAATCAAATGTGCTGCTTATAGCAAACTAGGAGAATTCTCCTTTTTGGACCATAGCGATAACAAACTCAAGTTATCAGTTACAGACAGCAGAGAAATTTGCTGGAAGAATAATAAAGTAGTTGAGGCGAAAGATAACTTACCAGGAAATTTTTATTATCAGATGGAATATTTCAAGAAAACTGACATGATGAACAAGCTGGGGTTAGCAGATCTTCATGAGGATGTTTCGTTTTCTGTTTGCGGAACACAAACAGAGTATAATGGTACCGACTATTTTATATATAACGAGATTTATAGTATCAGTAATCATCATGAAGAGTCCAATAGCCCGCGGAAATTCAAAGGGGTATGGATCTACCCGAGATTCTATCAAATCTCTCCAAGAGAGCAGAATTTGAGAGAGAGACTTACTGAGACTTTCGAGCCCTCAGCTGGATTGTTGCTGGGCTTCGATAGTTCGATTGGGTTCGAGACTTCGAGGCTTCGACTGGGATCGACTGGGTTTGAGACTTCTAGGCTTCGATTGGGATCGAATGGGATCGACTGGGTTCGAAGAACTGAGTTCTTGGGGATGGCTGCGAATCGACTAGGTTCGAAGAACTGGGAACCGAGGTCTCGAGGATGGCTGCGAATCGACTGGGTTCGAACTTCGAAGAACTTAGGTCTCGGGGATGGTTGCGAATCGACTGGGAAGAACTGGGAATTGAGGTCTCGGGGATGGGGTTCGAAGAAAGTTTGCGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

433

Amino Acids

49.5

Weight (kDa)

7.91

Isoelectric Point (pI)

45.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 78 - 204 9.4e-13 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 821
AccB1I GGYRCC 1 cut(s) 821
AccII CGCG 3 cut(s) 498, 541, 889
AciI CCGC 9 cut(s) 88, 245, 312, 451, 498, 539, 798, 887, 889
AclWI GGATC 8 cut(s) 261, 322, 511, 524, 917, 1057, 1093, 1103
AcsI RAATTY 5 cut(s) 590, 651, 703, 893, 949
AfaI GTAC 1 cut(s) 823
AfiI CCNNNNNNNGG 2 cut(s) 73, 989
AgsI TTSAA 3 cut(s) 143, 730, 898
AjnI CCWGG 2 cut(s) 99, 697
AluBI AGCT 5 cut(s) 134, 481, 529, 754, 989
AluI AGCT 5 cut(s) 134, 481, 529, 754, 989
Alw26I GTCTC 8 cut(s) 379, 955, 965, 1022, 1058, 1176, 1226, 1272
AlwI GGATC 8 cut(s) 261, 322, 511, 524, 917, 1057, 1093, 1103
Ama87I CYCGRG 5 cut(s) 71, 916, 1173, 1223, 1269
AoxI GGCC 1 cut(s) 64
ApeKI GCWGC 5 cut(s) 90, 398, 569, 1133, 1183
ApoI RAATTY 5 cut(s) 590, 651, 703, 893, 949
Asp718I GGTACC 1 cut(s) 821
AspS9I GGNCC 1 cut(s) 604
AsuII TTCGAA 5 cut(s) 1108, 1151, 1201, 1208, 1283
AvaI CYCGRG 5 cut(s) 71, 916, 1173, 1223, 1269
AvaII GGWCC 1 cut(s) 604
BamHI GGATCC 1 cut(s) 516
BanI GGYRCC 1 cut(s) 821
BanII GRGCYC 1 cut(s) 984
BbvCI CCTCAGC 1 cut(s) 985
BbvI GCAGC 5 cut(s) 102, 410, 556, 1120, 1170
BccI CCATC 7 cut(s) 282, 507, 712, 1123, 1173, 1223, 1269
BciT130I CCWGG 2 cut(s) 101, 699
BcoDI GTCTC 8 cut(s) 379, 955, 965, 1022, 1058, 1176, 1226, 1272
BfaI CTAG 5 cut(s) 62, 459, 584, 1071, 1145
BglII AGATCT 1 cut(s) 766
BisI GCNGC 5 cut(s) 91, 399, 570, 1134, 1184
BlsI GCNGC 5 cut(s) 92, 400, 571, 1135, 1185
Bme1390I CCNGG 2 cut(s) 101, 699
Bme18I GGWCC 1 cut(s) 604
BmeT110I CYCGRG 5 cut(s) 71, 916, 1173, 1223, 1269
BmgT120I GGNCC 1 cut(s) 604
BmiI GGNNCC 4 cut(s) 86, 518, 823, 1164
BmrFI CCNGG 2 cut(s) 101, 699
BmrI ACTGGG 8 cut(s) 365, 1055, 1065, 1111, 1168, 1204, 1254, 1264
BmsI GCATC 1 cut(s) 284
BmuI ACTGGG 8 cut(s) 365, 1055, 1065, 1111, 1168, 1204, 1254, 1264
Bpu10I CCTNAGC 1 cut(s) 985
Bpu14I TTCGAA 5 cut(s) 1108, 1151, 1201, 1208, 1283
BpuEI CTTGAG 1 cut(s) 608
BsaBI GATNNNNATC 1 cut(s) 1084
BsaI GGTCTC 3 cut(s) 1176, 1226, 1272
BsaJI CCNNGG 3 cut(s) 164, 887, 1166
Bsc4I CCNNNNNNNGG 2 cut(s) 73, 989
Bse1I ACTGG 9 cut(s) 255, 371, 1050, 1060, 1106, 1163, 1199, 1249, 1259
Bse3DI GCAATG 4 cut(s) 20, 270, 469, 514
Bse8I GATNNNNATC 1 cut(s) 1084
BseBI CCWGG 2 cut(s) 101, 699
BseDI CCNNGG 3 cut(s) 164, 887, 1166
BseGI GGATG 7 cut(s) 293, 518, 784, 1134, 1184, 1234, 1280
BseJI GATNNNNATC 1 cut(s) 1084
BseLI CCNNNNNNNGG 2 cut(s) 73, 989
BseMI GCAATG 4 cut(s) 20, 270, 469, 514
BseMII CTCAG 4 cut(s) 390, 960, 999, 1107
BseNI ACTGG 9 cut(s) 255, 371, 1050, 1060, 1106, 1163, 1199, 1249, 1259
BseRI GAGGAG 2 cut(s) 402, 516
BseXI GCAGC 5 cut(s) 102, 410, 556, 1120, 1170
BseYI CCCAGC 2 cut(s) 754, 1000
BsgI GTGCAG 1 cut(s) 415
Bsh1236I CGCG 3 cut(s) 498, 541, 889
BshFI GGCC 1 cut(s) 66
BshNI GGYRCC 1 cut(s) 821
BsiHKCI CYCGRG 5 cut(s) 71, 916, 1173, 1223, 1269
BslFI GGGAC 1 cut(s) 318
BslI CCNNNNNNNGG 2 cut(s) 73, 989
BsmAI GTCTC 8 cut(s) 379, 955, 965, 1022, 1058, 1176, 1226, 1272
BsmFI GGGAC 1 cut(s) 318
BsnI GGCC 1 cut(s) 66
Bso31I GGTCTC 3 cut(s) 1176, 1226, 1272
BsoBI CYCGRG 5 cut(s) 71, 916, 1173, 1223, 1269
Bsp119I TTCGAA 5 cut(s) 1108, 1151, 1201, 1208, 1283
Bsp1286I GDGCHC 1 cut(s) 984
Bsp143I GATC 8 cut(s) 253, 314, 516, 766, 909, 1049, 1085, 1095
BspACI CCGC 9 cut(s) 88, 245, 312, 451, 498, 539, 798, 887, 889
BspANI GGCC 1 cut(s) 66
BspCNI CTCAG 4 cut(s) 389, 961, 998, 1108
BspFNI CGCG 3 cut(s) 498, 541, 889
BspHI TCATGA 2 cut(s) 772, 868
BspLI GGNNCC 4 cut(s) 86, 518, 823, 1164
BspPI GGATC 8 cut(s) 261, 322, 511, 524, 917, 1057, 1093, 1103
BspT104I TTCGAA 5 cut(s) 1108, 1151, 1201, 1208, 1283
BspT107I GGYRCC 1 cut(s) 821
BspTNI GGTCTC 3 cut(s) 1176, 1226, 1272
BsrDI GCAATG 4 cut(s) 20, 270, 469, 514
BsrI ACTGG 9 cut(s) 255, 371, 1050, 1060, 1106, 1163, 1199, 1249, 1259
BssECI CCNNGG 3 cut(s) 164, 887, 1166
BssMI GATC 8 cut(s) 253, 314, 516, 766, 909, 1049, 1085, 1095
BssT1I CCWWGG 1 cut(s) 164
Bst2UI CCWGG 2 cut(s) 101, 699
Bst4CI ACNGT 2 cut(s) 436, 536
Bst6I CTCTTC 1 cut(s) 867
BstAPI GCANNNNNTGC 1 cut(s) 96
BstBI TTCGAA 5 cut(s) 1108, 1151, 1201, 1208, 1283
BstC8I GCNNGC 1 cut(s) 887
BstDEI CTNAG 5 cut(s) 376, 969, 985, 1116, 1216
BstDSI CCRYGG 1 cut(s) 887
BstENI CCTNNNNNAGG 1 cut(s) 71
BstF5I GGATG 7 cut(s) 293, 518, 784, 1134, 1184, 1234, 1280
BstFNI CGCG 3 cut(s) 498, 541, 889
BstKTI GATC 8 cut(s) 256, 317, 519, 769, 912, 1052, 1088, 1098
BstMAI GTCTC 8 cut(s) 379, 955, 965, 1022, 1058, 1176, 1226, 1272
BstMBI GATC 8 cut(s) 253, 314, 516, 766, 909, 1049, 1085, 1095
BstMWI GCNNNNNNNGC 3 cut(s) 96, 459, 504
BstNI CCWGG 2 cut(s) 101, 699
BstSCI CCNGG 2 cut(s) 99, 697
BstUI CGCG 3 cut(s) 498, 541, 889
BstV1I GCAGC 5 cut(s) 102, 410, 556, 1120, 1170
BstX2I RGATCY 3 cut(s) 516, 766, 909
BstYI RGATCY 3 cut(s) 516, 766, 909
BsuRI GGCC 1 cut(s) 66
BtgI CCRYGG 1 cut(s) 887
BtsCI GGATG 7 cut(s) 293, 518, 784, 1134, 1184, 1234, 1280
BtsIMutI CAGTG 1 cut(s) 384
Cac8I GCNNGC 1 cut(s) 887
CciI TCATGA 2 cut(s) 772, 868
Cfr13I GGNCC 1 cut(s) 604
Cfr42I CCGCGG 1 cut(s) 890
CseI GACGC 1 cut(s) 1285
Csp6I GTAC 1 cut(s) 822
CviAII CATG 5 cut(s) 235, 392, 742, 773, 869
CviQI GTAC 1 cut(s) 822
DdeI CTNAG 5 cut(s) 376, 969, 985, 1116, 1216
DpnI GATC 8 cut(s) 255, 316, 518, 768, 911, 1051, 1087, 1097
DpnII GATC 8 cut(s) 253, 314, 516, 766, 909, 1049, 1085, 1095
DraI TTTAAA 1 cut(s) 304
Eam1104I CTCTTC 1 cut(s) 867
EarI CTCTTC 1 cut(s) 867
EciI GGCGGA 1 cut(s) 327
Eco130I CCWWGG 1 cut(s) 164
Eco147I AGGCCT 1 cut(s) 66
Eco24I GRGCYC 1 cut(s) 984
Eco31I GGTCTC 3 cut(s) 1176, 1226, 1272
Eco47I GGWCC 1 cut(s) 604
Eco88I CYCGRG 5 cut(s) 71, 916, 1173, 1223, 1269
EcoNI CCTNNNNNAGG 1 cut(s) 71
EcoRI GAATTC 1 cut(s) 590
EcoRII CCWGG 2 cut(s) 99, 697
EcoT14I CCWWGG 1 cut(s) 164
EcoT38I GRGCYC 1 cut(s) 984
ErhI CCWWGG 1 cut(s) 164
FaeI CATG 5 cut(s) 238, 395, 745, 776, 872
FalI AAGNNNNNCTT 2 cut(s) 276, 308
FaqI GGGAC 1 cut(s) 318
FatI CATG 5 cut(s) 234, 391, 741, 772, 868
FauI CCCGC 1 cut(s) 894
FauNDI CATATG 1 cut(s) 95
Fnu4HI GCNGC 5 cut(s) 91, 399, 570, 1134, 1184
FokI GGATG 7 cut(s) 300, 525, 791, 1141, 1191, 1241, 1287
FriOI GRGCYC 1 cut(s) 984
Fsp4HI GCNGC 5 cut(s) 91, 399, 570, 1134, 1184
FspBI CTAG 5 cut(s) 62, 459, 584, 1071, 1145
GluI GCNGC 5 cut(s) 91, 399, 570, 1134, 1184
GsaI CCCAGC 2 cut(s) 758, 1004
HaeIII GGCC 1 cut(s) 66
HgaI GACGC 1 cut(s) 1285
Hin1II CATG 5 cut(s) 238, 395, 745, 776, 872
HindIII AAGCTT 1 cut(s) 527
HinfI GANTC 9 cut(s) 143, 188, 238, 543, 875, 921, 1138, 1188, 1238
Hpy188I TCNGA 3 cut(s) 379, 717, 1301
Hpy188III TCNNGA 7 cut(s) 32, 425, 730, 773, 869, 1027, 1173
HpyAV CCTTC 4 cut(s) 3, 278, 346, 368
HpyCH4III ACNGT 2 cut(s) 436, 536
HpyCH4IV ACGT 2 cut(s) 48, 58
HpyCH4V TGCA 4 cut(s) 270, 275, 398, 432
HpyF10VI GCNNNNNNNGC 3 cut(s) 96, 459, 504
HpyF3I CTNAG 5 cut(s) 376, 969, 985, 1116, 1216
HpySE526I ACGT 2 cut(s) 48, 58
Hsp92II CATG 5 cut(s) 238, 395, 745, 776, 872
KpnI GGTACC 1 cut(s) 825
KspI CCGCGG 1 cut(s) 890
Kzo9I GATC 8 cut(s) 253, 314, 516, 766, 909, 1049, 1085, 1095
LmnI GCTCC 1 cut(s) 478
Lsp1109I GCAGC 5 cut(s) 102, 410, 556, 1120, 1170
LweI GCATC 1 cut(s) 284
MaeI CTAG 5 cut(s) 62, 459, 584, 1071, 1145
MaeII ACGT 2 cut(s) 48, 58
MaeIII GTNAC 3 cut(s) 208, 224, 634
MalI GATC 8 cut(s) 255, 316, 518, 768, 911, 1051, 1087, 1097
MboI GATC 8 cut(s) 253, 314, 516, 766, 909, 1049, 1085, 1095
MflI RGATCY 3 cut(s) 516, 766, 909
MhlI GDGCHC 1 cut(s) 984
MluCI AATT 9 cut(s) 126, 138, 364, 590, 651, 703, 893, 949, 1259
MlyI GAGTC 1 cut(s) 884
MmeI TCCRAC 2 cut(s) 456, 544
MseI TTAA 2 cut(s) 303, 483
MslI CAYNNNNRTG 2 cut(s) 233, 777
MspA1I CMGCKG 2 cut(s) 889, 989
MspR9I CCNGG 2 cut(s) 101, 699
MvaI CCWGG 2 cut(s) 101, 699
MvnI CGCG 3 cut(s) 498, 541, 889
MwoI GCNNNNNNNGC 3 cut(s) 96, 459, 504
NdeI CATATG 1 cut(s) 95
NdeII GATC 8 cut(s) 253, 314, 516, 766, 909, 1049, 1085, 1095
NlaIII CATG 5 cut(s) 238, 395, 745, 776, 872
NlaIV GGNNCC 4 cut(s) 86, 518, 823, 1164
NspV TTCGAA 5 cut(s) 1108, 1151, 1201, 1208, 1283
PaeR7I CTCGAG 2 cut(s) 71, 1173
PagI TCATGA 2 cut(s) 772, 868
PceI AGGCCT 1 cut(s) 66
PfeI GAWTC 8 cut(s) 143, 188, 238, 543, 921, 1138, 1188, 1238
PkrI GCNGC 5 cut(s) 92, 400, 571, 1135, 1185
PleI GAGTC 1 cut(s) 883
PpsI GAGTC 1 cut(s) 883
Psp6I CCWGG 2 cut(s) 99, 697
PspFI CCCAGC 2 cut(s) 754, 1000
PspGI CCWGG 2 cut(s) 99, 697
PspN4I GGNNCC 4 cut(s) 86, 518, 823, 1164
PspPI GGNCC 1 cut(s) 604
PspXI VCTCGAGB 1 cut(s) 71
PsuI RGATCY 3 cut(s) 516, 766, 909
PvuII CAGCTG 1 cut(s) 989
RsaI GTAC 1 cut(s) 823
RsaNI GTAC 1 cut(s) 822
RseI CAYNNNNRTG 2 cut(s) 233, 777
SacII CCGCGG 1 cut(s) 890
SaqAI TTAA 2 cut(s) 303, 483
SatI GCNGC 5 cut(s) 91, 399, 570, 1134, 1184
Sau3AI GATC 8 cut(s) 253, 314, 516, 766, 909, 1049, 1085, 1095
Sau96I GGNCC 1 cut(s) 604
SchI GAGTC 1 cut(s) 884
ScrFI CCNGG 2 cut(s) 101, 699
SduI GDGCHC 1 cut(s) 984
SfaNI GCATC 1 cut(s) 284
Sfr274I CTCGAG 2 cut(s) 71, 1173
Sfr303I CCGCGG 1 cut(s) 890
SfuI TTCGAA 5 cut(s) 1108, 1151, 1201, 1208, 1283
SgrBI CCGCGG 1 cut(s) 890
SinI GGWCC 1 cut(s) 604
SlaI CTCGAG 2 cut(s) 71, 1173
SmiMI CAYNNNNRTG 2 cut(s) 233, 777
SmlI CTYRAG 3 cut(s) 71, 623, 1173
SmoI CTYRAG 3 cut(s) 71, 623, 1173
Sse9I AATT 9 cut(s) 126, 138, 364, 590, 651, 703, 893, 949, 1259
SseBI AGGCCT 1 cut(s) 66
SsiI CCGC 9 cut(s) 88, 245, 312, 451, 498, 539, 798, 887, 889
SspI AATATT 1 cut(s) 725
SspMI CTAG 5 cut(s) 62, 459, 584, 1071, 1145
StuI AGGCCT 1 cut(s) 66
StyD4I CCNGG 2 cut(s) 99, 697
StyI CCWWGG 1 cut(s) 164
TaaI ACNGT 2 cut(s) 436, 536
TaiI ACGT 2 cut(s) 51, 61
TasI AATT 9 cut(s) 126, 138, 364, 590, 651, 703, 893, 949, 1259
TfiI GAWTC 8 cut(s) 143, 188, 238, 543, 921, 1138, 1188, 1238
Tru1I TTAA 2 cut(s) 303, 483
Tru9I TTAA 2 cut(s) 303, 483
TscAI CASTG 1 cut(s) 391
TseI GCWGC 5 cut(s) 90, 398, 569, 1133, 1183
TspDTI ATGAA 6 cut(s) 251, 297, 396, 761, 761, 885
TspRI CASTG 1 cut(s) 391
VpaK11BI GGWCC 1 cut(s) 604
XagI CCTNNNNNAGG 1 cut(s) 71
XapI RAATTY 5 cut(s) 590, 651, 703, 893, 949
XhoI CTCGAG 2 cut(s) 71, 1173
XspI CTAG 5 cut(s) 62, 459, 584, 1071, 1145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.