Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002039

Physical Location & Seq

Genomic Coordinates Reverse (-)

57476193 .. 57477278

Gene Structure 1086 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0412700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGAGATCGGGCCTTGGCATGTAAACTTAAACCATCATCATCGCGATCTTGATCATCAACCCTTTGTGCTTGAACCCAACCCCGGTTCTTGGAACCGGATTTTTGGACTTCTTTTCCTTGATAATCCAATAGGATCCGGGTTCAGCATCGCCTCGAGCAGTGAAGAAATCCCAAGAGACCAATTTTCGGTAGCTAAACACCTATACATTGCGATTACAAAGTTTATTGAACTTGATCTAATATTGTTTAGCTCTCGTCCACTGTATATAGCGGGCGAGAGCTATGCTGGCAAGTACGTGCCAGCAATTGGGTACTATATACTCAAGAAGAATGAAGAGTCCAATCATTTGGTTAATTTAGCTGGCGTAGCTATAGGAAATGGTTTGATAGACCCGGAGACTCAGGTGGGCACTCACGCAGACAATGCGTACTTTTCGGGCTTGATCAATGAGAAACAGAGGAGAGAGATGGAGATGTGTCAGAACGAGACAATCAGGCTAGCCAGATTGAAGCGATGGAGAGATGCGACCGATGCAAGGTACCGAGTTGTGGATATGCTGATTGACATGACAGGATTAGCCACATTGTTTGACTACTCCAAGAAAGCGCCTTACCACAAGACTCAATGGGTCACTGACTTTTTACACGATGAAAGGGTGAAGAGAATTATGAGTGTGGAGGAGTCCGCCGTGTTTAGAAATTGTAGCCATGTGGTGCAAGTTGCTTTGTATGATGATAACATGAAGAGTGTGAAGTACATGGTGGAGTTGTTGGTGAAGAGGAGCAAGGTGTTGTTGTATCAAGGGCAGTTTGATTTGTGGGATGGGGTGTTTTCGACTGCGGCGTGGGTGAAGACATTGCAATGGGAGGAGATTCAGAGATTTTTAGCGGCGGGGAGGAGGGTTTGGAGAGGGAGAGGGGATGAGCTTGCAGGGTATGTGCAGAAATGGAAGAGTTTGAGCAATGTTGTGGTTTCAAGAGCAGGGCATCTTGTGCCGGCTGACCAGCCATTGAACTCTCAGGCAATGATCGAAGGCTGGATTTTGGAAACAGGGTTGTTTAGCGACGATGAGCAATTGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006720 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009987 GO:0010333 GO:0010334 GO:0016829 GO:0016835 GO:0016838 GO:0042214 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0046246 GO:0051761 GO:0051762 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00909 ko01110 map00909 map01110

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

361

Amino Acids

41.44

Weight (kDa)

6.19

Isoelectric Point (pI)

40.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S10	PF00450	1 - 348	1.7e-71	Serine carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002039)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g03000
malus_domestica	MD10G1311000.v1.1
prunus_persica	Prupe.4G029900_v2.0.a1 Prupe.4G125200_v2.0.a1 Prupe.4G125300_v2.0.a1 Prupe.4G125300_v2.0.a1 Prupe.4G125500_v2.0.a1 Prupe.4G126400_v2.0.a1 Prupe.4G126600_v2.0.a1 Prupe.4G126600_v2.0.a1
pyrus_communis	pycom10g26190
rosa_chinensis	RchiOBHm_Chr1g0331201 RchiOBHm_Chr1g0331211 RchiOBHm_Chr5g0004591 RchiOBHm_Chr5g0004631 RchiOBHm_Chr5g0029171 RchiOBHm_Chr5g0029181 RchiOBHm_Chr5g0029221 RchiOBHm_Chr5g0029231
rosa_laevigata	RLG00000031243 RLG00000031247 RLG00000031248
rosa_multiflora	Rmu_sc0003758.1_g000015 Rmu_sc0005711.1_g000009 Rmu_sc0012347.1_g000002
rosa_roxburghii	Rroxscaffold_1G00070900 Rroxscaffold_1G00070960
rosa_rugosa	Rorug04G0412300 Rorug04G0412700 Rorug04G0412800 Rorug04G0412900 Rorug04G0413000
rosa_samantha	Rh1AG116200 Rh1DG120600 Rh5AG040400 Rh5BG039900 Rh5CG043700 Rh5CG044200 Rh5CG224800 Rh5DG039500 Rh5DG039600 Rh5DG040200
rosa_wichuraiana	Rw1G009340 Rw5G003880 Rw5G003920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	540
AccB1I	GGYRCC	1 cut(s)	540
AccB7I	CCANNNNNTGG	1 cut(s)	308
AccII	CGCG	1 cut(s)	45
AciI	CCGC	5 cut(s)	272, 687, 842, 890, 893
AclWI	GGATC	2 cut(s)	129, 142
AfaI	GTAC	5 cut(s)	296, 314, 431, 542, 758
AfiI	CCNNNNNNNGG	6 cut(s)	83, 90, 187, 308, 537, 550
AgsI	TTSAA	5 cut(s)	74, 230, 511, 978, 1015
AluBI	AGCT	6 cut(s)	194, 252, 282, 362, 371, 928
AluI	AGCT	6 cut(s)	194, 252, 282, 362, 371, 928
Alw26I	GTCTC	3 cut(s)	171, 392, 482
AlwI	GGATC	2 cut(s)	129, 142
Ama87I	CYCGRG	1 cut(s)	154
AoxI	GGCC	1 cut(s)	11
Asp718I	GGTACC	1 cut(s)	540
AspLEI	GCGC	1 cut(s)	610
AspS9I	GGNCC	1 cut(s)	11
AsuC2I	CCSGG	3 cut(s)	84, 139, 395
AsuHPI	GGTGA	3 cut(s)	670, 787, 862
AsuNHI	GCTAGC	1 cut(s)	499
AvaI	CYCGRG	1 cut(s)	154
BaeGI	GKGCMC	1 cut(s)	413
BamHI	GGATCC	1 cut(s)	134
BanI	GGYRCC	1 cut(s)	540
BbsI	GAAGAC	1 cut(s)	860
BccI	CCATC	4 cut(s)	42, 463, 510, 818
BceAI	ACGGC	1 cut(s)	674
BcgI	CGANNNNNNTGC	2 cut(s)	266, 300
BclI	TGATCA	2 cut(s)	52, 444
BcnI	CCSGG	3 cut(s)	84, 139, 395
BcoDI	GTCTC	3 cut(s)	171, 392, 482
BfaI	CTAG	1 cut(s)	500
BfmI	CTRYAG	1 cut(s)	372
BfoI	RGCGCY	1 cut(s)	611
BisI	GCNGC	2 cut(s)	843, 891
BlsI	GCNGC	2 cut(s)	844, 892
Bme1390I	CCNGG	3 cut(s)	84, 139, 395
BmeT110I	CYCGRG	1 cut(s)	154
BmgT120I	GGNCC	1 cut(s)	11
BmiI	GGNNCC	3 cut(s)	95, 136, 542
BmrFI	CCNGG	3 cut(s)	84, 139, 395
BmsI	GCATC	4 cut(s)	156, 514, 523, 997
BmtI	GCTAGC	1 cut(s)	503
BpiI	GAAGAC	1 cut(s)	860
BpuEI	CTTGAG	1 cut(s)	308
BpuMI	CCSGG	3 cut(s)	84, 139, 395
BsaAI	YACGTR	1 cut(s)	298
BsaBI	GATNNNNATC	1 cut(s)	51
BsaI	GGTCTC	1 cut(s)	171
BsaJI	CCNNGG	2 cut(s)	14, 82
BsaWI	WCCGGW	1 cut(s)	96
Bsc4I	CCNNNNNNNGG	6 cut(s)	83, 90, 187, 308, 537, 550
Bse118I	RCCGGY	1 cut(s)	997
Bse3DI	GCAATG	5 cut(s)	207, 857, 869, 970, 1032
Bse8I	GATNNNNATC	1 cut(s)	51
BseDI	CCNNGG	2 cut(s)	14, 82
BseGI	GGATG	2 cut(s)	829, 928
BseJI	GATNNNNATC	1 cut(s)	51
BseLI	CCNNNNNNNGG	6 cut(s)	83, 90, 187, 308, 537, 550
BseMI	GCAATG	5 cut(s)	207, 857, 869, 970, 1032
BseMII	CTCAG	2 cut(s)	416, 1034
BseRI	GAGGAG	5 cut(s)	475, 695, 796, 884, 913
BseSI	GKGCMC	1 cut(s)	413
BsgI	GTGCAG	1 cut(s)	962
Bsh1236I	CGCG	1 cut(s)	45
Bsh1285I	CGRYCG	1 cut(s)	531
BshFI	GGCC	1 cut(s)	13
BshNI	GGYRCC	1 cut(s)	540
BsiEI	CGRYCG	1 cut(s)	531
BsiHKCI	CYCGRG	1 cut(s)	154
BsiSI	CCGG	5 cut(s)	84, 97, 138, 395, 998
BslI	CCNNNNNNNGG	6 cut(s)	83, 90, 187, 308, 537, 550
BsmAI	GTCTC	3 cut(s)	171, 392, 482
BsnI	GGCC	1 cut(s)	13
Bso31I	GGTCTC	1 cut(s)	171
BsoBI	CYCGRG	1 cut(s)	154
Bsp1286I	GDGCHC	1 cut(s)	413
Bsp143I	GATC	7 cut(s)	6, 46, 52, 134, 235, 444, 1029
Bsp68I	TCGCGA	1 cut(s)	45
BspACI	CCGC	5 cut(s)	272, 687, 842, 890, 893
BspANI	GGCC	1 cut(s)	13
BspCNI	CTCAG	2 cut(s)	415, 1033
BspFNI	CGCG	1 cut(s)	45
BspLI	GGNNCC	3 cut(s)	95, 136, 542
BspOI	GCTAGC	1 cut(s)	503
BspPI	GGATC	2 cut(s)	129, 142
BspT107I	GGYRCC	1 cut(s)	540
BspTNI	GGTCTC	1 cut(s)	171
BsrDI	GCAATG	5 cut(s)	207, 857, 869, 970, 1032
BsrFI	RCCGGY	1 cut(s)	997
BssAI	RCCGGY	1 cut(s)	997
BssECI	CCNNGG	2 cut(s)	14, 82
BssMI	GATC	7 cut(s)	6, 46, 52, 134, 235, 444, 1029
BssT1I	CCWWGG	1 cut(s)	14
Bst4CI	ACNGT	1 cut(s)	264
Bst6I	CTCTTC	5 cut(s)	330, 656, 740, 773, 947
BstAPI	GCANNNNNTGC	2 cut(s)	425, 994
BstBAI	YACGTR	1 cut(s)	298
BstC8I	GCNNGC	7 cut(s)	274, 289, 303, 364, 501, 930, 999
BstDEI	CTNAG	2 cut(s)	402, 1020
BstF5I	GGATG	2 cut(s)	829, 928
BstFNI	CGCG	1 cut(s)	45
BstH2I	RGCGCY	1 cut(s)	611
BstHHI	GCGC	1 cut(s)	610
BstKTI	GATC	7 cut(s)	9, 49, 55, 137, 238, 447, 1032
BstMAI	GTCTC	3 cut(s)	171, 392, 482
BstMBI	GATC	7 cut(s)	6, 46, 52, 134, 235, 444, 1029
BstMCI	CGRYCG	1 cut(s)	531
BstMWI	GCNNNNNNNGC	5 cut(s)	288, 368, 425, 533, 994
BstNSI	RCATGY	1 cut(s)	23
BstSCI	CCNGG	3 cut(s)	82, 137, 393
BstSFI	CTRYAG	1 cut(s)	372
BstSLI	GKGCMC	1 cut(s)	413
BstUI	CGCG	1 cut(s)	45
BstV2I	GAAGAC	1 cut(s)	860
BstX2I	RGATCY	1 cut(s)	134
BstXI	CCANNNNNNTGG	1 cut(s)	349
BstYI	RGATCY	1 cut(s)	134
BsuRI	GGCC	1 cut(s)	13
BtgZI	GCGATG	3 cut(s)	26, 133, 529
BtsCI	GGATG	2 cut(s)	829, 928
BtsI	GCAGTG	1 cut(s)	166
BtsIMutI	CAGTG	3 cut(s)	166, 260, 633
BtuMI	TCGCGA	1 cut(s)	45
Cac8I	GCNNGC	7 cut(s)	274, 289, 303, 364, 501, 930, 999
CfoI	GCGC	1 cut(s)	610
Cfr10I	RCCGGY	1 cut(s)	997
Cfr13I	GGNCC	1 cut(s)	11
Csp6I	GTAC	5 cut(s)	295, 313, 430, 541, 757
CspCI	CAANNNNNGTGG	2 cut(s)	571, 606
CviAII	CATG	5 cut(s)	20, 568, 710, 742, 760
CviQI	GTAC	5 cut(s)	295, 313, 430, 541, 757
DdeI	CTNAG	2 cut(s)	402, 1020
DpnI	GATC	7 cut(s)	8, 48, 54, 136, 237, 446, 1031
DpnII	GATC	7 cut(s)	6, 46, 52, 134, 235, 444, 1029
Eam1104I	CTCTTC	5 cut(s)	330, 656, 740, 773, 947
EarI	CTCTTC	5 cut(s)	330, 656, 740, 773, 947
EciI	GGCGGA	1 cut(s)	676
Eco130I	CCWWGG	1 cut(s)	14
Eco31I	GGTCTC	1 cut(s)	171
Eco88I	CYCGRG	1 cut(s)	154
EcoT14I	CCWWGG	1 cut(s)	14
ErhI	CCWWGG	1 cut(s)	14
FaeI	CATG	5 cut(s)	23, 571, 713, 745, 763
FatI	CATG	5 cut(s)	19, 567, 709, 741, 759
FauI	CCCGC	2 cut(s)	265, 886
FbaI	TGATCA	2 cut(s)	52, 444
Fnu4HI	GCNGC	2 cut(s)	843, 891
FokI	GGATG	2 cut(s)	836, 935
Fsp4HI	GCNGC	2 cut(s)	843, 891
FspBI	CTAG	1 cut(s)	500
GlaI	GCGC	1 cut(s)	609
GluI	GCNGC	2 cut(s)	843, 891
HaeII	RGCGCY	1 cut(s)	611
HaeIII	GGCC	1 cut(s)	13
HapII	CCGG	5 cut(s)	84, 97, 138, 395, 998
HhaI	GCGC	1 cut(s)	610
Hin1II	CATG	5 cut(s)	23, 571, 713, 745, 763
Hin6I	GCGC	1 cut(s)	608
HinP1I	GCGC	1 cut(s)	608
HinfI	GANTC	5 cut(s)	338, 400, 622, 683, 874
HpaII	CCGG	5 cut(s)	84, 97, 138, 395, 998
HphI	GGTGA	3 cut(s)	670, 787, 862
Hpy166II	GTNNAC	2 cut(s)	25, 260
Hpy188I	TCNGA	3 cut(s)	483, 879, 1085
Hpy188III	TCNNGA	4 cut(s)	44, 50, 325, 978
Hpy8I	GTNNAC	2 cut(s)	25, 260
Hpy99I	CGWCG	1 cut(s)	1070
HpyAV	CCTTC	1 cut(s)	1028
HpyCH4III	ACNGT	1 cut(s)	264
HpyCH4IV	ACGT	1 cut(s)	297
HpyCH4V	TGCA	5 cut(s)	536, 718, 862, 932, 943
HpyF10VI	GCNNNNNNNGC	5 cut(s)	288, 368, 425, 533, 994
HpyF3I	CTNAG	2 cut(s)	402, 1020
HpySE526I	ACGT	1 cut(s)	297
Hsp92II	CATG	5 cut(s)	23, 571, 713, 745, 763
HspAI	GCGC	1 cut(s)	608
KpnI	GGTACC	1 cut(s)	544
KroI	GCCGGC	1 cut(s)	997
KroNI	GCCGGC	1 cut(s)	999
Ksp22I	TGATCA	2 cut(s)	52, 444
Kzo9I	GATC	7 cut(s)	6, 46, 52, 134, 235, 444, 1029
LmnI	GCTCC	1 cut(s)	783
LweI	GCATC	4 cut(s)	156, 514, 523, 997
MaeI	CTAG	1 cut(s)	500
MaeII	ACGT	1 cut(s)	297
MaeIII	GTNAC	1 cut(s)	631
MalI	GATC	7 cut(s)	8, 48, 54, 136, 237, 446, 1031
MboI	GATC	7 cut(s)	6, 46, 52, 134, 235, 444, 1029
MboII	GAAGA	8 cut(s)	176, 340, 347, 673, 757, 790, 865, 964
MfeI	CAATTG	2 cut(s)	306, 1076
MflI	RGATCY	1 cut(s)	134
MhlI	GDGCHC	1 cut(s)	413
MluCI	AATT	6 cut(s)	182, 306, 355, 666, 700, 1076
MlyI	GAGTC	4 cut(s)	347, 394, 616, 692
MnlI	CCTC	9 cut(s)	163, 453, 673, 774, 862, 891, 894, 905, 911
MroNI	GCCGGC	1 cut(s)	997
MseI	TTAA	2 cut(s)	29, 354
MslI	CAYNNNNRTG	1 cut(s)	862
MspI	CCGG	5 cut(s)	84, 97, 138, 395, 998
MspR9I	CCNGG	3 cut(s)	84, 139, 395
MunI	CAATTG	2 cut(s)	306, 1076
MvnI	CGCG	1 cut(s)	45
MwoI	GCNNNNNNNGC	5 cut(s)	288, 368, 425, 533, 994
NaeI	GCCGGC	1 cut(s)	999
NciI	CCSGG	3 cut(s)	84, 139, 395
NdeII	GATC	7 cut(s)	6, 46, 52, 134, 235, 444, 1029
NgoMIV	GCCGGC	1 cut(s)	997
NheI	GCTAGC	1 cut(s)	499
NlaIII	CATG	5 cut(s)	23, 571, 713, 745, 763
NlaIV	GGNNCC	3 cut(s)	95, 136, 542
NmuCI	GTSAC	1 cut(s)	631
NruI	TCGCGA	1 cut(s)	45
NspI	RCATGY	1 cut(s)	23
PaeR7I	CTCGAG	1 cut(s)	154
PcsI	WCGNNNNNNNCGW	1 cut(s)	842
PdiI	GCCGGC	1 cut(s)	999
PfeI	GAWTC	1 cut(s)	874
PflMI	CCANNNNNTGG	1 cut(s)	308
PkrI	GCNGC	2 cut(s)	844, 892
PleI	GAGTC	4 cut(s)	346, 394, 616, 691
PpsI	GAGTC	4 cut(s)	346, 394, 616, 691
Ppu21I	YACGTR	1 cut(s)	298
PspN4I	GGNNCC	3 cut(s)	95, 136, 542
PspPI	GGNCC	1 cut(s)	11
PspXI	VCTCGAGB	1 cut(s)	154
PsuI	RGATCY	1 cut(s)	134
RruI	TCGCGA	1 cut(s)	45
RsaI	GTAC	5 cut(s)	296, 314, 431, 542, 758
RsaNI	GTAC	5 cut(s)	295, 313, 430, 541, 757
RseI	CAYNNNNRTG	1 cut(s)	862
SaqAI	TTAA	2 cut(s)	29, 354
SatI	GCNGC	2 cut(s)	843, 891
Sau3AI	GATC	7 cut(s)	6, 46, 52, 134, 235, 444, 1029
Sau96I	GGNCC	1 cut(s)	11
SchI	GAGTC	4 cut(s)	347, 394, 616, 692
ScrFI	CCNGG	3 cut(s)	84, 139, 395
SduI	GDGCHC	1 cut(s)	413
SfaNI	GCATC	4 cut(s)	156, 514, 523, 997
SfcI	CTRYAG	1 cut(s)	372
Sfr274I	CTCGAG	1 cut(s)	154
SlaI	CTCGAG	1 cut(s)	154
SmiMI	CAYNNNNRTG	1 cut(s)	862
SmlI	CTYRAG	2 cut(s)	154, 323
SmoI	CTYRAG	2 cut(s)	154, 323
Sse9I	AATT	6 cut(s)	182, 306, 355, 666, 700, 1076
SsiI	CCGC	5 cut(s)	272, 687, 842, 890, 893
SspI	AATATT	1 cut(s)	243
SspMI	CTAG	1 cut(s)	500
StyD4I	CCNGG	3 cut(s)	82, 137, 393
StyI	CCWWGG	1 cut(s)	14
TaaI	ACNGT	1 cut(s)	264
TaiI	ACGT	1 cut(s)	300
TaqI	TCGA	3 cut(s)	155, 836, 1032
TaqII	GACCGA	1 cut(s)	545
TasI	AATT	6 cut(s)	182, 306, 355, 666, 700, 1076
TatI	WGTACW	1 cut(s)	756
TauI	GCSGC	2 cut(s)	845, 893
TfiI	GAWTC	1 cut(s)	874
Tru1I	TTAA	2 cut(s)	29, 354
Tru9I	TTAA	2 cut(s)	29, 354
TscAI	CASTG	3 cut(s)	166, 267, 640
TseFI	GTSAC	1 cut(s)	631
Tsp45I	GTSAC	1 cut(s)	631
TspDTI	ATGAA	3 cut(s)	348, 666, 758
TspRI	CASTG	3 cut(s)	166, 267, 640
Van91I	CCANNNNNTGG	1 cut(s)	308
XceI	RCATGY	1 cut(s)	23
XhoI	CTCGAG	1 cut(s)	154
XspI	CTAG	1 cut(s)	500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.