(E,E)-alpha-farnesene
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g03000 |
| malus_domestica | MD10G1311000.v1.1 |
| prunus_persica | Prupe.4G029900_v2.0.a1 Prupe.4G125200_v2.0.a1 Prupe.4G125300_v2.0.a1 Prupe.4G125300_v2.0.a1 Prupe.4G125500_v2.0.a1 Prupe.4G126400_v2.0.a1 Prupe.4G126600_v2.0.a1 Prupe.4G126600_v2.0.a1 |
| pyrus_communis | pycom10g26190 |
| rosa_chinensis | RchiOBHm_Chr1g0331201 RchiOBHm_Chr1g0331211 RchiOBHm_Chr5g0004591 RchiOBHm_Chr5g0004631 RchiOBHm_Chr5g0029171 RchiOBHm_Chr5g0029181 RchiOBHm_Chr5g0029221 RchiOBHm_Chr5g0029231 |
| rosa_laevigata | RLG00000031243 RLG00000031247 RLG00000031248 |
| rosa_multiflora | Rmu_sc0003758.1_g000015 Rmu_sc0005711.1_g000009 Rmu_sc0012347.1_g000002 |
| rosa_roxburghii | Rroxscaffold_1G00070900 Rroxscaffold_1G00070960 |
| rosa_rugosa | Rorug04G0412300 Rorug04G0412700 Rorug04G0412800 Rorug04G0412900 Rorug04G0413000 |
| rosa_samantha | Rh1AG116200 Rh1DG120600 Rh5AG040400 Rh5BG039900 Rh5CG043700 Rh5CG044200 Rh5CG224800 Rh5DG039500 Rh5DG039600 Rh5DG040200 |
| rosa_wichuraiana | Rw1G009340 Rw5G003880 Rw5G003920 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 196 |
| AfaI | GTAC | 2 cut(s) | 225, 312 |
| AgsI | TTSAA | 1 cut(s) | 164 |
| AluBI | AGCT | 4 cut(s) | 35, 139, 158, 193 |
| AluI | AGCT | 4 cut(s) | 35, 139, 158, 193 |
| Alw26I | GTCTC | 1 cut(s) | 48 |
| Aor13HI | TCCGGA | 1 cut(s) | 196 |
| ApeKI | GCWGC | 1 cut(s) | 190 |
| AsuHPI | GGTGA | 1 cut(s) | 142 |
| BbvI | GCAGC | 1 cut(s) | 202 |
| BcoDI | GTCTC | 1 cut(s) | 48 |
| BglII | AGATCT | 1 cut(s) | 210 |
| BisI | GCNGC | 1 cut(s) | 191 |
| BlsI | GCNGC | 1 cut(s) | 192 |
| BmcAI | AGTACT | 1 cut(s) | 225 |
| BmiI | GGNNCC | 1 cut(s) | 281 |
| BsaBI | GATNNNNATC | 1 cut(s) | 95 |
| BsaI | GGTCTC | 1 cut(s) | 48 |
| BsaWI | WCCGGW | 1 cut(s) | 196 |
| Bse8I | GATNNNNATC | 1 cut(s) | 95 |
| BseAI | TCCGGA | 1 cut(s) | 196 |
| BseGI | GGATG | 1 cut(s) | 178 |
| BseJI | GATNNNNATC | 1 cut(s) | 95 |
| BseMII | CTCAG | 1 cut(s) | 59 |
| BseRI | GAGGAG | 2 cut(s) | 278, 281 |
| BseXI | GCAGC | 1 cut(s) | 202 |
| BsiSI | CCGG | 1 cut(s) | 197 |
| BslFI | GGGAC | 1 cut(s) | 307 |
| BsmAI | GTCTC | 1 cut(s) | 48 |
| BsmFI | GGGAC | 1 cut(s) | 307 |
| Bso31I | GGTCTC | 1 cut(s) | 48 |
| Bsp13I | TCCGGA | 1 cut(s) | 196 |
| Bsp143I | GATC | 1 cut(s) | 210 |
| BspCNI | CTCAG | 1 cut(s) | 58 |
| BspEI | TCCGGA | 1 cut(s) | 196 |
| BspLI | GGNNCC | 1 cut(s) | 281 |
| BspQI | GCTCTTC | 1 cut(s) | 129 |
| BspTNI | GGTCTC | 1 cut(s) | 48 |
| BssMI | GATC | 1 cut(s) | 210 |
| Bst6I | CTCTTC | 1 cut(s) | 129 |
| BstDEI | CTNAG | 1 cut(s) | 45 |
| BstF5I | GGATG | 1 cut(s) | 178 |
| BstKTI | GATC | 1 cut(s) | 213 |
| BstMAI | GTCTC | 1 cut(s) | 48 |
| BstMBI | GATC | 1 cut(s) | 210 |
| BstV1I | GCAGC | 1 cut(s) | 202 |
| BstX2I | RGATCY | 1 cut(s) | 210 |
| BstYI | RGATCY | 1 cut(s) | 210 |
| BtsCI | GGATG | 1 cut(s) | 178 |
| BtsIMutI | CAGTG | 2 cut(s) | 53, 68 |
| Csp6I | GTAC | 2 cut(s) | 224, 311 |
| CviAII | CATG | 1 cut(s) | 16 |
| CviJI | RGCY | 5 cut(s) | 35, 139, 158, 193, 317 |
| CviKI_1 | RGCY | 5 cut(s) | 35, 139, 158, 193, 317 |
| CviQI | GTAC | 2 cut(s) | 224, 311 |
| DdeI | CTNAG | 1 cut(s) | 45 |
| DpnI | GATC | 1 cut(s) | 212 |
| DpnII | GATC | 1 cut(s) | 210 |
| Eam1104I | CTCTTC | 1 cut(s) | 129 |
| EarI | CTCTTC | 1 cut(s) | 129 |
| Eco31I | GGTCTC | 1 cut(s) | 48 |
| FaeI | CATG | 1 cut(s) | 19 |
| FaiI | YATR | 7 cut(s) | 17, 26, 101, 114, 123, 206, 331 |
| FaqI | GGGAC | 1 cut(s) | 307 |
| FatI | CATG | 1 cut(s) | 15 |
| Fnu4HI | GCNGC | 1 cut(s) | 191 |
| FokI | GGATG | 1 cut(s) | 185 |
| Fsp4HI | GCNGC | 1 cut(s) | 191 |
| GluI | GCNGC | 1 cut(s) | 191 |
| HapII | CCGG | 1 cut(s) | 197 |
| Hin1II | CATG | 1 cut(s) | 19 |
| HpaII | CCGG | 1 cut(s) | 197 |
| HphI | GGTGA | 1 cut(s) | 142 |
| Hpy188I | TCNGA | 1 cut(s) | 279 |
| Hpy188III | TCNNGA | 1 cut(s) | 197 |
| HpyAV | CCTTC | 1 cut(s) | 265 |
| HpyCH4IV | ACGT | 1 cut(s) | 128 |
| HpyCH4V | TGCA | 1 cut(s) | 51 |
| HpyF3I | CTNAG | 1 cut(s) | 45 |
| HpySE526I | ACGT | 1 cut(s) | 128 |
| Hsp92II | CATG | 1 cut(s) | 19 |
| Kpn2I | TCCGGA | 1 cut(s) | 196 |
| Kzo9I | GATC | 1 cut(s) | 210 |
| LguI | GCTCTTC | 1 cut(s) | 129 |
| LpnPI | CCDG | 1 cut(s) | 210 |
| Lsp1109I | GCAGC | 1 cut(s) | 202 |
| MaeII | ACGT | 1 cut(s) | 128 |
| MalI | GATC | 1 cut(s) | 212 |
| MboI | GATC | 1 cut(s) | 210 |
| MboII | GAAGA | 2 cut(s) | 146, 220 |
| MflI | RGATCY | 1 cut(s) | 210 |
| MluCI | AATT | 2 cut(s) | 85, 183 |
| MmeI | TCCRAC | 2 cut(s) | 111, 257 |
| MnlI | CCTC | 2 cut(s) | 256, 259 |
| MroI | TCCGGA | 1 cut(s) | 196 |
| MspI | CCGG | 1 cut(s) | 197 |
| NdeII | GATC | 1 cut(s) | 210 |
| NlaIII | CATG | 1 cut(s) | 19 |
| NlaIV | GGNNCC | 1 cut(s) | 281 |
| PciSI | GCTCTTC | 1 cut(s) | 129 |
| PkrI | GCNGC | 1 cut(s) | 192 |
| PspN4I | GGNNCC | 1 cut(s) | 281 |
| PsuI | RGATCY | 1 cut(s) | 210 |
| RsaI | GTAC | 2 cut(s) | 225, 312 |
| RsaNI | GTAC | 2 cut(s) | 224, 311 |
| SapI | GCTCTTC | 1 cut(s) | 129 |
| SatI | GCNGC | 1 cut(s) | 191 |
| Sau3AI | GATC | 1 cut(s) | 210 |
| ScaI | AGTACT | 1 cut(s) | 225 |
| SetI | ASST | 6 cut(s) | 37, 131, 141, 160, 170, 195 |
| SgeI | CNNG | 9 cut(s) | 28, 64, 139, 209, 233, 247, 252, 296, 326 |
| Sse9I | AATT | 2 cut(s) | 85, 183 |
| TaiI | ACGT | 1 cut(s) | 131 |
| TasI | AATT | 2 cut(s) | 85, 183 |
| TatI | WGTACW | 1 cut(s) | 223 |
| TscAI | CASTG | 2 cut(s) | 53, 75 |
| TseI | GCWGC | 1 cut(s) | 190 |
| TspDTI | ATGAA | 3 cut(s) | 4, 221, 318 |
| TspRI | CASTG | 2 cut(s) | 53, 75 |
| ZrmI | AGTACT | 1 cut(s) | 225 |