Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001757

Physical Location & Seq

Genomic Coordinates Reverse (-)

14764797 .. 14765465

Gene Structure 669 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012049

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGAACAAAAACAAAATCAACACTACGGGGCAAAGGCAAAATAGGGAATGGGCTGATCTCCCACCTGAACTTCTTTCACTCATAGCTGAACGTGTCGGCCCATTCGAACTTCTGAGTTTCTTTCCTGTCTGCAACGCTTGGCACTCCGCTTCCTCCACCGCTTTTGCTCACATTGTTAAGCATGAAGTAAACCAAGGACCTTGGTTTCTACTATACGAGGATAAAGATTCAGAGTGTCAGTTGCTAACTGCAAGTGGTAAGAAGTTTACCTCGAGTCTTCCTGAACTGGTTGGAACAACTTGCCTCGCAACATACCATGGATGGCTTCTTTTATTCCAACAAGGAGCAGTTTCATGTCCTCCCTCGACAACTTCCCAAGATTGCGTGGTTTGTGTCATTAGCCGCAGCAGTGATGCTGAATTGGAAGCCAAGGTACTTCACCTTGGAGAAGATCAGGCTTGGATTGAATCAAAGCATTCTCGTTCCCGAGATCACACGGATACAATCAAATGTGCTGTTTATCACAATGGAATGGGAATGTTCTGCTTTTTCGATAGAGCTGCTTTGCTTCCTGTACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

194

Amino Acids

21.52

Weight (kDa)

5.87

Isoelectric Point (pI)

47.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001757)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24380 FvH4_2g24390 FvH4_2g24391 FvH4_2g24410 FvH4_2g24671 FvH4_2g24690 FvH4_2g24690 FvH4_2g24690 FvH4_2g24700
malus_domestica	MD11G1297700.v1.1
prunus_persica	Prupe.4G274600_v2.0.a1 Prupe.8G252000_v2.0.a1
pyrus_communis	pycom06g03770
rosa_chinensis	RchiOBHm_Chr6g0292521 RchiOBHm_Chr6g0292531
rosa_laevigata	RLG00000012013 RLG00000012014 RLG00000012015 RLG00000012016 RLG00000012017 RLG00000012049
rosa_multiflora	Rmu_sc0001354.1_g000031 Rmu_sc0001354.1_g000032 Rmu_sc0003908.1_g000003
rosa_roxburghii	Rroxscaffold_7G00174980 Rroxscaffold_7G00175290
rosa_rugosa	Rorug06G0224900 Rorug06G0227400 Rorug06G0227500
rosa_samantha	Rh4AG099200 Rh4CG108900 Rh4CG412100 Rh4DG094200 Rh6AG338000 Rh6AG340600 Rh6AG340700 Rh6BG345300 Rh6BG348000 Rh6BG348100 Rh6BG348200 Rh6CG352300 Rh6CG354900 Rh6CG355000 Rh6DG338300 Rh6DG340700 Rh6DG340800
rosa_wichuraiana	Rw6G029670 Rw6G029680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	147, 159, 403
AfaI	GTAC	2 cut(s)	435, 576
AflIII	ACRYGT	1 cut(s)	91
AgsI	TTSAA	1 cut(s)	467
AluBI	AGCT	2 cut(s)	86, 560
AluI	AGCT	2 cut(s)	86, 560
Ama87I	CYCGRG	2 cut(s)	271, 486
AoxI	GGCC	1 cut(s)	97
ApeKI	GCWGC	2 cut(s)	405, 560
AspS9I	GGNCC	2 cut(s)	98, 197
AsuHPI	GGTGA	1 cut(s)	431
AsuII	TTCGAA	1 cut(s)	105
AvaI	CYCGRG	2 cut(s)	271, 486
AvaII	GGWCC	1 cut(s)	197
BarI	GAAGNNNNNNTAC	2 cut(s)	417, 449
BbsI	GAAGAC	1 cut(s)	269
BbvI	GCAGC	2 cut(s)	417, 547
BccI	CCATC	1 cut(s)	315
BcgI	CGANNNNNNTGC	2 cut(s)	542, 576
BciVI	GTATCC	1 cut(s)	493
BfuI	GTATCC	1 cut(s)	493
BisI	GCNGC	3 cut(s)	403, 406, 561
BlsI	GCNGC	3 cut(s)	404, 407, 562
Bme18I	GGWCC	1 cut(s)	197
BmeT110I	CYCGRG	2 cut(s)	271, 486
BmgT120I	GGNCC	2 cut(s)	98, 197
BmsI	GCATC	1 cut(s)	403
BpiI	GAAGAC	1 cut(s)	269
Bpu14I	TTCGAA	1 cut(s)	105
BsaJI	CCNNGG	5 cut(s)	193, 200, 316, 429, 442
Bse1I	ACTGG	1 cut(s)	291
BseDI	CCNNGG	5 cut(s)	193, 200, 316, 429, 442
BseGI	GGATG	1 cut(s)	326
BseMII	CTCAG	1 cut(s)	104
BseNI	ACTGG	1 cut(s)	291
BseXI	GCAGC	2 cut(s)	417, 547
BshFI	GGCC	1 cut(s)	99
BsiHKCI	CYCGRG	2 cut(s)	271, 486
BsmI	GAATGC	1 cut(s)	475
BsnI	GGCC	1 cut(s)	99
BsoBI	CYCGRG	2 cut(s)	271, 486
Bsp119I	TTCGAA	1 cut(s)	105
Bsp143I	GATC	3 cut(s)	55, 451, 490
Bsp19I	CCATGG	1 cut(s)	316
BspACI	CCGC	3 cut(s)	147, 159, 403
BspANI	GGCC	1 cut(s)	99
BspCNI	CTCAG	1 cut(s)	105
BspT104I	TTCGAA	1 cut(s)	105
BsrI	ACTGG	1 cut(s)	291
BssECI	CCNNGG	5 cut(s)	193, 200, 316, 429, 442
BssMI	GATC	3 cut(s)	55, 451, 490
BssT1I	CCWWGG	5 cut(s)	193, 200, 316, 429, 442
BstBI	TTCGAA	1 cut(s)	105
BstDEI	CTNAG	1 cut(s)	113
BstDSI	CCRYGG	1 cut(s)	316
BstF5I	GGATG	1 cut(s)	326
BstKTI	GATC	3 cut(s)	58, 454, 493
BstMBI	GATC	3 cut(s)	55, 451, 490
BstV1I	GCAGC	2 cut(s)	417, 547
BstV2I	GAAGAC	1 cut(s)	269
BsuI	GTATCC	1 cut(s)	493
BsuRI	GGCC	1 cut(s)	99
BtgI	CCRYGG	1 cut(s)	316
BtsCI	GGATG	1 cut(s)	326
BtsI	GCAGTG	1 cut(s)	415
BtsIMutI	CAGTG	1 cut(s)	415
Cfr13I	GGNCC	2 cut(s)	98, 197
Csp6I	GTAC	2 cut(s)	434, 575
CspCI	CAANNNNNGTGG	2 cut(s)	145, 180
CviAII	CATG	4 cut(s)	182, 317, 354, 579
CviJI	RGCY	8 cut(s)	53, 86, 99, 325, 402, 428, 458, 560
CviKI_1	RGCY	8 cut(s)	53, 86, 99, 325, 402, 428, 458, 560
CviQI	GTAC	2 cut(s)	434, 575
DdeI	CTNAG	1 cut(s)	113
DpnI	GATC	3 cut(s)	57, 453, 492
DpnII	GATC	3 cut(s)	55, 451, 490
Eco130I	CCWWGG	5 cut(s)	193, 200, 316, 429, 442
Eco47I	GGWCC	1 cut(s)	197
Eco88I	CYCGRG	2 cut(s)	271, 486
EcoO109I	RGGNCCY	1 cut(s)	197
EcoT14I	CCWWGG	5 cut(s)	193, 200, 316, 429, 442
ErhI	CCWWGG	5 cut(s)	193, 200, 316, 429, 442
FaeI	CATG	4 cut(s)	185, 320, 357, 582
FaiI	YATR	7 cut(s)	83, 183, 214, 313, 318, 355, 580
FatI	CATG	4 cut(s)	181, 316, 353, 578
Fnu4HI	GCNGC	3 cut(s)	403, 406, 561
FokI	GGATG	1 cut(s)	333
Fsp4HI	GCNGC	3 cut(s)	403, 406, 561
GluI	GCNGC	3 cut(s)	403, 406, 561
HaeIII	GGCC	1 cut(s)	99
Hin1II	CATG	4 cut(s)	185, 320, 357, 582
HinfI	GANTC	3 cut(s)	227, 274, 467
HphI	GGTGA	1 cut(s)	431
Hpy166II	GTNNAC	2 cut(s)	190, 267
Hpy188I	TCNGA	2 cut(s)	114, 232
Hpy188III	TCNNGA	2 cut(s)	281, 486
Hpy8I	GTNNAC	2 cut(s)	190, 267
HpyCH4IV	ACGT	1 cut(s)	91
HpyCH4V	TGCA	2 cut(s)	132, 251
HpyF3I	CTNAG	1 cut(s)	113
HpySE526I	ACGT	1 cut(s)	91
Hsp92II	CATG	4 cut(s)	185, 320, 357, 582
Kzo9I	GATC	3 cut(s)	55, 451, 490
LmnI	GCTCC	1 cut(s)	344
LpnPI	CCDG	5 cut(s)	78, 138, 272, 294, 440
Lsp1109I	GCAGC	2 cut(s)	417, 547
LweI	GCATC	1 cut(s)	403
MaeII	ACGT	1 cut(s)	91
MalI	GATC	3 cut(s)	57, 453, 492
MboI	GATC	3 cut(s)	55, 451, 490
MboII	GAAGA	2 cut(s)	269, 461
MluCI	AATT	1 cut(s)	419
MlyI	GAGTC	1 cut(s)	283
MmeI	TCCRAC	2 cut(s)	271, 361
MnlI	CCTC	6 cut(s)	163, 211, 280, 314, 369, 373
MseI	TTAA	1 cut(s)	177
Mva1269I	GAATGC	1 cut(s)	475
NcoI	CCATGG	1 cut(s)	316
NdeII	GATC	3 cut(s)	55, 451, 490
NlaIII	CATG	4 cut(s)	185, 320, 357, 582
NspV	TTCGAA	1 cut(s)	105
PaeR7I	CTCGAG	1 cut(s)	271
PcsI	WCGNNNNNNNCGW	1 cut(s)	102
PctI	GAATGC	1 cut(s)	475
PfeI	GAWTC	2 cut(s)	227, 467
PkrI	GCNGC	3 cut(s)	404, 407, 562
PleI	GAGTC	1 cut(s)	282
PpsI	GAGTC	1 cut(s)	282
PpuMI	RGGWCCY	1 cut(s)	197
Psp5II	RGGWCCY	1 cut(s)	197
PspPI	GGNCC	2 cut(s)	98, 197
PspPPI	RGGWCCY	1 cut(s)	197
PspXI	VCTCGAGB	1 cut(s)	271
RsaI	GTAC	2 cut(s)	435, 576
RsaNI	GTAC	2 cut(s)	434, 575
SaqAI	TTAA	1 cut(s)	177
SatI	GCNGC	3 cut(s)	403, 406, 561
Sau3AI	GATC	3 cut(s)	55, 451, 490
Sau96I	GGNCC	2 cut(s)	98, 197
SchI	GAGTC	1 cut(s)	283
SetI	ASST	8 cut(s)	67, 88, 94, 202, 272, 435, 444, 562
SfaNI	GCATC	1 cut(s)	403
Sfr274I	CTCGAG	1 cut(s)	271
SfuI	TTCGAA	1 cut(s)	105
SinI	GGWCC	1 cut(s)	197
SlaI	CTCGAG	1 cut(s)	271
SmlI	CTYRAG	1 cut(s)	271
SmoI	CTYRAG	1 cut(s)	271
Sse9I	AATT	1 cut(s)	419
SsiI	CCGC	3 cut(s)	147, 159, 403
StyI	CCWWGG	5 cut(s)	193, 200, 316, 429, 442
TaiI	ACGT	1 cut(s)	94
TaqI	TCGA	4 cut(s)	105, 272, 365, 552
TasI	AATT	1 cut(s)	419
TauI	GCSGC	1 cut(s)	405
TfiI	GAWTC	2 cut(s)	227, 467
Tru1I	TTAA	1 cut(s)	177
Tru9I	TTAA	1 cut(s)	177
TscAI	CASTG	1 cut(s)	415
TseI	GCWGC	2 cut(s)	405, 560
TspDTI	ATGAA	3 cut(s)	17, 198, 342
TspGWI	ACGGA	1 cut(s)	512
TspRI	CASTG	1 cut(s)	415
VpaK11BI	GGWCC	1 cut(s)	197
XhoI	CTCGAG	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.