Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002039

Physical Location & Seq

Genomic Coordinates Forward (+)

21019201 .. 21020622

Gene Structure 1422 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ56023

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGAATCTTCTGCTTCTGAAAATGAAAGAATCTTGGTGGTGGAACAATTTGGGTCTCAGTAAGAACTTGGACTTTGCAAGAGATAGACTGGTCGAATGTTTCATGTGTGCTGTGGGATTAGCTTTCGAGCTTGAGTACAAGTCCTTTAGAAAATGGATAACTAGAGTCGTCAATTTGATTCTCATCATCGATGACGTTTATGATGTTTATGACTCATTGGAAGAGCTAAAACATTTCACCGATGCTATTGAAAAGTGGGATATTAGGGAAACCGACAAGCTTCTGGAGTGTATGAAGATCTGTTTCCAAGTACTCTACAATCGTACTTGTGAAATTGCTTATGAAATTGAAGAGGAGAATGGTTGGAACCAAGTATTACTTCATTTGCAGAAAGTGATTTATGTAAAGCATTATTGGTGGAGGCAGAGTGGTACAATAAAGCCTACACACCGTCCTTTGAAGAGTACCTTAGCAATGGTTTCATCATTTACTTCGCTGATTTTGACTCATGCCTTCTTCTCTACAACACATGATGAAGGGATCAAAAACATGGCTGATTTTCTGCACAAGAATGAAGATCTTGTGTACAATATCTCTTTGATACTTCGACTCTTAAATGATCTAGGAACTTTTGCAAGAGGCAATGCTGCTTCATCAATCCTATGTTACATGAGAGAAGTGCATAGTTCAGAAGAAATAGCTCGTAAGCACATCAAAGGCAAGATAGACAATGCATGGAAGAAAATAAACGAAAAACGTTTCACTCAAGTGCCCGAAATATCTTCATTCATCAACATTACTACAAATATAGCTCGAGTTGGTCATAGCCTTTATCAAGATGGAGATGGATTTGGTGATCAAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006720 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009987 GO:0010333 GO:0010334 GO:0016829 GO:0016835 GO:0016838 GO:0042214 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0046246 GO:0051761 GO:0051762 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00909 ko01110 map00909 map01110

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

288

Amino Acids

33.8

Weight (kDa)

6.22

Isoelectric Point (pI)

43.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Terpene_synth_C	PF03936	16 - 248	1.1e-58	Terpene synthase family, metal binding domain
Terpene_syn_C_2	PF19086	56 - 248	1e-27	Terpene synthase family 2, C-terminal metal binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002039)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g03000
malus_domestica	MD10G1311000.v1.1
prunus_persica	Prupe.4G029900_v2.0.a1 Prupe.4G125200_v2.0.a1 Prupe.4G125300_v2.0.a1 Prupe.4G125300_v2.0.a1 Prupe.4G125500_v2.0.a1 Prupe.4G126400_v2.0.a1 Prupe.4G126600_v2.0.a1 Prupe.4G126600_v2.0.a1
pyrus_communis	pycom10g26190
rosa_chinensis	RchiOBHm_Chr1g0331201 RchiOBHm_Chr1g0331211 RchiOBHm_Chr5g0004591 RchiOBHm_Chr5g0004631 RchiOBHm_Chr5g0029171 RchiOBHm_Chr5g0029181 RchiOBHm_Chr5g0029221 RchiOBHm_Chr5g0029231
rosa_laevigata	RLG00000031243 RLG00000031247 RLG00000031248
rosa_multiflora	Rmu_sc0003758.1_g000015 Rmu_sc0005711.1_g000009 Rmu_sc0012347.1_g000002
rosa_roxburghii	Rroxscaffold_1G00070900 Rroxscaffold_1G00070960
rosa_rugosa	Rorug04G0412300 Rorug04G0412700 Rorug04G0412800 Rorug04G0412900 Rorug04G0413000
rosa_samantha	Rh1AG116200 Rh1DG120600 Rh5AG040400 Rh5BG039900 Rh5CG043700 Rh5CG044200 Rh5CG224800 Rh5DG039500 Rh5DG039600 Rh5DG040200
rosa_wichuraiana	Rw1G009340 Rw5G003880 Rw5G003920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	757
AclWI	GGATC	1 cut(s)	548
AfaI	GTAC	6 cut(s)	137, 312, 325, 433, 466, 587
AgsI	TTSAA	3 cut(s)	251, 350, 460
AjuI	GAANNNNNNNTTGG	2 cut(s)	363, 395
AleI	CACNNNNGTG	1 cut(s)	767
AluBI	AGCT	6 cut(s)	122, 130, 226, 280, 701, 812
AluI	AGCT	6 cut(s)	122, 130, 226, 280, 701, 812
Alw26I	GTCTC	1 cut(s)	59
AlwI	GGATC	1 cut(s)	548
Ama87I	CYCGRG	1 cut(s)	813
ApeKI	GCWGC	1 cut(s)	647
AsuHPI	GGTGA	2 cut(s)	229, 866
AvaI	CYCGRG	1 cut(s)	813
BaeGI	GKGCMC	1 cut(s)	774
BbvI	GCAGC	1 cut(s)	634
BccI	CCATC	2 cut(s)	833, 839
BclI	TGATCA	1 cut(s)	856
BcoDI	GTCTC	1 cut(s)	59
BfaI	CTAG	2 cut(s)	162, 623
BglII	AGATCT	2 cut(s)	297, 577
BisI	GCNGC	1 cut(s)	648
BlsI	GCNGC	1 cut(s)	649
BmcAI	AGTACT	1 cut(s)	312
BmeT110I	CYCGRG	1 cut(s)	813
BmiI	GGNNCC	1 cut(s)	368
BmsI	GCATC	1 cut(s)	232
BpmI	CTGGAG	1 cut(s)	305
Bpu10I	CCTNAGC	1 cut(s)	469
BpuEI	CTTGAG	2 cut(s)	152, 750
Bsa29I	ATCGAT	1 cut(s)	189
BsaBI	GATNNNNATC	1 cut(s)	182
BsaI	GGTCTC	1 cut(s)	59
BsaXI	ACNNNNNCTCC	2 cut(s)	412, 442
Bse1I	ACTGG	1 cut(s)	93
Bse3DI	GCAATG	2 cut(s)	480, 649
Bse8I	GATNNNNATC	1 cut(s)	182
BseCI	ATCGAT	1 cut(s)	189
BseJI	GATNNNNATC	1 cut(s)	182
BseMI	GCAATG	2 cut(s)	480, 649
BseMII	CTCAG	1 cut(s)	70
BseNI	ACTGG	1 cut(s)	93
BseRI	GAGGAG	1 cut(s)	368
BseSI	GKGCMC	1 cut(s)	774
BseXI	GCAGC	1 cut(s)	634
BsgI	GTGCAG	1 cut(s)	548
BshVI	ATCGAT	1 cut(s)	189
BsiHKCI	CYCGRG	1 cut(s)	813
BsmAI	GTCTC	1 cut(s)	59
Bso31I	GGTCTC	1 cut(s)	59
BsoBI	CYCGRG	1 cut(s)	813
Bsp1286I	GDGCHC	1 cut(s)	774
Bsp1407I	TGTACA	1 cut(s)	585
Bsp143I	GATC	5 cut(s)	297, 540, 577, 619, 856
BspCNI	CTCAG	1 cut(s)	69
BspDI	ATCGAT	1 cut(s)	189
BspLI	GGNNCC	1 cut(s)	368
BspPI	GGATC	1 cut(s)	548
BspQI	GCTCTTC	1 cut(s)	216
BspTNI	GGTCTC	1 cut(s)	59
BsrDI	GCAATG	2 cut(s)	480, 649
BsrGI	TGTACA	1 cut(s)	585
BsrI	ACTGG	1 cut(s)	93
BssMI	GATC	5 cut(s)	297, 540, 577, 619, 856
Bst4CI	ACNGT	1 cut(s)	452
Bst6I	CTCTTC	3 cut(s)	216, 345, 455
BstAUI	TGTACA	1 cut(s)	585
BstDEI	CTNAG	2 cut(s)	56, 469
BstKTI	GATC	5 cut(s)	300, 543, 580, 622, 859
BstMAI	GTCTC	1 cut(s)	59
BstMBI	GATC	5 cut(s)	297, 540, 577, 619, 856
BstSLI	GKGCMC	1 cut(s)	774
BstV1I	GCAGC	1 cut(s)	634
BstX2I	RGATCY	2 cut(s)	297, 577
BstYI	RGATCY	2 cut(s)	297, 577
Bsu15I	ATCGAT	1 cut(s)	189
BsuTUI	ATCGAT	1 cut(s)	189
ClaI	ATCGAT	1 cut(s)	189
Csp6I	GTAC	6 cut(s)	136, 311, 324, 432, 465, 586
CviAII	CATG	6 cut(s)	103, 509, 530, 550, 670, 735
CviJI	RGCY	9 cut(s)	122, 130, 226, 280, 442, 554, 701, 812, 828
CviKI_1	RGCY	9 cut(s)	122, 130, 226, 280, 442, 554, 701, 812, 828
CviQI	GTAC	6 cut(s)	136, 311, 324, 432, 465, 586
DdeI	CTNAG	2 cut(s)	56, 469
DpnI	GATC	5 cut(s)	299, 542, 579, 621, 858
DpnII	GATC	5 cut(s)	297, 540, 577, 619, 856
Eam1104I	CTCTTC	3 cut(s)	216, 345, 455
EarI	CTCTTC	3 cut(s)	216, 345, 455
Eco31I	GGTCTC	1 cut(s)	59
Eco88I	CYCGRG	1 cut(s)	813
EcoT22I	ATGCAT	1 cut(s)	736
FaeI	CATG	6 cut(s)	106, 512, 533, 553, 673, 738
FalI	AAGNNNNNCTT	4 cut(s)	363, 395, 452, 484
FatI	CATG	6 cut(s)	102, 508, 529, 549, 669, 734
FbaI	TGATCA	1 cut(s)	856
Fnu4HI	GCNGC	1 cut(s)	648
Fsp4HI	GCNGC	1 cut(s)	648
FspBI	CTAG	2 cut(s)	162, 623
GluI	GCNGC	1 cut(s)	648
GsuI	CTGGAG	1 cut(s)	305
Hin1II	CATG	6 cut(s)	106, 512, 533, 553, 673, 738
HindIII	AAGCTT	1 cut(s)	278
HinfI	GANTC	7 cut(s)	4, 29, 165, 178, 212, 505, 609
HphI	GGTGA	2 cut(s)	229, 866
Hpy166II	GTNNAC	1 cut(s)	586
Hpy188I	TCNGA	2 cut(s)	18, 691
Hpy188III	TCNNGA	3 cut(s)	284, 836, 860
Hpy8I	GTNNAC	1 cut(s)	586
HpyAV	CCTTC	2 cut(s)	523, 530
HpyCH4III	ACNGT	1 cut(s)	452
HpyCH4IV	ACGT	2 cut(s)	195, 757
HpyCH4V	TGCA	6 cut(s)	77, 388, 565, 635, 682, 734
HpyF3I	CTNAG	2 cut(s)	56, 469
HpySE526I	ACGT	2 cut(s)	195, 757
Hsp92II	CATG	6 cut(s)	106, 512, 533, 553, 673, 738
Ksp22I	TGATCA	1 cut(s)	856
Kzo9I	GATC	5 cut(s)	297, 540, 577, 619, 856
LguI	GCTCTTC	1 cut(s)	216
LpnPI	CCDG	2 cut(s)	74, 269
Lsp1109I	GCAGC	1 cut(s)	634
LweI	GCATC	1 cut(s)	232
MaeI	CTAG	2 cut(s)	162, 623
MaeII	ACGT	2 cut(s)	195, 757
MaeIII	GTNAC	1 cut(s)	665
MalI	GATC	5 cut(s)	299, 542, 579, 621, 858
MboI	GATC	5 cut(s)	297, 540, 577, 619, 856
MboII	GAAGA	9 cut(s)	233, 307, 362, 472, 508, 587, 704, 751, 774
MflI	RGATCY	2 cut(s)	297, 577
MhlI	GDGCHC	1 cut(s)	774
MluCI	AATT	4 cut(s)	46, 172, 333, 345
MlyI	GAGTC	4 cut(s)	174, 206, 499, 603
MmeI	TCCRAC	1 cut(s)	344
MnlI	CCTC	3 cut(s)	346, 414, 632
Mph1103I	ATGCAT	1 cut(s)	736
MseI	TTAA	1 cut(s)	614
MslI	CAYNNNNRTG	2 cut(s)	570, 767
NdeII	GATC	5 cut(s)	297, 540, 577, 619, 856
NlaIII	CATG	6 cut(s)	106, 512, 533, 553, 673, 738
NlaIV	GGNNCC	1 cut(s)	368
NsiI	ATGCAT	1 cut(s)	736
OliI	CACNNNNGTG	1 cut(s)	767
PaeR7I	CTCGAG	1 cut(s)	813
PciSI	GCTCTTC	1 cut(s)	216
PfeI	GAWTC	3 cut(s)	4, 29, 178
PkrI	GCNGC	1 cut(s)	649
PleI	GAGTC	4 cut(s)	173, 206, 499, 603
PpsI	GAGTC	4 cut(s)	173, 206, 499, 603
Psp1406I	AACGTT	1 cut(s)	757
PspN4I	GGNNCC	1 cut(s)	368
PspXI	VCTCGAGB	1 cut(s)	813
PsuI	RGATCY	2 cut(s)	297, 577
RsaI	GTAC	6 cut(s)	137, 312, 325, 433, 466, 587
RsaNI	GTAC	6 cut(s)	136, 311, 324, 432, 465, 586
RseI	CAYNNNNRTG	2 cut(s)	570, 767
SapI	GCTCTTC	1 cut(s)	216
SaqAI	TTAA	1 cut(s)	614
SatI	GCNGC	1 cut(s)	648
Sau3AI	GATC	5 cut(s)	297, 540, 577, 619, 856
ScaI	AGTACT	1 cut(s)	312
SchI	GAGTC	4 cut(s)	174, 206, 499, 603
SduI	GDGCHC	1 cut(s)	774
SetI	ASST	9 cut(s)	124, 132, 198, 228, 282, 470, 703, 760, 814
SfaNI	GCATC	1 cut(s)	232
Sfr274I	CTCGAG	1 cut(s)	813
SlaI	CTCGAG	1 cut(s)	813
SmiMI	CAYNNNNRTG	2 cut(s)	570, 767
SmlI	CTYRAG	3 cut(s)	131, 765, 813
SmoI	CTYRAG	3 cut(s)	131, 765, 813
Sse9I	AATT	4 cut(s)	46, 172, 333, 345
SspMI	CTAG	2 cut(s)	162, 623
TaaI	ACNGT	1 cut(s)	452
TaiI	ACGT	2 cut(s)	198, 760
TaqI	TCGA	5 cut(s)	93, 126, 189, 607, 814
TasI	AATT	4 cut(s)	46, 172, 333, 345
TatI	WGTACW	3 cut(s)	135, 310, 585
TfiI	GAWTC	3 cut(s)	4, 29, 178
Tru1I	TTAA	1 cut(s)	614
Tru9I	TTAA	1 cut(s)	614
TseI	GCWGC	1 cut(s)	647
XhoI	CTCGAG	1 cut(s)	813
XspI	CTAG	2 cut(s)	162, 623
ZrmI	AGTACT	1 cut(s)	312
Zsp2I	ATGCAT	1 cut(s)	736

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.