Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001757

Physical Location & Seq

Genomic Coordinates Reverse (-)

14585037 .. 14591359

Gene Structure 6323 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012015

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1278 bp

ATGAGCCGAAGGCAATGGTCTGATCTTCCTCCTGAACTTATCACAGACATAGCAGACCGTCTAGGCCTACTCGAGGTTGTGAGGTTCCGCAGCATATGCCAGGCTTGGAACTCTGCTTCTTCTACAATTTCAGCTAAAATTGAATCTTTACTAAACTATAAACCTTGGTTTCTACATTATGGGTATGATTCTGCCCAATGTCAGTTGGTAACTACTGAAAGTGGTAACATTACCATGAATCTTCCGCAACTGGATCAAACTACAACTTGCATTGCATCGTATGAAGGATGGCTTCTTGTTTTTAAACAAGGCGGATCAATGTTCTTCTTTCGTCCCTTCTCAAAAACAGAGATAGACATTCCCAATTTCCCAGTCTCAGAACTCACTGACCATGTTGCAGCATTTTCATCTCCTCCTACATCTCCTGACTGCACAGTTTGTGTCATCAACCGTAGTACTAGCAATGACGATGTGTTGGAGCTTAATCTACTTTGTCGCGGAGGAGGCAATGGATGGATCCAACACAAGCTTGACTGTCCGCGATTCTCCATTGATACAATCAAATGTGCTGCTTATAGCAAACTAGGAGAATTCTGCTTTTTGGACCATGGTGATAACAAACTCAAATTATCAGTTACACACAACGGAGAAATTTGCTGGAAGAATAATAAAGTAGTTGAGGCGAAAGATAACTTACCAGCAAATTTTTATTATCAGATGGAATATTTCAAGAAAACTGACATGATGAACAAGCTGGGGTTAGCAGATCTTCATGAGGATGTTTCGTTTTCTGTTTGCGGAACACAAACAGAGTATAATGGTATCGACTATTTTATATATAATGAGATTTATAGTATCAGTAATCATCATGAAGAGTCCAATAGCCCGCGGAAATTCAAAGGGAGTTTCTATCGCATCTACAAGGCTTGGAGATATGCTTCTTTTACAGTTTTACCTCAGATTCTTGAGACCGAACTAAACCAAGGGCCTTTGTTTCTACTTTATGAGGACACAAATTCTGAGTGCCGGTTGCTAAGTGGAAGTGGTAAGAAGTTAACAATGAGTCTCCCTGAACTGGATGGAACCACTTGCCTTGCCACATACCACGGCTGGCTTCTTCTGTTCCAACAAGGATGTGGTTCCATGTTCTTCTTTCACCTTTGCCGTAGCCAAAGAATAGACCTTCCAGAGTTCCCAGACCCAGAACTCACTGATCATGTTGCAGCAGTTTCATCGCCTCAAACTGAATTCCCAAGATTGCGTGGTTTGTGTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

426

Amino Acids

48.39

Weight (kDa)

5.49

Isoelectric Point (pI)

45.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	6 - 41	5.1e-06	F-box domain
Beta-prop_KIB1-4	PF03478	78 - 223	1.5e-12	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001757)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24380 FvH4_2g24390 FvH4_2g24391 FvH4_2g24410 FvH4_2g24671 FvH4_2g24690 FvH4_2g24690 FvH4_2g24690 FvH4_2g24700
malus_domestica	MD11G1297700.v1.1
prunus_persica	Prupe.4G274600_v2.0.a1 Prupe.8G252000_v2.0.a1
pyrus_communis	pycom06g03770
rosa_chinensis	RchiOBHm_Chr6g0292521 RchiOBHm_Chr6g0292531
rosa_laevigata	RLG00000012013 RLG00000012014 RLG00000012015 RLG00000012016 RLG00000012017 RLG00000012049
rosa_multiflora	Rmu_sc0001354.1_g000031 Rmu_sc0001354.1_g000032 Rmu_sc0003908.1_g000003
rosa_roxburghii	Rroxscaffold_7G00174980 Rroxscaffold_7G00175290
rosa_rugosa	Rorug06G0224900 Rorug06G0227400 Rorug06G0227500
rosa_samantha	Rh4AG099200 Rh4CG108900 Rh4CG412100 Rh4DG094200 Rh6AG338000 Rh6AG340600 Rh6AG340700 Rh6BG345300 Rh6BG348000 Rh6BG348100 Rh6BG348200 Rh6CG352300 Rh6CG354900 Rh6CG355000 Rh6DG338300 Rh6DG340700 Rh6DG340800
rosa_wichuraiana	Rw6G029670 Rw6G029680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	498, 541, 889
AciI	CCGC	8 cut(s)	88, 245, 312, 498, 539, 798, 887, 889
AclWI	GGATC	4 cut(s)	261, 322, 511, 524
AcsI	RAATTY	6 cut(s)	590, 651, 703, 893, 1015, 1247
AfaI	GTAC	1 cut(s)	457
AfiI	CCNNNNNNNGG	2 cut(s)	73, 1075
AgsI	TTSAA	3 cut(s)	143, 730, 898
AjnI	CCWGG	1 cut(s)	99
AluBI	AGCT	4 cut(s)	134, 481, 529, 754
AluI	AGCT	4 cut(s)	134, 481, 529, 754
Alw26I	GTCTC	3 cut(s)	379, 962, 1070
AlwI	GGATC	4 cut(s)	261, 322, 511, 524
Ama87I	CYCGRG	1 cut(s)	71
AoxI	GGCC	2 cut(s)	64, 986
ApeKI	GCWGC	4 cut(s)	90, 398, 569, 1223
ApoI	RAATTY	6 cut(s)	590, 651, 703, 893, 1015, 1247
AspS9I	GGNCC	2 cut(s)	604, 986
AsuHPI	GGTGA	2 cut(s)	623, 1148
AvaI	CYCGRG	1 cut(s)	71
AvaII	GGWCC	1 cut(s)	604
BamHI	GGATCC	1 cut(s)	516
BbvI	GCAGC	4 cut(s)	102, 410, 556, 1235
BccI	CCATC	4 cut(s)	282, 507, 712, 1073
BceAI	ACGGC	2 cut(s)	1123, 1149
BcgI	CGANNNNNNTGC	2 cut(s)	1215, 1249
BciT130I	CCWGG	1 cut(s)	101
BclI	TGATCA	1 cut(s)	1213
BcoDI	GTCTC	3 cut(s)	379, 962, 1070
BfaI	CTAG	3 cut(s)	62, 459, 584
BglII	AGATCT	1 cut(s)	766
BisI	GCNGC	4 cut(s)	91, 399, 570, 1224
BlsI	GCNGC	4 cut(s)	92, 400, 571, 1225
BmcAI	AGTACT	1 cut(s)	457
Bme1390I	CCNGG	1 cut(s)	101
Bme18I	GGWCC	1 cut(s)	604
BmeT110I	CYCGRG	1 cut(s)	71
BmgT120I	GGNCC	2 cut(s)	604, 986
BmiI	GGNNCC	4 cut(s)	86, 518, 1084, 1141
BmrFI	CCNGG	1 cut(s)	101
BmrI	ACTGGG	1 cut(s)	365
BmsI	GCATC	2 cut(s)	284, 924
BmuI	ACTGGG	1 cut(s)	365
BpuEI	CTTGAG	1 cut(s)	986
BsaI	GGTCTC	1 cut(s)	962
BsaJI	CCNNGG	5 cut(s)	164, 607, 887, 982, 1105
Bsc4I	CCNNNNNNNGG	2 cut(s)	73, 1075
Bse118I	RCCGGY	1 cut(s)	1026
Bse1I	ACTGG	3 cut(s)	255, 371, 1080
Bse3DI	GCAATG	4 cut(s)	20, 270, 469, 514
BseBI	CCWGG	1 cut(s)	101
BseDI	CCNNGG	5 cut(s)	164, 607, 887, 982, 1105
BseGI	GGATG	5 cut(s)	293, 518, 784, 1084, 1139
BseLI	CCNNNNNNNGG	2 cut(s)	73, 1075
BseMI	GCAATG	4 cut(s)	20, 270, 469, 514
BseMII	CTCAG	3 cut(s)	390, 971, 1011
BseNI	ACTGG	3 cut(s)	255, 371, 1080
BseRI	GAGGAG	2 cut(s)	402, 516
BseXI	GCAGC	4 cut(s)	102, 410, 556, 1235
BseYI	CCCAGC	1 cut(s)	754
BsgI	GTGCAG	1 cut(s)	415
Bsh1236I	CGCG	3 cut(s)	498, 541, 889
BshFI	GGCC	2 cut(s)	66, 988
BsiHKCI	CYCGRG	1 cut(s)	71
BsiSI	CCGG	1 cut(s)	1027
BslFI	GGGAC	1 cut(s)	318
BslI	CCNNNNNNNGG	2 cut(s)	73, 1075
BsmAI	GTCTC	3 cut(s)	379, 962, 1070
BsmFI	GGGAC	1 cut(s)	318
BsnI	GGCC	2 cut(s)	66, 988
Bso31I	GGTCTC	1 cut(s)	962
BsoBI	CYCGRG	1 cut(s)	71
Bsp143I	GATC	6 cut(s)	22, 253, 314, 516, 766, 1213
Bsp19I	CCATGG	1 cut(s)	607
BspACI	CCGC	8 cut(s)	88, 245, 312, 498, 539, 798, 887, 889
BspANI	GGCC	2 cut(s)	66, 988
BspCNI	CTCAG	3 cut(s)	389, 970, 1012
BspFNI	CGCG	3 cut(s)	498, 541, 889
BspHI	TCATGA	2 cut(s)	772, 868
BspLI	GGNNCC	4 cut(s)	86, 518, 1084, 1141
BspPI	GGATC	4 cut(s)	261, 322, 511, 524
BspTNI	GGTCTC	1 cut(s)	962
BsrDI	GCAATG	4 cut(s)	20, 270, 469, 514
BsrFI	RCCGGY	1 cut(s)	1026
BsrI	ACTGG	3 cut(s)	255, 371, 1080
BssAI	RCCGGY	1 cut(s)	1026
BssECI	CCNNGG	5 cut(s)	164, 607, 887, 982, 1105
BssMI	GATC	6 cut(s)	22, 253, 314, 516, 766, 1213
BssT1I	CCWWGG	3 cut(s)	164, 607, 982
Bst2UI	CCWGG	1 cut(s)	101
Bst4CI	ACNGT	5 cut(s)	59, 436, 452, 536, 949
Bst6I	CTCTTC	1 cut(s)	867
BstAPI	GCANNNNNTGC	1 cut(s)	96
BstC8I	GCNNGC	2 cut(s)	887, 1112
BstDEI	CTNAG	4 cut(s)	376, 957, 1020, 1034
BstDSI	CCRYGG	3 cut(s)	607, 887, 1105
BstENI	CCTNNNNNAGG	1 cut(s)	71
BstF5I	GGATG	5 cut(s)	293, 518, 784, 1084, 1139
BstFNI	CGCG	3 cut(s)	498, 541, 889
BstKTI	GATC	6 cut(s)	25, 256, 317, 519, 769, 1216
BstMAI	GTCTC	3 cut(s)	379, 962, 1070
BstMBI	GATC	6 cut(s)	22, 253, 314, 516, 766, 1213
BstMWI	GCNNNNNNNGC	2 cut(s)	96, 504
BstNI	CCWGG	1 cut(s)	101
BstSCI	CCNGG	1 cut(s)	99
BstUI	CGCG	3 cut(s)	498, 541, 889
BstV1I	GCAGC	4 cut(s)	102, 410, 556, 1235
BstX2I	RGATCY	2 cut(s)	516, 766
BstYI	RGATCY	2 cut(s)	516, 766
BsuRI	GGCC	2 cut(s)	66, 988
BtgI	CCRYGG	3 cut(s)	607, 887, 1105
BtgZI	GCGATG	1 cut(s)	1218
BtsCI	GGATG	5 cut(s)	293, 518, 784, 1084, 1139
BtsIMutI	CAGTG	2 cut(s)	384, 1209
Cac8I	GCNNGC	2 cut(s)	887, 1112
CciI	TCATGA	2 cut(s)	772, 868
Cfr10I	RCCGGY	1 cut(s)	1026
Cfr13I	GGNCC	2 cut(s)	604, 986
Cfr42I	CCGCGG	1 cut(s)	890
Csp6I	GTAC	1 cut(s)	456
CspCI	CAANNNNNGTGG	2 cut(s)	1075, 1110
CviAII	CATG	8 cut(s)	235, 392, 608, 742, 773, 869, 1144, 1217
CviQI	GTAC	1 cut(s)	456
DdeI	CTNAG	4 cut(s)	376, 957, 1020, 1034
DpnI	GATC	6 cut(s)	24, 255, 316, 518, 768, 1215
DpnII	GATC	6 cut(s)	22, 253, 314, 516, 766, 1213
DraI	TTTAAA	1 cut(s)	304
Eam1104I	CTCTTC	1 cut(s)	867
EarI	CTCTTC	1 cut(s)	867
EciI	GGCGGA	1 cut(s)	327
Eco130I	CCWWGG	3 cut(s)	164, 607, 982
Eco147I	AGGCCT	1 cut(s)	66
Eco31I	GGTCTC	1 cut(s)	962
Eco47I	GGWCC	1 cut(s)	604
Eco88I	CYCGRG	1 cut(s)	71
EcoNI	CCTNNNNNAGG	1 cut(s)	71
EcoO109I	RGGNCCY	1 cut(s)	986
EcoRI	GAATTC	2 cut(s)	590, 1247
EcoRII	CCWGG	1 cut(s)	99
EcoT14I	CCWWGG	3 cut(s)	164, 607, 982
ErhI	CCWWGG	3 cut(s)	164, 607, 982
FaeI	CATG	8 cut(s)	238, 395, 611, 745, 776, 872, 1147, 1220
FalI	AAGNNNNNCTT	2 cut(s)	276, 308
FaqI	GGGAC	1 cut(s)	318
FatI	CATG	8 cut(s)	234, 391, 607, 741, 772, 868, 1143, 1216
FauI	CCCGC	1 cut(s)	894
FauNDI	CATATG	1 cut(s)	95
FbaI	TGATCA	1 cut(s)	1213
Fnu4HI	GCNGC	4 cut(s)	91, 399, 570, 1224
FokI	GGATG	5 cut(s)	300, 525, 791, 1091, 1146
Fsp4HI	GCNGC	4 cut(s)	91, 399, 570, 1224
FspBI	CTAG	3 cut(s)	62, 459, 584
GluI	GCNGC	4 cut(s)	91, 399, 570, 1224
GsaI	CCCAGC	1 cut(s)	758
HaeIII	GGCC	2 cut(s)	66, 988
HapII	CCGG	1 cut(s)	1027
Hin1II	CATG	8 cut(s)	238, 395, 611, 745, 776, 872, 1147, 1220
HincII	GTYRAC	1 cut(s)	1056
HindII	GTYRAC	1 cut(s)	1056
HindIII	AAGCTT	1 cut(s)	527
HinfI	GANTC	7 cut(s)	143, 188, 238, 543, 875, 961, 1063
HpaI	GTTAAC	1 cut(s)	1056
HpaII	CCGG	1 cut(s)	1027
HphI	GGTGA	2 cut(s)	623, 1148
Hpy166II	GTNNAC	1 cut(s)	1056
Hpy188I	TCNGA	5 cut(s)	22, 379, 717, 960, 1021
Hpy188III	TCNNGA	7 cut(s)	32, 425, 730, 773, 869, 965, 1187
Hpy8I	GTNNAC	1 cut(s)	1056
HpyAV	CCTTC	4 cut(s)	3, 278, 346, 1193
HpyCH4III	ACNGT	5 cut(s)	59, 436, 452, 536, 949
HpyCH4V	TGCA	5 cut(s)	270, 275, 398, 432, 1223
HpyF10VI	GCNNNNNNNGC	2 cut(s)	96, 504
HpyF3I	CTNAG	4 cut(s)	376, 957, 1020, 1034
Hsp92II	CATG	8 cut(s)	238, 395, 611, 745, 776, 872, 1147, 1220
Ksp22I	TGATCA	1 cut(s)	1213
KspAI	GTTAAC	1 cut(s)	1056
KspI	CCGCGG	1 cut(s)	890
Kzo9I	GATC	6 cut(s)	22, 253, 314, 516, 766, 1213
LmnI	GCTCC	1 cut(s)	478
Lsp1109I	GCAGC	4 cut(s)	102, 410, 556, 1235
LweI	GCATC	2 cut(s)	284, 924
MaeI	CTAG	3 cut(s)	62, 459, 584
MaeIII	GTNAC	3 cut(s)	208, 224, 634
MalI	GATC	6 cut(s)	24, 255, 316, 518, 768, 1215
MboI	GATC	6 cut(s)	22, 253, 314, 516, 766, 1213
MboII	GAAGA	9 cut(s)	17, 111, 233, 316, 673, 761, 884, 1109, 1141
MflI	RGATCY	2 cut(s)	516, 766
MlyI	GAGTC	2 cut(s)	884, 1072
MmeI	TCCRAC	3 cut(s)	456, 544, 1150
MseI	TTAA	3 cut(s)	303, 483, 1055
MslI	CAYNNNNRTG	2 cut(s)	233, 777
MspA1I	CMGCKG	1 cut(s)	889
MspI	CCGG	1 cut(s)	1027
MspR9I	CCNGG	1 cut(s)	101
MvaI	CCWGG	1 cut(s)	101
MvnI	CGCG	3 cut(s)	498, 541, 889
MwoI	GCNNNNNNNGC	2 cut(s)	96, 504
NcoI	CCATGG	1 cut(s)	607
NdeI	CATATG	1 cut(s)	95
NdeII	GATC	6 cut(s)	22, 253, 314, 516, 766, 1213
NlaIII	CATG	8 cut(s)	238, 395, 611, 745, 776, 872, 1147, 1220
NlaIV	GGNNCC	4 cut(s)	86, 518, 1084, 1141
PaeR7I	CTCGAG	1 cut(s)	71
PagI	TCATGA	2 cut(s)	772, 868
PceI	AGGCCT	1 cut(s)	66
PfeI	GAWTC	5 cut(s)	143, 188, 238, 543, 961
PkrI	GCNGC	4 cut(s)	92, 400, 571, 1225
PleI	GAGTC	2 cut(s)	883, 1071
PpsI	GAGTC	2 cut(s)	883, 1071
Psp6I	CCWGG	1 cut(s)	99
PspFI	CCCAGC	1 cut(s)	754
PspGI	CCWGG	1 cut(s)	99
PspN4I	GGNNCC	4 cut(s)	86, 518, 1084, 1141
PspPI	GGNCC	2 cut(s)	604, 986
PspXI	VCTCGAGB	1 cut(s)	71
PsuI	RGATCY	2 cut(s)	516, 766
RsaI	GTAC	1 cut(s)	457
RsaNI	GTAC	1 cut(s)	456
RseI	CAYNNNNRTG	2 cut(s)	233, 777
SacII	CCGCGG	1 cut(s)	890
SaqAI	TTAA	3 cut(s)	303, 483, 1055
SatI	GCNGC	4 cut(s)	91, 399, 570, 1224
Sau3AI	GATC	6 cut(s)	22, 253, 314, 516, 766, 1213
Sau96I	GGNCC	2 cut(s)	604, 986
ScaI	AGTACT	1 cut(s)	457
SchI	GAGTC	2 cut(s)	884, 1072
ScrFI	CCNGG	1 cut(s)	101
SfaNI	GCATC	2 cut(s)	284, 924
Sfr274I	CTCGAG	1 cut(s)	71
Sfr303I	CCGCGG	1 cut(s)	890
SgrBI	CCGCGG	1 cut(s)	890
SinI	GGWCC	1 cut(s)	604
SlaI	CTCGAG	1 cut(s)	71
SmiMI	CAYNNNNRTG	2 cut(s)	233, 777
SmlI	CTYRAG	2 cut(s)	71, 965
SmoI	CTYRAG	2 cut(s)	71, 965
SseBI	AGGCCT	1 cut(s)	66
SsiI	CCGC	8 cut(s)	88, 245, 312, 498, 539, 798, 887, 889
SspI	AATATT	1 cut(s)	725
SspMI	CTAG	3 cut(s)	62, 459, 584
StuI	AGGCCT	1 cut(s)	66
StyD4I	CCNGG	1 cut(s)	99
StyI	CCWWGG	3 cut(s)	164, 607, 982
TaaI	ACNGT	5 cut(s)	59, 436, 452, 536, 949
TaqI	TCGA	2 cut(s)	72, 825
TaqII	GACCGA	1 cut(s)	986
TatI	WGTACW	1 cut(s)	455
TfiI	GAWTC	5 cut(s)	143, 188, 238, 543, 961
Tru1I	TTAA	3 cut(s)	303, 483, 1055
Tru9I	TTAA	3 cut(s)	303, 483, 1055
TscAI	CASTG	2 cut(s)	391, 1216
TseI	GCWGC	4 cut(s)	90, 398, 569, 1223
TspDTI	ATGAA	7 cut(s)	251, 297, 396, 761, 761, 885, 1221
TspGWI	ACGGA	1 cut(s)	660
TspRI	CASTG	2 cut(s)	391, 1216
VpaK11BI	GGWCC	1 cut(s)	604
XagI	CCTNNNNNAGG	1 cut(s)	71
XapI	RAATTY	6 cut(s)	590, 651, 703, 893, 1015, 1247
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1133
XhoI	CTCGAG	1 cut(s)	71
XspI	CTAG	3 cut(s)	62, 459, 584
ZrmI	AGTACT	1 cut(s)	457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.