RLG00000012014

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0001757
Physical Location & Seq
Reverse (-)
14564809 .. 14565520
712 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012014

Sequence Viewer

Length: 354 bp
ATGGAGCCGATGAATGGACCAAACACAATTATTCTAGTAAAAGGAATAAGATTAACGCAGTCAAAGGTGCTGCTTATCACAAAGAGGGCGGAGAGTTCTACTTTTTTGACCCTGATCAAAAGCATGGATTATTTCCGGACAGAGAACTTTAAGAACAAGCTCGAGTTGGCGGAGGATGCTTCGATTTCTACTTGTGGGATACAAATGGAGATTGGTGGCAAAGTTGTTTGCGGTGAGAGCATTACTGCTGTTGGTGTTGAAGACCAATCCAAGAGACGCGGTACTAGTCCTACTCGATCACCTGAGAACTCCAAGGTTTTGGTTTTCGGGGTCTTGGTTTTTGATTATTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

118

Amino Acids

12.96

Weight (kDa)

8.62

Isoelectric Point (pI)

44.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 279
AccIII TCCGGA 1 cut(s) 135
AciI CCGC 4 cut(s) 89, 170, 231, 279
AfaI GTAC 1 cut(s) 283
AfiI CCNNNNNNNGG 1 cut(s) 14
AgsI TTSAA 1 cut(s) 260
AhlI ACTAGT 1 cut(s) 284
AluBI AGCT 1 cut(s) 160
AluI AGCT 1 cut(s) 160
Alw26I GTCTC 1 cut(s) 268
Ama87I CYCGRG 1 cut(s) 161
Aor13HI TCCGGA 1 cut(s) 135
ApeKI GCWGC 1 cut(s) 70
AspS9I GGNCC 1 cut(s) 17
AsuHPI GGTGA 2 cut(s) 245, 291
AvaI CYCGRG 1 cut(s) 161
AvaII GGWCC 1 cut(s) 17
BbsI GAAGAC 1 cut(s) 267
BbvI GCAGC 1 cut(s) 57
BciVI GTATCC 1 cut(s) 192
BclI TGATCA 1 cut(s) 114
BcoDI GTCTC 1 cut(s) 268
BcuI ACTAGT 1 cut(s) 284
BfaI CTAG 2 cut(s) 35, 285
BfuI GTATCC 1 cut(s) 192
BisI GCNGC 1 cut(s) 71
BlsI GCNGC 1 cut(s) 72
Bme18I GGWCC 1 cut(s) 17
BmeT110I CYCGRG 1 cut(s) 161
BmgT120I GGNCC 1 cut(s) 17
BmiI GGNNCC 1 cut(s) 6
BmsI GCATC 1 cut(s) 166
BpiI GAAGAC 1 cut(s) 267
BsaJI CCNNGG 1 cut(s) 312
BsaWI WCCGGW 1 cut(s) 135
Bsc4I CCNNNNNNNGG 1 cut(s) 14
BseAI TCCGGA 1 cut(s) 135
BseDI CCNNGG 1 cut(s) 312
BseGI GGATG 1 cut(s) 181
BseLI CCNNNNNNNGG 1 cut(s) 14
BseMII CTCAG 1 cut(s) 294
BseXI GCAGC 1 cut(s) 57
Bsh1236I CGCG 1 cut(s) 279
BsiHKCI CYCGRG 1 cut(s) 161
BsiSI CCGG 1 cut(s) 136
BslI CCNNNNNNNGG 1 cut(s) 14
BsmAI GTCTC 1 cut(s) 268
BsmBI CGTCTC 1 cut(s) 268
BsoBI CYCGRG 1 cut(s) 161
Bsp13I TCCGGA 1 cut(s) 135
Bsp143I GATC 2 cut(s) 114, 296
BspACI CCGC 4 cut(s) 89, 170, 231, 279
BspCNI CTCAG 1 cut(s) 295
BspEI TCCGGA 1 cut(s) 135
BspFNI CGCG 1 cut(s) 279
BspLI GGNNCC 1 cut(s) 6
BssECI CCNNGG 1 cut(s) 312
BssMI GATC 2 cut(s) 114, 296
BssT1I CCWWGG 1 cut(s) 312
BstDEI CTNAG 1 cut(s) 303
BstF5I GGATG 1 cut(s) 181
BstFNI CGCG 1 cut(s) 279
BstKTI GATC 2 cut(s) 117, 299
BstMAI GTCTC 1 cut(s) 268
BstMBI GATC 2 cut(s) 114, 296
BstMWI GCNNNNNNNGC 2 cut(s) 176, 237
BstUI CGCG 1 cut(s) 279
BstV1I GCAGC 1 cut(s) 57
BstV2I GAAGAC 1 cut(s) 267
BstXI CCANNNNNNTGG 1 cut(s) 319
BsuI GTATCC 1 cut(s) 192
BtsCI GGATG 1 cut(s) 181
Cfr13I GGNCC 1 cut(s) 17
CseI GACGC 1 cut(s) 285
Csp6I GTAC 1 cut(s) 282
CviAII CATG 1 cut(s) 124
CviJI RGCY 2 cut(s) 7, 160
CviKI_1 RGCY 2 cut(s) 7, 160
CviQI GTAC 1 cut(s) 282
DdeI CTNAG 1 cut(s) 303
DpnI GATC 2 cut(s) 116, 298
DpnII GATC 2 cut(s) 114, 296
EciI GGCGGA 2 cut(s) 104, 185
Eco130I CCWWGG 1 cut(s) 312
Eco47I GGWCC 1 cut(s) 17
Eco88I CYCGRG 1 cut(s) 161
EcoT14I CCWWGG 1 cut(s) 312
ErhI CCWWGG 1 cut(s) 312
Esp3I CGTCTC 1 cut(s) 268
FaeI CATG 1 cut(s) 127
FaiI YATR 1 cut(s) 125
FatI CATG 1 cut(s) 123
FbaI TGATCA 1 cut(s) 114
Fnu4HI GCNGC 1 cut(s) 71
FokI GGATG 1 cut(s) 188
Fsp4HI GCNGC 1 cut(s) 71
FspBI CTAG 2 cut(s) 35, 285
GluI GCNGC 1 cut(s) 71
HapII CCGG 1 cut(s) 136
HgaI GACGC 1 cut(s) 285
Hin1II CATG 1 cut(s) 127
HpaII CCGG 1 cut(s) 136
HphI GGTGA 2 cut(s) 245, 291
Hpy188III TCNNGA 1 cut(s) 136
HpyF10VI GCNNNNNNNGC 2 cut(s) 176, 237
HpyF3I CTNAG 1 cut(s) 303
Hsp92II CATG 1 cut(s) 127
Kpn2I TCCGGA 1 cut(s) 135
Ksp22I TGATCA 1 cut(s) 114
Kzo9I GATC 2 cut(s) 114, 296
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 3 cut(s) 125, 149, 315
Lsp1109I GCAGC 1 cut(s) 57
LweI GCATC 1 cut(s) 166
MaeI CTAG 2 cut(s) 35, 285
MalI GATC 2 cut(s) 116, 298
MboI GATC 2 cut(s) 114, 296
MboII GAAGA 1 cut(s) 272
MluCI AATT 1 cut(s) 27
MnlI CCTC 2 cut(s) 78, 166
MroI TCCGGA 1 cut(s) 135
MseI TTAA 2 cut(s) 53, 150
MspI CCGG 1 cut(s) 136
MvnI CGCG 1 cut(s) 279
MwoI GCNNNNNNNGC 2 cut(s) 176, 237
NdeII GATC 2 cut(s) 114, 296
NlaIII CATG 1 cut(s) 127
NlaIV GGNNCC 1 cut(s) 6
PaeR7I CTCGAG 1 cut(s) 161
PkrI GCNGC 1 cut(s) 72
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 17
PspXI VCTCGAGB 1 cut(s) 161
RsaI GTAC 1 cut(s) 283
RsaNI GTAC 1 cut(s) 282
SaqAI TTAA 2 cut(s) 53, 150
SatI GCNGC 1 cut(s) 71
Sau3AI GATC 2 cut(s) 114, 296
Sau96I GGNCC 1 cut(s) 17
SetI ASST 4 cut(s) 69, 162, 304, 318
SfaNI GCATC 1 cut(s) 166
Sfr274I CTCGAG 1 cut(s) 161
SinI GGWCC 1 cut(s) 17
SlaI CTCGAG 1 cut(s) 161
SmlI CTYRAG 1 cut(s) 161
SmoI CTYRAG 1 cut(s) 161
SpeI ACTAGT 1 cut(s) 284
Sse9I AATT 1 cut(s) 27
SsiI CCGC 4 cut(s) 89, 170, 231, 279
SspMI CTAG 2 cut(s) 35, 285
StyI CCWWGG 1 cut(s) 312
TaqI TCGA 3 cut(s) 162, 182, 295
TasI AATT 1 cut(s) 27
Tru1I TTAA 2 cut(s) 53, 150
Tru9I TTAA 2 cut(s) 53, 150
TseI GCWGC 1 cut(s) 70
TspDTI ATGAA 1 cut(s) 26
VpaK11BI GGWCC 1 cut(s) 17
XhoI CTCGAG 1 cut(s) 161
XspI CTAG 2 cut(s) 35, 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.