FvH4_3g03000

(E,E)-alpha-farnesene

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
1590747 .. 1593542
2796 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g03000.t1

Sequence Viewer

Length: 1752 bp
ATGGATTGTAGTAAGCAATTGCGAAATCCTCAAGCTGAGGAGCAGCAAATTCATCAATGGCAGACGAAATCCGAACTCTCTGCTTACTCTGTACATGATCAAAGTCGACGATCTGCGAATTACAAGCCGAATATCTGGAAGTATGATTTCCTTGAATCTCTTAACAGCAAATTTGATGGAGAATGTTATCTGATCCAGATGCAGAAGCTGATAAAAGATGTAAAGAAGTTGTTTGTTGAATGTAAGGAATCAGATGTAATAGCAAAGCTGGAGCTGATCGACAGCATCCGAAAAGTAGGCCTGAACAACCACTTTGAGCAGGAAATCAAGGCTGCCCTAGACGCCATAGCATCTGCTGAACTCGAAAACAACAGCAATCCCTGCATTAGTTCAGAGGGTGATCTCTATGCTGCTGCACTATTCTTTAAGATTCTCAGGCAGCAGGGTTATCAAGTTTCACAAGATATATTTGGTCGTTTTATGGATGAAATGGGTACATTAAAGAAGAGCACATCTGGGAATGTCAAAGGAATGATTGAACTTTTGGAGGCCTCAAACTTAGCTTTTGAAGGTGAAGATATCCTAGAGAAGGCTCAAGCTTTCTTAATCGCCACTCTCAGAGATACCAATACTATGTGGGATGAAATAGACAGTAGCATTTCCAAGCATGTGACTTGTTCCTTGGAGCTTTCATCACAAAGGAGAGTGCAGTGGTTTAACGTGAAATGGCACATCAAAGCCTACGAGAAAAACCGTACTAATCAACCCTACATGACCACTTTACTTGAGTTGGCTAAACTTAACTTCAACGAGGTTCAAGCCACACTCCAGAAAGATCTAAGGGAAGCATCCAAGTGGTGGTACAATCTGGGTCTCACAAAGAACTTGGACTTTGCAAGAGATAGAATGGTCGAATGCTTCATGTGTGCTGTGGGATTGGCTTTCGAGACAGATCACAAGTCTTTTAGAAAATGGCTGACCAAAGTTATCAATTTGATACTTATCATAGATGACGTTTATGATGTTTATGGCTCGTTGGAAGAGCTAAAACACTTCACCAGAGCTGTTGAAAGGTGGGATGTTATGGAAACTGAACAGCTTCCGGAGTGTATGAAGATCTGTTTCCAAGTACTCTACAACACAACTTGTGAAATTGCTAATGAAACTGAGGAGGAGAATGGGTGGAACCAAGTGTTACCTCAGCTATGCAAAGTGTGGGCAGATTTTTGTAAAGCACTGTTGGTGGAGGCAGAGTGGTACAATGAGGCCTACACACCATCCTTTGAAGAGTACCTTAGCAATGGTTACATTTCATCATCTGCTTCTCTTATTTTCACTCATGCATTCTTCGCCACAAAACATGAGGAAGGAGTAGATGATTCTCTGCACATGAATGAAGATCTTGTGTACAATATCTCGGTGATACTTCGACTCCTCAACGATCTGGGAACTTCTGCGGCCGAGCAAGAGAGAGGCGATGCTGCTTCATCAATCCTATGTTACAAGAGAGAAATGAATGTTTCAGAAGAAATAGCTCGAAAGAACATCAAAAGCATGATAGACAATGCATGGAAGAAAATAAATGAAAATTGCTTGACCAGAAATCCCAAAATATCTTCATCATACATCAACATTACCACAAATATTGCTCGCGTGGGGCACATCCTTTACCAAGATGGAGATGGATTTGGTGATCAAGAGCAAGGGACTCGGGCACTGATCCAATCTTTACTAGTTGAACCTCTCTCTTAA

Protein Analysis

584

Amino Acids

67.12

Weight (kDa)

5.04

Isoelectric Point (pI)

43.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 45 - 228 1.3e-41 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 289 - 526 2.8e-82 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 328 - 526 2.8e-54 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 858
AccI GTMKAC 1 cut(s) 106
AccII CGCG 1 cut(s) 1653
AccIII TCCGGA 1 cut(s) 1102
AciI CCGC 1 cut(s) 1457
AclWI GGATC 2 cut(s) 187, 1714
AcoI YGGCCR 1 cut(s) 1458
AcsI RAATTY 2 cut(s) 48, 170
AcyI GRCGYC 1 cut(s) 342
AfaI GTAC 8 cut(s) 93, 496, 757, 863, 1131, 1259, 1292, 1409
AfiI CCNNNNNNNGG 2 cut(s) 589, 858
AgsI TTSAA 9 cut(s) 155, 239, 539, 569, 808, 818, 1070, 1286, 1739
AhlI ACTAGT 1 cut(s) 1732
Alw21I GWGCWC 1 cut(s) 512
Alw26I GTCTC 2 cut(s) 878, 941
AlwI GGATC 2 cut(s) 187, 1714
AlwNI CAGNNNCTG 1 cut(s) 208
Ama87I CYCGRG 1 cut(s) 1710
Aor13HI TCCGGA 1 cut(s) 1102
AoxI GGCC 4 cut(s) 298, 549, 1266, 1458
ApeKI GCWGC 6 cut(s) 43, 332, 410, 413, 439, 1481
ApoI RAATTY 2 cut(s) 48, 170
Asp700I GAANNNNTTC 1 cut(s) 1098
AsuHPI GGTGA 5 cut(s) 410, 584, 1048, 1432, 1703
AvaI CYCGRG 1 cut(s) 1710
BaeGI GKGCMC 2 cut(s) 1662, 1717
Bbv12I GWGCWC 1 cut(s) 512
BbvCI CCTCAGC 2 cut(s) 36, 1200
BbvI GCAGC 6 cut(s) 55, 319, 397, 400, 451, 1468
BccI CCATC 4 cut(s) 170, 1285, 1670, 1676
BcgI CGANNNNNNTGC 4 cut(s) 62, 96, 1691, 1725
BclI TGATCA 2 cut(s) 97, 1693
BcoDI GTCTC 2 cut(s) 878, 941
BcuI ACTAGT 1 cut(s) 1732
BfaI CTAG 3 cut(s) 338, 584, 1733
BglII AGATCT 3 cut(s) 835, 1116, 1399
BisI GCNGC 7 cut(s) 44, 333, 411, 414, 440, 1458, 1482
BlsI GCNGC 7 cut(s) 45, 334, 412, 415, 441, 1459, 1483
BmcAI AGTACT 1 cut(s) 1131
BmeT110I CYCGRG 1 cut(s) 1710
BmiI GGNNCC 1 cut(s) 1187
BmsI GCATC 5 cut(s) 189, 294, 359, 857, 1468
BpmI CTGGAG 2 cut(s) 290, 812
Bpu10I CCTNAGC 3 cut(s) 36, 1200, 1295
BpuEI CTTGAG 3 cut(s) 15, 579, 806
BsaBI GATNNNNATC 1 cut(s) 1001
BsaHI GRCGYC 1 cut(s) 342
BsaI GGTCTC 1 cut(s) 878
BsaJI CCNNGG 1 cut(s) 681
BsaWI WCCGGW 1 cut(s) 1102
BsaXI ACNNNNNCTCC 6 cut(s) 1166, 1196, 1238, 1268, 1416, 1446
Bsc4I CCNNNNNNNGG 2 cut(s) 589, 858
Bse3DI GCAATG 1 cut(s) 1306
Bse8I GATNNNNATC 1 cut(s) 1001
BseAI TCCGGA 1 cut(s) 1102
BseDI CCNNGG 1 cut(s) 681
BseGI GGATG 7 cut(s) 285, 490, 646, 848, 1084, 1277, 1662
BseJI GATNNNNATC 1 cut(s) 1001
BseLI CCNNNNNNNGG 2 cut(s) 589, 858
BseMI GCAATG 1 cut(s) 1306
BseMII CTCAG 5 cut(s) 27, 448, 631, 1158, 1214
BseRI GAGGAG 4 cut(s) 53, 1184, 1187, 1424
BseSI GKGCMC 2 cut(s) 1662, 1717
BseX3I CGGCCG 1 cut(s) 1458
BseXI GCAGC 6 cut(s) 55, 319, 397, 400, 451, 1468
BsgI GTGCAG 3 cut(s) 399, 728, 1370
Bsh1236I CGCG 1 cut(s) 1653
Bsh1285I CGRYCG 1 cut(s) 1461
BshFI GGCC 4 cut(s) 300, 551, 1268, 1460
BsiEI CGRYCG 1 cut(s) 1461
BsiHKAI GWGCWC 1 cut(s) 512
BsiHKCI CYCGRG 1 cut(s) 1710
BsiSI CCGG 1 cut(s) 1103
BslFI GGGAC 1 cut(s) 1720
BslI CCNNNNNNNGG 2 cut(s) 589, 858
BsmAI GTCTC 2 cut(s) 878, 941
BsmFI GGGAC 1 cut(s) 1720
BsmI GAATGC 2 cut(s) 920, 1343
BsnI GGCC 4 cut(s) 300, 551, 1268, 1460
Bso31I GGTCTC 1 cut(s) 878
BsoBI CYCGRG 1 cut(s) 1710
Bsp1286I GDGCHC 3 cut(s) 512, 1662, 1717
Bsp13I TCCGGA 1 cut(s) 1102
Bsp1407I TGTACA 2 cut(s) 91, 1407
BspACI CCGC 1 cut(s) 1457
BspANI GGCC 4 cut(s) 300, 551, 1268, 1460
BspCNI CTCAG 5 cut(s) 28, 447, 630, 1159, 1213
BspEI TCCGGA 1 cut(s) 1102
BspFNI CGCG 1 cut(s) 1653
BspLI GGNNCC 1 cut(s) 1187
BspPI GGATC 2 cut(s) 187, 1714
BspQI GCTCTTC 2 cut(s) 500, 1035
BspTNI GGTCTC 1 cut(s) 878
BsrDI GCAATG 1 cut(s) 1306
BsrGI TGTACA 2 cut(s) 91, 1407
BssECI CCNNGG 1 cut(s) 681
BssNI GRCGYC 1 cut(s) 342
BssT1I CCWWGG 1 cut(s) 681
Bst4CI ACNGT 3 cut(s) 653, 755, 1239
Bst6I CTCTTC 3 cut(s) 500, 1035, 1281
BstACI GRCGYC 1 cut(s) 342
BstAPI GCANNNNNTGC 1 cut(s) 381
BstAUI TGTACA 2 cut(s) 91, 1407
BstC8I GCNNGC 1 cut(s) 1651
BstDEI CTNAG 8 cut(s) 36, 434, 559, 617, 839, 1167, 1200, 1295
BstENI CCTNNNNNAGG 1 cut(s) 587
BstF5I GGATG 7 cut(s) 285, 490, 646, 848, 1084, 1277, 1662
BstFNI CGCG 1 cut(s) 1653
BstMAI GTCTC 2 cut(s) 878, 941
BstMCI CGRYCG 1 cut(s) 1461
BstMWI GCNNNNNNNGC 3 cut(s) 341, 381, 1349
BstNSI RCATGY 1 cut(s) 671
BstSLI GKGCMC 2 cut(s) 1662, 1717
BstUI CGCG 1 cut(s) 1653
BstV1I GCAGC 6 cut(s) 55, 319, 397, 400, 451, 1468
BstX2I RGATCY 3 cut(s) 835, 1116, 1399
BstYI RGATCY 3 cut(s) 835, 1116, 1399
BstZI CGGCCG 1 cut(s) 1458
BsuRI GGCC 4 cut(s) 300, 551, 1268, 1460
BtgZI GCGATG 1 cut(s) 1491
BtsCI GGATG 7 cut(s) 285, 490, 646, 848, 1084, 1277, 1662
BtsI GCAGTG 1 cut(s) 716
BtsIMutI CAGTG 3 cut(s) 716, 1235, 1715
Cac8I GCNNGC 1 cut(s) 1651
CaiI CAGNNNCTG 1 cut(s) 208
CseI GACGC 1 cut(s) 350
Csp6I GTAC 8 cut(s) 92, 495, 756, 862, 1130, 1258, 1291, 1408
CspCI CAANNNNNGTGG 4 cut(s) 766, 801, 1627, 1662
CviAII CATG 9 cut(s) 95, 668, 772, 922, 1340, 1361, 1390, 1555, 1569
CviQI GTAC 8 cut(s) 92, 495, 756, 862, 1130, 1258, 1291, 1408
DdeI CTNAG 8 cut(s) 36, 434, 559, 617, 839, 1167, 1200, 1295
EaeI YGGCCR 1 cut(s) 1458
EagI CGGCCG 1 cut(s) 1458
Eam1104I CTCTTC 3 cut(s) 500, 1035, 1281
EarI CTCTTC 3 cut(s) 500, 1035, 1281
EclXI CGGCCG 1 cut(s) 1458
Eco130I CCWWGG 1 cut(s) 681
Eco147I AGGCCT 3 cut(s) 300, 551, 1268
Eco31I GGTCTC 1 cut(s) 878
Eco32I GATATC 1 cut(s) 580
Eco52I CGGCCG 1 cut(s) 1458
Eco88I CYCGRG 1 cut(s) 1710
EcoNI CCTNNNNNAGG 1 cut(s) 587
EcoRV GATATC 1 cut(s) 580
EcoT14I CCWWGG 1 cut(s) 681
EcoT22I ATGCAT 2 cut(s) 1345, 1570
ErhI CCWWGG 1 cut(s) 681
FaeI CATG 9 cut(s) 98, 671, 775, 925, 1343, 1364, 1393, 1558, 1572
FalI AAGNNNNNCTT 2 cut(s) 1278, 1310
FaqI GGGAC 1 cut(s) 1720
FatI CATG 9 cut(s) 94, 667, 771, 921, 1339, 1360, 1389, 1554, 1568
FbaI TGATCA 2 cut(s) 97, 1693
FblI GTMKAC 1 cut(s) 106
Fnu4HI GCNGC 7 cut(s) 44, 333, 411, 414, 440, 1458, 1482
FokI GGATG 7 cut(s) 272, 497, 653, 835, 1091, 1264, 1649
Fsp4HI GCNGC 7 cut(s) 44, 333, 411, 414, 440, 1458, 1482
FspBI CTAG 3 cut(s) 338, 584, 1733
GluI GCNGC 7 cut(s) 44, 333, 411, 414, 440, 1458, 1482
GsuI CTGGAG 2 cut(s) 290, 812
HaeIII GGCC 4 cut(s) 300, 551, 1268, 1460
HapII CCGG 1 cut(s) 1103
HgaI GACGC 1 cut(s) 350
Hin1I GRCGYC 1 cut(s) 342
Hin1II CATG 9 cut(s) 98, 671, 775, 925, 1343, 1364, 1393, 1558, 1572
HincII GTYRAC 1 cut(s) 107
HindII GTYRAC 1 cut(s) 107
HindIII AAGCTT 1 cut(s) 597
HinfI GANTC 6 cut(s) 155, 248, 430, 1379, 1431, 1708
HpaII CCGG 1 cut(s) 1103
HphI GGTGA 5 cut(s) 410, 584, 1048, 1432, 1703
Hpy166II GTNNAC 2 cut(s) 107, 1408
Hpy188I TCNGA 7 cut(s) 73, 192, 253, 290, 394, 620, 1525
Hpy188III TCNNGA 6 cut(s) 136, 196, 829, 946, 1103, 1697
Hpy8I GTNNAC 2 cut(s) 107, 1408
Hpy99I CGWCG 1 cut(s) 111
HpyAV CCTTC 3 cut(s) 563, 583, 1361
HpyCH4III ACNGT 3 cut(s) 653, 755, 1239
HpyCH4IV ACGT 2 cut(s) 720, 1014
HpyCH4V TGCA 9 cut(s) 202, 384, 416, 709, 896, 1209, 1343, 1387, 1568
HpyF10VI GCNNNNNNNGC 3 cut(s) 341, 381, 1349
HpyF3I CTNAG 8 cut(s) 36, 434, 559, 617, 839, 1167, 1200, 1295
HpySE526I ACGT 2 cut(s) 720, 1014
Hsp92I GRCGYC 1 cut(s) 342
Hsp92II CATG 9 cut(s) 98, 671, 775, 925, 1343, 1364, 1393, 1558, 1572
Kpn2I TCCGGA 1 cut(s) 1102
Ksp22I TGATCA 2 cut(s) 97, 1693
LguI GCTCTTC 2 cut(s) 500, 1035
LmnI GCTCC 3 cut(s) 40, 271, 685
Lsp1109I GCAGC 6 cut(s) 55, 319, 397, 400, 451, 1468
LweI GCATC 5 cut(s) 189, 294, 359, 857, 1468
MaeI CTAG 3 cut(s) 338, 584, 1733
MaeII ACGT 2 cut(s) 720, 1014
MaeIII GTNAC 4 cut(s) 670, 1194, 1304, 1499
MfeI CAATTG 1 cut(s) 17
MflI RGATCY 3 cut(s) 835, 1116, 1399
MhlI GDGCHC 3 cut(s) 512, 1662, 1717
MluCI AATT 7 cut(s) 17, 48, 118, 170, 991, 1152, 1588
MlyI GAGTC 2 cut(s) 1425, 1702
MmeI TCCRAC 1 cut(s) 1017
Mph1103I ATGCAT 2 cut(s) 1345, 1570
MroI TCCGGA 1 cut(s) 1102
MroXI GAANNNNTTC 1 cut(s) 1098
MseI TTAA 7 cut(s) 162, 426, 500, 605, 717, 801, 1750
MslI CAYNNNNRTG 2 cut(s) 853, 1392
MspI CCGG 1 cut(s) 1103
MunI CAATTG 1 cut(s) 17
Mva1269I GAATGC 2 cut(s) 920, 1343
MvnI CGCG 1 cut(s) 1653
MwoI GCNNNNNNNGC 3 cut(s) 341, 381, 1349
NlaIII CATG 9 cut(s) 98, 671, 775, 925, 1343, 1364, 1393, 1558, 1572
NlaIV GGNNCC 1 cut(s) 1187
NmeAIII GCCGAG 1 cut(s) 1486
NmuCI GTSAC 1 cut(s) 670
NsiI ATGCAT 2 cut(s) 1345, 1570
NspI RCATGY 1 cut(s) 671
PceI AGGCCT 3 cut(s) 300, 551, 1268
PciSI GCTCTTC 2 cut(s) 500, 1035
PctI GAATGC 2 cut(s) 920, 1343
PdmI GAANNNNTTC 1 cut(s) 1098
PfeI GAWTC 4 cut(s) 155, 248, 430, 1379
PflMI CCANNNNNTGG 1 cut(s) 858
PkrI GCNGC 7 cut(s) 45, 334, 412, 415, 441, 1459, 1483
PleI GAGTC 2 cut(s) 1425, 1702
PpsI GAGTC 2 cut(s) 1425, 1702
PspN4I GGNNCC 1 cut(s) 1187
PstNI CAGNNNCTG 1 cut(s) 208
PsuI RGATCY 3 cut(s) 835, 1116, 1399
RsaI GTAC 8 cut(s) 93, 496, 757, 863, 1131, 1259, 1292, 1409
RsaNI GTAC 8 cut(s) 92, 495, 756, 862, 1130, 1258, 1291, 1408
RseI CAYNNNNRTG 2 cut(s) 853, 1392
SalI GTCGAC 1 cut(s) 105
SapI GCTCTTC 2 cut(s) 500, 1035
SaqAI TTAA 7 cut(s) 162, 426, 500, 605, 717, 801, 1750
SatI GCNGC 7 cut(s) 44, 333, 411, 414, 440, 1458, 1482
ScaI AGTACT 1 cut(s) 1131
SchI GAGTC 2 cut(s) 1425, 1702
SduI GDGCHC 3 cut(s) 512, 1662, 1717
SfaNI GCATC 5 cut(s) 189, 294, 359, 857, 1468
SmiMI CAYNNNNRTG 2 cut(s) 853, 1392
SmlI CTYRAG 3 cut(s) 30, 594, 785
SmoI CTYRAG 3 cut(s) 30, 594, 785
SpeI ACTAGT 1 cut(s) 1732
Sse9I AATT 7 cut(s) 17, 48, 118, 170, 991, 1152, 1588
SseBI AGGCCT 3 cut(s) 300, 551, 1268
SsiI CCGC 1 cut(s) 1457
SspI AATATT 1 cut(s) 1645
SspMI CTAG 3 cut(s) 338, 584, 1733
StuI AGGCCT 3 cut(s) 300, 551, 1268
StyI CCWWGG 1 cut(s) 681
TaaI ACNGT 3 cut(s) 653, 755, 1239
TaiI ACGT 2 cut(s) 723, 1017
TaqI TCGA 7 cut(s) 106, 279, 363, 912, 945, 1429, 1537
TasI AATT 7 cut(s) 17, 48, 118, 170, 991, 1152, 1588
TatI WGTACW 3 cut(s) 91, 1129, 1407
TauI GCSGC 1 cut(s) 1460
TfiI GAWTC 4 cut(s) 155, 248, 430, 1379
Tru1I TTAA 7 cut(s) 162, 426, 500, 605, 717, 801, 1750
Tru9I TTAA 7 cut(s) 162, 426, 500, 605, 717, 801, 1750
TscAI CASTG 3 cut(s) 716, 1242, 1722
TseFI GTSAC 1 cut(s) 670
TseI GCWGC 6 cut(s) 43, 332, 410, 413, 439, 1481
Tsp45I GTSAC 1 cut(s) 670
TspRI CASTG 3 cut(s) 716, 1242, 1722
Van91I CCANNNNNTGG 1 cut(s) 858
XagI CCTNNNNNAGG 1 cut(s) 587
XapI RAATTY 2 cut(s) 48, 170
XceI RCATGY 1 cut(s) 671
XcmI CCANNNNNNNNNTGG 1 cut(s) 1679
XmiI GTMKAC 1 cut(s) 106
XmnI GAANNNNTTC 1 cut(s) 1098
XspI CTAG 3 cut(s) 338, 584, 1733
ZrmI AGTACT 1 cut(s) 1131
Zsp2I ATGCAT 2 cut(s) 1345, 1570
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.