Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005711.1

Orthogroup ID

OG0002039

Physical Location & Seq

Genomic Coordinates Forward (+)

63950 .. 66151

Gene Structure 2202 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005711.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1506 bp

atgtttgctgattgtaaggaatcagatttaataaccaagttggagttgcttgacagcatccaaaaactaggcctgaacaaccattttggaaaggaaatcaagaaagccctagacaccataacatctgttgaactcgaaaataacagcaatccatacattagttcaagaggtgatctctatgctgctgcactactctttaagattcttaggcagcatggttacaaagtttcacaagatatatttggtggtttgatggatgaaatgggtacattaaagaagaaaacatttggggatgtgaaaggaatgcttgaaatgttggaggcctcaaacctagctttagaaggtgaatatatcctagaggaggctaaagctttcttaatggtcactttcagagataccaatactaggtgtgatgatatagacaattgcattttcaagcatgtgatttataccctggagcttccatcacaaaggagagtgcagtggtttaatgtgcaatggcacatcaaatcctacgagaaagaccatactgatcaagccaacatgaccactttacttgagttggctaaacttaacttcaacatggttcaagccacactccaaaaagatctaagggaagtatccatgtggtggaacaatctaggtctcaataagaacttggactttgcaagagatagactggttgaatgtttcatgtgtgccgtgggattagctttcgagcctgagtacaagtcctttagaaaatggataactaaagtcatcaatttaattctcatcatcgatgatgtttatgatgtttatggctcattagaagagctaaaacatttcaccaatgctgttaaaaggtgggatattagggaaaccgagcagcttccggagtgtatgaagatctgtttccaagtactctacaatactacttgtgaaattgcttatgaaattgaggaggagaaaggttggaaccaatggggagatttctgtaaagcattattggtggaggcagagtggtacaataaggcctacacaccgtcctttgaagaacaccttagcaatggttgcatttcatcatctactttgctgatgttgactcatgccttcttctccatgacacgtgttgaaggggccaaaaacattgctgattttctgcacaagaatgaagatcttgtgtacaatatctctttgattgttcgactcttaaacgatctgggaacttctgtggctgagcaaaagagaggtgatgttgcttcatcaatcctatgttacatgagagaagcgaatgcttcagaagaaatagctcgaaagcacatcaaaggcatgatagacaatgcatggaagaaaataaacgaaaaatgcttcactcaaatgcctgaaatatcttcattcttcaacattatgacaaatatagctcgaattgggcatagcctttatcaagatggagatggatttggtgatcaagagcacgggactcgggcacagatccaatctttactagttgaacctctctcgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006720 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009987 GO:0010333 GO:0010334 GO:0016829 GO:0016835 GO:0016838 GO:0042214 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0046246 GO:0051761 GO:0051762 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00909 ko01110 map00909 map01110

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

501

Amino Acids

57.75

Weight (kDa)

5.24

Isoelectric Point (pI)

36.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002039)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g03000
malus_domestica	MD10G1311000.v1.1
prunus_persica	Prupe.4G029900_v2.0.a1 Prupe.4G125200_v2.0.a1 Prupe.4G125300_v2.0.a1 Prupe.4G125300_v2.0.a1 Prupe.4G125500_v2.0.a1 Prupe.4G126400_v2.0.a1 Prupe.4G126600_v2.0.a1 Prupe.4G126600_v2.0.a1
pyrus_communis	pycom10g26190
rosa_chinensis	RchiOBHm_Chr1g0331201 RchiOBHm_Chr1g0331211 RchiOBHm_Chr5g0004591 RchiOBHm_Chr5g0004631 RchiOBHm_Chr5g0029171 RchiOBHm_Chr5g0029181 RchiOBHm_Chr5g0029221 RchiOBHm_Chr5g0029231
rosa_laevigata	RLG00000031243 RLG00000031247 RLG00000031248
rosa_multiflora	Rmu_sc0003758.1_g000015 Rmu_sc0005711.1_g000009 Rmu_sc0012347.1_g000002
rosa_roxburghii	Rroxscaffold_1G00070900 Rroxscaffold_1G00070960
rosa_rugosa	Rorug04G0412300 Rorug04G0412700 Rorug04G0412800 Rorug04G0412900 Rorug04G0413000
rosa_samantha	Rh1AG116200 Rh1DG120600 Rh5AG040400 Rh5BG039900 Rh5CG043700 Rh5CG044200 Rh5CG224800 Rh5DG039500 Rh5DG039600 Rh5DG040200
rosa_wichuraiana	Rw1G009340 Rw5G003880 Rw5G003920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	630
AccIII	TCCGGA	1 cut(s)	874
AclWI	GGATC	1 cut(s)	1468
AcuI	CTGAAG	1 cut(s)	1263
AcvI	CACGTG	1 cut(s)	1109
AfaI	GTAC	5 cut(s)	268, 728, 903, 1007, 1166
AfiI	CCNNNNNNNGG	3 cut(s)	361, 405, 630
AflIII	ACRYGT	2 cut(s)	1106, 1108
AhlI	ACTAGT	1 cut(s)	1486
AjnI	CCWGG	1 cut(s)	453
AluBI	AGCT	8 cut(s)	335, 371, 460, 713, 817, 871, 1292, 1403
AluI	AGCT	8 cut(s)	335, 371, 460, 713, 817, 871, 1292, 1403
Alw21I	GWGCWC	1 cut(s)	1458
Alw26I	GTCTC	1 cut(s)	650
AlwI	GGATC	1 cut(s)	1468
Ama87I	CYCGRG	1 cut(s)	1464
Aor13HI	TCCGGA	1 cut(s)	874
AoxI	GGCC	4 cut(s)	70, 321, 1014, 1119
ApeKI	GCWGC	4 cut(s)	182, 185, 211, 868
AspS9I	GGNCC	1 cut(s)	1119
AsuHPI	GGTGA	5 cut(s)	182, 356, 820, 1244, 1457
AvaI	CYCGRG	1 cut(s)	1464
BaeGI	GKGCMC	1 cut(s)	1471
BauI	CACGAG	1 cut(s)	1501
BbrPI	CACGTG	1 cut(s)	1109
Bbv12I	GWGCWC	1 cut(s)	1458
BbvI	GCAGC	4 cut(s)	169, 172, 223, 880
BccI	CCATC	4 cut(s)	247, 472, 1424, 1430
BceAI	ACGGC	1 cut(s)	686
BcgI	CGANNNNNNTGC	2 cut(s)	1445, 1479
BciT130I	CCWGG	1 cut(s)	455
BciVI	GTATCC	1 cut(s)	631
BclI	TGATCA	2 cut(s)	532, 1447
BcoDI	GTCTC	1 cut(s)	650
BcuI	ACTAGT	1 cut(s)	1486
BfaI	CTAG	7 cut(s)	68, 110, 332, 356, 405, 641, 1487
BfuI	GTATCC	1 cut(s)	631
BglII	AGATCT	3 cut(s)	607, 888, 1156
BisI	GCNGC	4 cut(s)	183, 186, 212, 869
BlpI	GCTNAGC	1 cut(s)	1218
BlsI	GCNGC	4 cut(s)	184, 187, 213, 870
BmcAI	AGTACT	1 cut(s)	903
Bme1390I	CCNGG	1 cut(s)	455
BmeT110I	CYCGRG	1 cut(s)	1464
BmgT120I	GGNCC	1 cut(s)	1119
BmiI	GGNNCC	2 cut(s)	959, 1120
BmrFI	CCNGG	1 cut(s)	455
BmsI	GCATC	1 cut(s)	66
BplI	GAGNNNNNCTC	2 cut(s)	159, 191
BpmI	CTGGAG	1 cut(s)	476
Bpu10I	CCTNAGC	1 cut(s)	1043
Bpu1102I	GCTNAGC	1 cut(s)	1218
BpuEI	CTTGAG	1 cut(s)	578
Bsa29I	ATCGAT	1 cut(s)	780
BsaAI	YACGTR	1 cut(s)	1109
BsaI	GGTCTC	1 cut(s)	650
BsaJI	CCNNGG	2 cut(s)	453, 702
BsaWI	WCCGGW	1 cut(s)	874
BsaXI	ACNNNNNCTCC	2 cut(s)	986, 1016
Bsc4I	CCNNNNNNNGG	3 cut(s)	361, 405, 630
Bse1I	ACTGG	1 cut(s)	684
Bse3DI	GCAATG	3 cut(s)	503, 1054, 1128
BseAI	TCCGGA	1 cut(s)	874
BseBI	CCWGG	1 cut(s)	455
BseCI	ATCGAT	1 cut(s)	780
BseDI	CCNNGG	2 cut(s)	453, 702
BseGI	GGATG	3 cut(s)	57, 262, 298
BseLI	CCNNNNNNNGG	3 cut(s)	361, 405, 630
BseMI	GCAATG	3 cut(s)	503, 1054, 1128
BseMII	CTCAG	2 cut(s)	714, 1209
BseNI	ACTGG	1 cut(s)	684
BseRI	GAGGAG	3 cut(s)	374, 956, 959
BseSI	GKGCMC	1 cut(s)	1471
BseXI	GCAGC	4 cut(s)	169, 172, 223, 880
BsgI	GTGCAG	3 cut(s)	171, 500, 1127
BshFI	GGCC	4 cut(s)	72, 323, 1016, 1121
BshVI	ATCGAT	1 cut(s)	780
BsiHKAI	GWGCWC	1 cut(s)	1458
BsiHKCI	CYCGRG	1 cut(s)	1464
BsiSI	CCGG	1 cut(s)	875
BslFI	GGGAC	1 cut(s)	1474
BslI	CCNNNNNNNGG	3 cut(s)	361, 405, 630
BsmAI	GTCTC	1 cut(s)	650
BsmFI	GGGAC	1 cut(s)	1474
BsmI	GAATGC	2 cut(s)	309, 1279
BsnI	GGCC	4 cut(s)	72, 323, 1016, 1121
Bso31I	GGTCTC	1 cut(s)	650
BsoBI	CYCGRG	1 cut(s)	1464
Bsp1286I	GDGCHC	2 cut(s)	1458, 1471
Bsp13I	TCCGGA	1 cut(s)	874
Bsp1407I	TGTACA	1 cut(s)	1164
Bsp143I	GATC	8 cut(s)	172, 532, 607, 888, 1156, 1198, 1447, 1473
Bsp1720I	GCTNAGC	1 cut(s)	1218
BspANI	GGCC	4 cut(s)	72, 323, 1016, 1121
BspCNI	CTCAG	2 cut(s)	715, 1210
BspDI	ATCGAT	1 cut(s)	780
BspEI	TCCGGA	1 cut(s)	874
BspLI	GGNNCC	2 cut(s)	959, 1120
BspPI	GGATC	1 cut(s)	1468
BspQI	GCTCTTC	1 cut(s)	807
BspTNI	GGTCTC	1 cut(s)	650
BsrDI	GCAATG	3 cut(s)	503, 1054, 1128
BsrGI	TGTACA	1 cut(s)	1164
BsrI	ACTGG	1 cut(s)	684
BssECI	CCNNGG	2 cut(s)	453, 702
BssMI	GATC	8 cut(s)	172, 532, 607, 888, 1156, 1198, 1447, 1473
BssSI	CACGAG	1 cut(s)	1501
Bst2BI	CACGAG	1 cut(s)	1501
Bst2UI	CCWGG	1 cut(s)	455
Bst4CI	ACNGT	1 cut(s)	1026
Bst6I	CTCTTC	1 cut(s)	807
BstAPI	GCANNNNNTGC	1 cut(s)	1053
BstAUI	TGTACA	1 cut(s)	1164
BstBAI	YACGTR	1 cut(s)	1109
BstDEI	CTNAG	5 cut(s)	206, 611, 723, 1043, 1218
BstDSI	CCRYGG	1 cut(s)	702
BstENI	CCTNNNNNAGG	1 cut(s)	359
BstF5I	GGATG	3 cut(s)	57, 262, 298
BstKTI	GATC	8 cut(s)	175, 535, 610, 891, 1159, 1201, 1450, 1476
BstMAI	GTCTC	1 cut(s)	650
BstMBI	GATC	8 cut(s)	172, 532, 607, 888, 1156, 1198, 1447, 1473
BstMWI	GCNNNNNNNGC	1 cut(s)	1053
BstNI	CCWGG	1 cut(s)	455
BstNSI	RCATGY	1 cut(s)	443
BstSCI	CCNGG	1 cut(s)	453
BstSLI	GKGCMC	1 cut(s)	1471
BstV1I	GCAGC	4 cut(s)	169, 172, 223, 880
BstX2I	RGATCY	4 cut(s)	607, 888, 1156, 1473
BstYI	RGATCY	4 cut(s)	607, 888, 1156, 1473
Bsu15I	ATCGAT	1 cut(s)	780
BsuI	GTATCC	1 cut(s)	631
BsuRI	GGCC	4 cut(s)	72, 323, 1016, 1121
BsuTUI	ATCGAT	1 cut(s)	780
BtgI	CCRYGG	1 cut(s)	702
BtsCI	GGATG	3 cut(s)	57, 262, 298
BtsI	GCAGTG	1 cut(s)	488
BtsIMutI	CAGTG	1 cut(s)	488
Cfr13I	GGNCC	1 cut(s)	1119
ClaI	ATCGAT	1 cut(s)	780
Csp6I	GTAC	5 cut(s)	267, 727, 902, 1006, 1165
CspCI	CAANNNNNGTGG	2 cut(s)	538, 573
CviQI	GTAC	5 cut(s)	267, 727, 902, 1006, 1165
DdeI	CTNAG	5 cut(s)	206, 611, 723, 1043, 1218
DpnI	GATC	8 cut(s)	174, 534, 609, 890, 1158, 1200, 1449, 1475
DpnII	GATC	8 cut(s)	172, 532, 607, 888, 1156, 1198, 1447, 1473
Eam1104I	CTCTTC	1 cut(s)	807
EarI	CTCTTC	1 cut(s)	807
Eco147I	AGGCCT	3 cut(s)	72, 323, 1016
Eco31I	GGTCTC	1 cut(s)	650
Eco57I	CTGAAG	1 cut(s)	1263
Eco72I	CACGTG	1 cut(s)	1109
Eco88I	CYCGRG	1 cut(s)	1464
EcoNI	CCTNNNNNAGG	1 cut(s)	359
EcoRII	CCWGG	1 cut(s)	453
EcoT22I	ATGCAT	1 cut(s)	1327
FalI	AAGNNNNNCTT	4 cut(s)	291, 323, 1026, 1058
FaqI	GGGAC	1 cut(s)	1474
FbaI	TGATCA	2 cut(s)	532, 1447
Fnu4HI	GCNGC	4 cut(s)	183, 186, 212, 869
FokI	GGATG	3 cut(s)	44, 269, 305
Fsp4HI	GCNGC	4 cut(s)	183, 186, 212, 869
FspBI	CTAG	7 cut(s)	68, 110, 332, 356, 405, 641, 1487
GluI	GCNGC	4 cut(s)	183, 186, 212, 869
GsuI	CTGGAG	1 cut(s)	476
HaeIII	GGCC	4 cut(s)	72, 323, 1016, 1121
HapII	CCGG	1 cut(s)	875
HincII	GTYRAC	1 cut(s)	1083
HindII	GTYRAC	1 cut(s)	1083
HindIII	AAGCTT	1 cut(s)	369
HinfI	GANTC	5 cut(s)	20, 202, 1084, 1188, 1462
HpaII	CCGG	1 cut(s)	875
HphI	GGTGA	5 cut(s)	182, 356, 820, 1244, 1457
Hpy166II	GTNNAC	2 cut(s)	1083, 1165
Hpy188I	TCNGA	3 cut(s)	25, 392, 1282
Hpy188III	TCNNGA	6 cut(s)	100, 165, 875, 1427, 1451, 1503
Hpy8I	GTNNAC	2 cut(s)	1083, 1165
HpyAV	CCTTC	3 cut(s)	335, 1102, 1109
HpyCH4III	ACNGT	1 cut(s)	1026
HpyCH4IV	ACGT	1 cut(s)	1108
HpyCH4V	TGCA	8 cut(s)	188, 429, 481, 496, 668, 1056, 1144, 1325
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1053
HpyF3I	CTNAG	5 cut(s)	206, 611, 723, 1043, 1218
HpySE526I	ACGT	1 cut(s)	1108
Kpn2I	TCCGGA	1 cut(s)	874
Ksp22I	TGATCA	2 cut(s)	532, 1447
Kzo9I	GATC	8 cut(s)	172, 532, 607, 888, 1156, 1198, 1447, 1473
LguI	GCTCTTC	1 cut(s)	807
LmnI	GCTCC	1 cut(s)	457
LpnPI	CCDG	8 cut(s)	86, 440, 467, 665, 735, 888, 1187, 1377
Lsp1109I	GCAGC	4 cut(s)	169, 172, 223, 880
LweI	GCATC	1 cut(s)	66
MaeI	CTAG	7 cut(s)	68, 110, 332, 356, 405, 641, 1487
MaeII	ACGT	1 cut(s)	1108
MaeIII	GTNAC	3 cut(s)	218, 382, 1256
MalI	GATC	8 cut(s)	174, 534, 609, 890, 1158, 1200, 1449, 1475
MboI	GATC	8 cut(s)	172, 532, 607, 888, 1156, 1198, 1447, 1473
MfeI	CAATTG	1 cut(s)	424
MflI	RGATCY	4 cut(s)	607, 888, 1156, 1473
MhlI	GDGCHC	2 cut(s)	1458, 1471
MluCI	AATT	6 cut(s)	424, 763, 768, 924, 936, 1407
MlyI	GAGTC	3 cut(s)	1078, 1182, 1456
MmeI	TCCRAC	3 cut(s)	21, 297, 935
Mph1103I	ATGCAT	1 cut(s)	1327
MroI	TCCGGA	1 cut(s)	874
MseI	TTAA	9 cut(s)	29, 198, 272, 377, 489, 573, 767, 840, 1193
MslI	CAYNNNNRTG	2 cut(s)	1149, 1358
MspI	CCGG	1 cut(s)	875
MspR9I	CCNGG	1 cut(s)	455
MunI	CAATTG	1 cut(s)	424
Mva1269I	GAATGC	2 cut(s)	309, 1279
MvaI	CCWGG	1 cut(s)	455
MwoI	GCNNNNNNNGC	1 cut(s)	1053
NdeII	GATC	8 cut(s)	172, 532, 607, 888, 1156, 1198, 1447, 1473
NlaIV	GGNNCC	2 cut(s)	959, 1120
NmuCI	GTSAC	1 cut(s)	382
NsiI	ATGCAT	1 cut(s)	1327
NspI	RCATGY	1 cut(s)	443
PceI	AGGCCT	3 cut(s)	72, 323, 1016
PciSI	GCTCTTC	1 cut(s)	807
PctI	GAATGC	2 cut(s)	309, 1279
PfeI	GAWTC	2 cut(s)	20, 202
PflMI	CCANNNNNTGG	1 cut(s)	630
PkrI	GCNGC	4 cut(s)	184, 187, 213, 870
PleI	GAGTC	3 cut(s)	1078, 1182, 1456
PmaCI	CACGTG	1 cut(s)	1109
PmlI	CACGTG	1 cut(s)	1109
PpsI	GAGTC	3 cut(s)	1078, 1182, 1456
Ppu21I	YACGTR	1 cut(s)	1109
Psp6I	CCWGG	1 cut(s)	453
PspCI	CACGTG	1 cut(s)	1109
PspGI	CCWGG	1 cut(s)	453
PspN4I	GGNNCC	2 cut(s)	959, 1120
PspPI	GGNCC	1 cut(s)	1119
PsuI	RGATCY	4 cut(s)	607, 888, 1156, 1473
RsaI	GTAC	5 cut(s)	268, 728, 903, 1007, 1166
RsaNI	GTAC	5 cut(s)	267, 727, 902, 1006, 1165
RseI	CAYNNNNRTG	2 cut(s)	1149, 1358
SapI	GCTCTTC	1 cut(s)	807
SaqAI	TTAA	9 cut(s)	29, 198, 272, 377, 489, 573, 767, 840, 1193
SatI	GCNGC	4 cut(s)	183, 186, 212, 869
Sau3AI	GATC	8 cut(s)	172, 532, 607, 888, 1156, 1198, 1447, 1473
Sau96I	GGNCC	1 cut(s)	1119
ScaI	AGTACT	1 cut(s)	903
SchI	GAGTC	3 cut(s)	1078, 1182, 1456
ScrFI	CCNGG	1 cut(s)	455
SduI	GDGCHC	2 cut(s)	1458, 1471
SfaNI	GCATC	1 cut(s)	66
SmiMI	CAYNNNNRTG	2 cut(s)	1149, 1358
SmlI	CTYRAG	1 cut(s)	557
SmoI	CTYRAG	1 cut(s)	557
SpeI	ACTAGT	1 cut(s)	1486
Sse9I	AATT	6 cut(s)	424, 763, 768, 924, 936, 1407
SseBI	AGGCCT	3 cut(s)	72, 323, 1016
SspMI	CTAG	7 cut(s)	68, 110, 332, 356, 405, 641, 1487
StuI	AGGCCT	3 cut(s)	72, 323, 1016
StyD4I	CCNGG	1 cut(s)	453
TaaI	ACNGT	1 cut(s)	1026
TaiI	ACGT	1 cut(s)	1111
TaqI	TCGA	6 cut(s)	135, 717, 780, 1186, 1294, 1405
TasI	AATT	6 cut(s)	424, 763, 768, 924, 936, 1407
TatI	WGTACW	3 cut(s)	726, 901, 1164
TfiI	GAWTC	2 cut(s)	20, 202
Tru1I	TTAA	9 cut(s)	29, 198, 272, 377, 489, 573, 767, 840, 1193
Tru9I	TTAA	9 cut(s)	29, 198, 272, 377, 489, 573, 767, 840, 1193
TscAI	CASTG	1 cut(s)	488
TseFI	GTSAC	1 cut(s)	382
TseI	GCWGC	4 cut(s)	182, 185, 211, 868
Tsp45I	GTSAC	1 cut(s)	382
TspDTI	ATGAA	8 cut(s)	273, 682, 899, 948, 1050, 1167, 1233, 1365
TspRI	CASTG	1 cut(s)	488
Van91I	CCANNNNNTGG	1 cut(s)	630
XagI	CCTNNNNNAGG	1 cut(s)	359
XceI	RCATGY	1 cut(s)	443
XspI	CTAG	7 cut(s)	68, 110, 332, 356, 405, 641, 1487
ZrmI	AGTACT	1 cut(s)	903
Zsp2I	ATGCAT	1 cut(s)	1327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.