Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0002039

Physical Location & Seq

Genomic Coordinates Forward (+)

6849135 .. 6850934

Gene Structure 1800 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G125200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGATTCTAAAATAAATTTTCAAGCTAATGAGCGCCAAAGACGATCTGCCAATTACAAGCCAAATATTTGGAATGATGGTTTTCTTGAATCTCTGAACAACAAATACATTTCTGAGAATCTAATAGAAGATGTGAAGAATATGATGTTTGTTGAAACTGAAGATTTGATAGCTCAGTTGGAGCTGATTGACAGCATTGGAAAACTAGGCCTCACGAACCACTTTGAAAAGGAAATCAAGGAAGCCCTAGACACTGTTGAAAATAGCAACCCCTACATAACAGAGAACCTTTATGCTACTGCGTTGCACTTTAAGATCCTCAGGCAGCATGGCTATAAAGTATCACAAGATGTTTTTGGTGGCTTCATGGATGAGAAGGTTGCATTAAAGGAAAGCAATCTTTGGGATGTCAAAGGCATGCTTGAACTTTTGGAGGCCTCAAACCTGGCTTTTGAAGGCGAAAGGATCTTAGATGAGGCGAAAGCTTCCTCTACGGTAGCTCTCAGAGGTTTCGAAGTCTGGAATCTGGACAATAACCTTGCCAGGCAAGTGGTCCATTCTCTGGAGCTTTCATCACACCGAAGAGTAGGGTGGTTTAATGTCAAATGGCACATACACACCTATGAGAAAGACAATCACGCCAACACCATTTTATTACTTGAATTGGTTAAACTCAACTTTAACATGGTTCAAGCAGCACTGCAAAAAGATCTAAGGGAAGTATCCACAGATAGACCGGTCGAGTGCTTCATGCTTGCCGTGGGATTAAATTTCCATCCTGGCTACACATCTTTTAGAAATTTGTTTAGTAAAGTCATTAACTTGATTCTGATAATAGACGACGTTTATGACATTTATGGCTCATTGGAGGAGCTAAAGATCTTCACCAACGCCGTCGATAGGTGGGATGTTGGGGTAACTGAGCAGCTTTCAGAGTGTATGAAGACCTGTTTCCAAGTGCTCTACAACACTACTTGTGAATTTGCTCATGAAATTGAGGAGGAGAGTGGTTGGAATCTAGCATTACCTCATTTGAGCAAAGCGGTACTAGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006720 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009987 GO:0010333 GO:0010334 GO:0016829 GO:0016835 GO:0016838 GO:0042214 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0046246 GO:0051761 GO:0051762 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00909 ko01110 map00909 map01110

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

352

Amino Acids

40.43

Weight (kDa)

5.02

Isoelectric Point (pI)

39.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002039)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g03000
malus_domestica	MD10G1311000.v1.1
prunus_persica	Prupe.4G029900_v2.0.a1 Prupe.4G125200_v2.0.a1 Prupe.4G125300_v2.0.a1 Prupe.4G125300_v2.0.a1 Prupe.4G125500_v2.0.a1 Prupe.4G126400_v2.0.a1 Prupe.4G126600_v2.0.a1 Prupe.4G126600_v2.0.a1
pyrus_communis	pycom10g26190
rosa_chinensis	RchiOBHm_Chr1g0331201 RchiOBHm_Chr1g0331211 RchiOBHm_Chr5g0004591 RchiOBHm_Chr5g0004631 RchiOBHm_Chr5g0029171 RchiOBHm_Chr5g0029181 RchiOBHm_Chr5g0029221 RchiOBHm_Chr5g0029231
rosa_laevigata	RLG00000031243 RLG00000031247 RLG00000031248
rosa_multiflora	Rmu_sc0003758.1_g000015 Rmu_sc0005711.1_g000009 Rmu_sc0012347.1_g000002
rosa_roxburghii	Rroxscaffold_1G00070900 Rroxscaffold_1G00070960
rosa_rugosa	Rorug04G0412300 Rorug04G0412700 Rorug04G0412800 Rorug04G0412900 Rorug04G0413000
rosa_samantha	Rh1AG116200 Rh1DG120600 Rh5AG040400 Rh5BG039900 Rh5CG043700 Rh5CG044200 Rh5CG224800 Rh5DG039500 Rh5DG039600 Rh5DG040200
rosa_wichuraiana	Rw1G009340 Rw5G003880 Rw5G003920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	562
AciI	CCGC	1 cut(s)	1043
AclWI	GGATC	2 cut(s)	310, 473
AcsI	RAATTY	4 cut(s)	16, 769, 799, 980
AcuI	CTGAAG	1 cut(s)	180
AfaI	GTAC	1 cut(s)	1047
AfiI	CCNNNNNNNGG	2 cut(s)	562, 900
AgeI	ACCGGT	1 cut(s)	736
AgsI	TTSAA	9 cut(s)	23, 89, 155, 227, 260, 425, 455, 662, 692
AjnI	CCWGG	3 cut(s)	444, 542, 778
AluBI	AGCT	8 cut(s)	26, 173, 184, 485, 500, 568, 874, 928
AluI	AGCT	8 cut(s)	26, 173, 184, 485, 500, 568, 874, 928
Alw21I	GWGCWC	1 cut(s)	963
AlwI	GGATC	2 cut(s)	310, 473
AoxI	GGCC	2 cut(s)	208, 435
ApeKI	GCWGC	3 cut(s)	325, 695, 925
ApoI	RAATTY	4 cut(s)	16, 769, 799, 980
AsiGI	ACCGGT	1 cut(s)	736
AspLEI	GCGC	1 cut(s)	36
AspS9I	GGNCC	1 cut(s)	553
AsuHPI	GGTGA	1 cut(s)	877
AsuII	TTCGAA	1 cut(s)	513
AvaII	GGWCC	1 cut(s)	553
AxyI	CCTNAGG	1 cut(s)	320
BbsI	GAAGAC	1 cut(s)	950
Bbv12I	GWGCWC	1 cut(s)	963
BbvI	GCAGC	3 cut(s)	337, 707, 937
BccI	CCATC	2 cut(s)	71, 783
BceAI	ACGGC	2 cut(s)	743, 878
BciT130I	CCWGG	3 cut(s)	446, 544, 780
BciVI	GTATCC	1 cut(s)	733
BfaI	CTAG	5 cut(s)	206, 248, 1019, 1049, 1054
BfoI	RGCGCY	1 cut(s)	37
BfuI	GTATCC	1 cut(s)	733
BglII	AGATCT	2 cut(s)	709, 879
BisI	GCNGC	3 cut(s)	326, 696, 926
BlsI	GCNGC	3 cut(s)	327, 697, 927
Bme1390I	CCNGG	3 cut(s)	446, 544, 780
Bme18I	GGWCC	1 cut(s)	553
BmgT120I	GGNCC	1 cut(s)	553
BmrFI	CCNGG	3 cut(s)	446, 544, 780
BpiI	GAAGAC	1 cut(s)	950
BpmI	CTGGAG	1 cut(s)	584
Bpu14I	TTCGAA	1 cut(s)	513
BsaJI	CCNNGG	1 cut(s)	759
BsaWI	WCCGGW	1 cut(s)	736
Bsc4I	CCNNNNNNNGG	2 cut(s)	562, 900
Bse118I	RCCGGY	1 cut(s)	736
Bse21I	CCTNAGG	1 cut(s)	320
BseBI	CCWGG	3 cut(s)	446, 544, 780
BseDI	CCNNGG	1 cut(s)	759
BseGI	GGATG	4 cut(s)	376, 412, 775, 913
BseLI	CCNNNNNNNGG	2 cut(s)	562, 900
BseMII	CTCAG	5 cut(s)	105, 188, 334, 517, 912
BseRI	GAGGAG	3 cut(s)	884, 1013, 1016
BseXI	GCAGC	3 cut(s)	337, 707, 937
Bsh1285I	CGRYCG	1 cut(s)	741
BshFI	GGCC	2 cut(s)	210, 437
BshTI	ACCGGT	1 cut(s)	736
BsiEI	CGRYCG	1 cut(s)	741
BsiHKAI	GWGCWC	1 cut(s)	963
BsiSI	CCGG	1 cut(s)	737
BslI	CCNNNNNNNGG	2 cut(s)	562, 900
BsnI	GGCC	2 cut(s)	210, 437
Bsp119I	TTCGAA	1 cut(s)	513
Bsp1286I	GDGCHC	1 cut(s)	963
Bsp143I	GATC	5 cut(s)	44, 315, 465, 709, 879
BspACI	CCGC	1 cut(s)	1043
BspANI	GGCC	2 cut(s)	210, 437
BspCNI	CTCAG	5 cut(s)	106, 187, 333, 516, 913
BspHI	TCATGA	1 cut(s)	988
BspPI	GGATC	2 cut(s)	310, 473
BspT104I	TTCGAA	1 cut(s)	513
BsrFI	RCCGGY	1 cut(s)	736
BssAI	RCCGGY	1 cut(s)	736
BssECI	CCNNGG	1 cut(s)	759
BssMI	GATC	5 cut(s)	44, 315, 465, 709, 879
Bst2UI	CCWGG	3 cut(s)	446, 544, 780
Bst4CI	ACNGT	2 cut(s)	256, 496
Bst6I	CTCTTC	1 cut(s)	577
BstBI	TTCGAA	1 cut(s)	513
BstC8I	GCNNGC	2 cut(s)	419, 756
BstDEI	CTNAG	7 cut(s)	114, 174, 320, 469, 503, 713, 921
BstDSI	CCRYGG	1 cut(s)	759
BstF5I	GGATG	4 cut(s)	376, 412, 775, 913
BstH2I	RGCGCY	1 cut(s)	37
BstHHI	GCGC	1 cut(s)	36
BstKTI	GATC	5 cut(s)	47, 318, 468, 712, 882
BstMBI	GATC	5 cut(s)	44, 315, 465, 709, 879
BstMCI	CGRYCG	1 cut(s)	741
BstMWI	GCNNNNNNNGC	1 cut(s)	1049
BstNI	CCWGG	3 cut(s)	446, 544, 780
BstNSI	RCATGY	1 cut(s)	421
BstSCI	CCNGG	3 cut(s)	444, 542, 778
BstV1I	GCAGC	3 cut(s)	337, 707, 937
BstV2I	GAAGAC	1 cut(s)	950
BstX2I	RGATCY	4 cut(s)	315, 465, 709, 879
BstXI	CCANNNNNNTGG	2 cut(s)	69, 550
BstYI	RGATCY	4 cut(s)	315, 465, 709, 879
Bsu36I	CCTNAGG	1 cut(s)	320
BsuI	GTATCC	1 cut(s)	733
BsuRI	GGCC	2 cut(s)	210, 437
BtgI	CCRYGG	1 cut(s)	759
BtsCI	GGATG	4 cut(s)	376, 412, 775, 913
BtsI	GCAGTG	1 cut(s)	698
BtsIMutI	CAGTG	2 cut(s)	252, 698
Cac8I	GCNNGC	2 cut(s)	419, 756
CciI	TCATGA	1 cut(s)	988
CfoI	GCGC	1 cut(s)	36
Cfr10I	RCCGGY	1 cut(s)	736
Cfr13I	GGNCC	1 cut(s)	553
Csp6I	GTAC	1 cut(s)	1046
CspAI	ACCGGT	1 cut(s)	736
CviAII	CATG	6 cut(s)	329, 367, 418, 685, 751, 989
CviQI	GTAC	1 cut(s)	1046
DdeI	CTNAG	7 cut(s)	114, 174, 320, 469, 503, 713, 921
DpnI	GATC	5 cut(s)	46, 317, 467, 711, 881
DpnII	GATC	5 cut(s)	44, 315, 465, 709, 879
Eam1104I	CTCTTC	1 cut(s)	577
EarI	CTCTTC	1 cut(s)	577
Eco147I	AGGCCT	2 cut(s)	210, 437
Eco47I	GGWCC	1 cut(s)	553
Eco57I	CTGAAG	1 cut(s)	180
Eco81I	CCTNAGG	1 cut(s)	320
EcoRII	CCWGG	3 cut(s)	444, 542, 778
FaeI	CATG	6 cut(s)	332, 370, 421, 688, 754, 992
FalI	AAGNNNNNCTT	2 cut(s)	405, 437
FatI	CATG	6 cut(s)	328, 366, 417, 684, 750, 988
Fnu4HI	GCNGC	3 cut(s)	326, 696, 926
FokI	GGATG	4 cut(s)	383, 419, 762, 920
Fsp4HI	GCNGC	3 cut(s)	326, 696, 926
FspBI	CTAG	5 cut(s)	206, 248, 1019, 1049, 1054
GlaI	GCGC	1 cut(s)	35
GluI	GCNGC	3 cut(s)	326, 696, 926
GsuI	CTGGAG	1 cut(s)	584
HaeII	RGCGCY	1 cut(s)	37
HaeIII	GGCC	2 cut(s)	210, 437
HapII	CCGG	1 cut(s)	737
HhaI	GCGC	1 cut(s)	36
Hin1II	CATG	6 cut(s)	332, 370, 421, 688, 754, 992
Hin6I	GCGC	1 cut(s)	34
HinP1I	GCGC	1 cut(s)	34
HindIII	AAGCTT	1 cut(s)	483
HinfI	GANTC	6 cut(s)	5, 89, 118, 523, 826, 1015
HpaII	CCGG	1 cut(s)	737
HphI	GGTGA	1 cut(s)	877
Hpy188I	TCNGA	5 cut(s)	96, 115, 506, 831, 934
Hpy188III	TCNNGA	6 cut(s)	86, 214, 520, 527, 563, 989
Hpy99I	CGWCG	2 cut(s)	845, 899
HpyAV	CCTTC	2 cut(s)	370, 449
HpyCH4III	ACNGT	2 cut(s)	256, 496
HpyCH4IV	ACGT	1 cut(s)	843
HpyCH4V	TGCA	3 cut(s)	307, 383, 703
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1049
HpyF3I	CTNAG	7 cut(s)	114, 174, 320, 469, 503, 713, 921
HpySE526I	ACGT	1 cut(s)	843
Hsp92II	CATG	6 cut(s)	332, 370, 421, 688, 754, 992
HspAI	GCGC	1 cut(s)	34
Kzo9I	GATC	5 cut(s)	44, 315, 465, 709, 879
LmnI	GCTCC	3 cut(s)	181, 565, 871
Lsp1109I	GCAGC	3 cut(s)	337, 707, 937
MaeI	CTAG	5 cut(s)	206, 248, 1019, 1049, 1054
MaeII	ACGT	1 cut(s)	843
MaeIII	GTNAC	1 cut(s)	916
MalI	GATC	5 cut(s)	46, 317, 467, 711, 881
MboI	GATC	5 cut(s)	44, 315, 465, 709, 879
MboII	GAAGA	6 cut(s)	140, 148, 173, 594, 874, 955
MflI	RGATCY	4 cut(s)	315, 465, 709, 879
MhlI	GDGCHC	1 cut(s)	963
MluCI	AATT	7 cut(s)	16, 52, 662, 769, 799, 980, 993
MmeI	TCCRAC	2 cut(s)	159, 992
MseI	TTAA	7 cut(s)	312, 386, 597, 669, 681, 767, 819
MslI	CAYNNNNRTG	1 cut(s)	621
MspI	CCGG	1 cut(s)	737
MspR9I	CCNGG	3 cut(s)	446, 544, 780
MvaI	CCWGG	3 cut(s)	446, 544, 780
MwoI	GCNNNNNNNGC	1 cut(s)	1049
NdeII	GATC	5 cut(s)	44, 315, 465, 709, 879
NlaIII	CATG	6 cut(s)	332, 370, 421, 688, 754, 992
NspI	RCATGY	1 cut(s)	421
NspV	TTCGAA	1 cut(s)	513
PaeI	GCATGC	1 cut(s)	421
PagI	TCATGA	1 cut(s)	988
PceI	AGGCCT	2 cut(s)	210, 437
PfeI	GAWTC	6 cut(s)	5, 89, 118, 523, 826, 1015
PflMI	CCANNNNNTGG	1 cut(s)	562
PinAI	ACCGGT	1 cut(s)	736
PkrI	GCNGC	3 cut(s)	327, 697, 927
Psp6I	CCWGG	3 cut(s)	444, 542, 778
PspGI	CCWGG	3 cut(s)	444, 542, 778
PspPI	GGNCC	1 cut(s)	553
PsrI	GAACNNNNNNTAC	2 cut(s)	89, 121
PsuI	RGATCY	4 cut(s)	315, 465, 709, 879
RsaI	GTAC	1 cut(s)	1047
RsaNI	GTAC	1 cut(s)	1046
RseI	CAYNNNNRTG	1 cut(s)	621
SaqAI	TTAA	7 cut(s)	312, 386, 597, 669, 681, 767, 819
SatI	GCNGC	3 cut(s)	326, 696, 926
Sau3AI	GATC	5 cut(s)	44, 315, 465, 709, 879
Sau96I	GGNCC	1 cut(s)	553
ScrFI	CCNGG	3 cut(s)	446, 544, 780
SduI	GDGCHC	1 cut(s)	963
SfuI	TTCGAA	1 cut(s)	513
SinI	GGWCC	1 cut(s)	553
SmiMI	CAYNNNNRTG	1 cut(s)	621
SphI	GCATGC	1 cut(s)	421
Sse9I	AATT	7 cut(s)	16, 52, 662, 769, 799, 980, 993
SseBI	AGGCCT	2 cut(s)	210, 437
SsiI	CCGC	1 cut(s)	1043
SspI	AATATT	1 cut(s)	67
SspMI	CTAG	5 cut(s)	206, 248, 1019, 1049, 1054
StuI	AGGCCT	2 cut(s)	210, 437
StyD4I	CCNGG	3 cut(s)	444, 542, 778
TaaI	ACNGT	2 cut(s)	256, 496
TaiI	ACGT	1 cut(s)	846
TaqI	TCGA	3 cut(s)	513, 741, 897
TasI	AATT	7 cut(s)	16, 52, 662, 769, 799, 980, 993
TfiI	GAWTC	6 cut(s)	5, 89, 118, 523, 826, 1015
Tru1I	TTAA	7 cut(s)	312, 386, 597, 669, 681, 767, 819
Tru9I	TTAA	7 cut(s)	312, 386, 597, 669, 681, 767, 819
TscAI	CASTG	2 cut(s)	259, 705
TseI	GCWGC	3 cut(s)	325, 695, 925
TspDTI	ATGAA	5 cut(s)	355, 561, 739, 956, 1005
TspRI	CASTG	2 cut(s)	259, 705
Van91I	CCANNNNNTGG	1 cut(s)	562
VpaK11BI	GGWCC	1 cut(s)	553
XapI	RAATTY	4 cut(s)	16, 769, 799, 980
XceI	RCATGY	1 cut(s)	421
XspI	CTAG	5 cut(s)	206, 248, 1019, 1049, 1054

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.