Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0002039

Physical Location & Seq

Genomic Coordinates Forward (+)

6884416 .. 6887017

Gene Structure 2602 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G125500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1635 bp

ATGGATTCTAAAACAAACTTTCAAGCCGATGAGCACCAACGACGATCTGCCAATTACAAGCCAAATATTTGGAAGGATGGTTTCCTTGAATCTCTGAACAACAAATACATTGGAGATGATTATTCAAGACAGTTTGAGAATCTAGTAAAAGATGTGAAGAATATGATGTTCGTCAAAACTGAAGATTTGACAGCTCAATTGGAGTTGATTGACAACATTGGAAAACTAGGCCTCACGAACCACTTTGAAAAGGAAATCAAGGAAGCCCTAGACACTGTTGAAAATAGCAACCCATGCATAACAGAGAACCTTTATGCTACTGCGTTGCACTTTAAGATCCTCAGGCAGCATGGCTATAAAGTATCGCAAGATGTTTTTGGTGGCTTCATGGATGAGAAGGGTGCATTAAAGGAAAGCAATTTTTGGGATGTCAAAGGCATGCTTGAACTTTTGGAGGCCACAAACCTGGCTTTTGAAGGTGAAAGGATCTTAGATGAGGCGAAAGCTTCCTCTACGGTAGCTCTCAGAGGTTCCAAAGTCTGGAATCTGGACAATAACCTTGCCAGGCAAGTGGTCCATGCTTTGGAGCTTCCATCACACCGAAGAGTAGGGTGGTTTAATGTCAAATGGCACATACACGCCTATGAGAAAGACAATCACGCCAACACCATTTTATTACTTGAATTGGCTAAACTCAACTTTAACATGGTTCAAGCAGCACTGCAAAACGATCTAAGGGAAGTATCCATGTGGTGGAACAATCTGGGCCTCAAAGAACACTTGAAGTTTGCGAGAGATAGACCGGTCGAGTGCTTCATGTTTGCTGTAGGATTAAACTTCCATCCTGGCTACACATCTTTTAGACTTTTGCTTAGTAAAGTTATCAACTTGATTCTGATAATAGACGACCTAAAGATCTTCACCAACGCTGTTGATAGGTGGGATGTTGGGGTAACTGAGCAGCTTCCAGAGTGTATGAAGACCTGTTTCCAAGTGCTCTACAACACTACTTGTGAATTTGCTCATGAAATTGAGGAGGAGATTGGTTGGAATCTGGCATTACCTCATTTGAGCAAAGCGTGGGCAGATTTCTGTAAAGCATTATTAGTAGAGGCAGAGTGGTACAGCAGGAGCTACACACCATCCCTTGAAGAATACCTCAGTAATGGATGCATTTCATCATCAGTTTCAGTCCTTATGGTTCATACATTTTTCTCCACAACCCATCGTGACGGAATCAAAGAGATTGCTGATTTTCTACACAAGAATGAAGATCTTGTGCATAACATATCTCTGATAGTTCGGCTCACCAATGATTTGGGAACTTCCACTGCTGAACAAGAGAGAGGCGATGCTCCTTCAGCAATCATATGTTACATGCGAGAGATGAATGCTTCTGAAGCTACAGCTGAGGCGAAGATTAAGGGCATGATAGACAATGCGTGGAAGAAAATAAATGGGACATGCTTGAGAACTCCACAACAAGTGCCTTTTCTCTCACCATTCATCAACAACATTGCCACAAATATTGCGCGAATGGCGCACAGCCTTTACCAAGCTGGAGATGGATTTGGTGATCAAGAACAAGGCTCTCGGCTGATCCAGTCTGTGCTAGTTGAGCCTTTACCACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006720 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009987 GO:0010333 GO:0010334 GO:0016829 GO:0016835 GO:0016838 GO:0042214 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0046246 GO:0051761 GO:0051762 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00909 ko01110 map00909 map01110

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

545

Amino Acids

62.05

Weight (kDa)

5.5

Isoelectric Point (pI)

36.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002039)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g03000
malus_domestica	MD10G1311000.v1.1
prunus_persica	Prupe.4G029900_v2.0.a1 Prupe.4G125200_v2.0.a1 Prupe.4G125300_v2.0.a1 Prupe.4G125300_v2.0.a1 Prupe.4G125500_v2.0.a1 Prupe.4G126400_v2.0.a1 Prupe.4G126600_v2.0.a1 Prupe.4G126600_v2.0.a1
pyrus_communis	pycom10g26190
rosa_chinensis	RchiOBHm_Chr1g0331201 RchiOBHm_Chr1g0331211 RchiOBHm_Chr5g0004591 RchiOBHm_Chr5g0004631 RchiOBHm_Chr5g0029171 RchiOBHm_Chr5g0029181 RchiOBHm_Chr5g0029221 RchiOBHm_Chr5g0029231
rosa_laevigata	RLG00000031243 RLG00000031247 RLG00000031248
rosa_multiflora	Rmu_sc0003758.1_g000015 Rmu_sc0005711.1_g000009 Rmu_sc0012347.1_g000002
rosa_roxburghii	Rroxscaffold_1G00070900 Rroxscaffold_1G00070960
rosa_rugosa	Rorug04G0412300 Rorug04G0412700 Rorug04G0412800 Rorug04G0412900 Rorug04G0413000
rosa_samantha	Rh1AG116200 Rh1DG120600 Rh5AG040400 Rh5BG039900 Rh5CG043700 Rh5CG044200 Rh5CG224800 Rh5DG039500 Rh5DG039600 Rh5DG040200
rosa_wichuraiana	Rw1G009340 Rw5G003880 Rw5G003920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	540, 583, 753
AccII	CGCG	1 cut(s)	1534
AclWI	GGATC	3 cut(s)	331, 494, 1594
AcsI	RAATTY	1 cut(s)	1016
AcuI	CTGAAG	3 cut(s)	201, 1344, 1419
AfaI	GTAC	1 cut(s)	1124
AfiI	CCNNNNNNNGG	3 cut(s)	540, 583, 753
AgeI	ACCGGT	1 cut(s)	802
AjnI	CCWGG	3 cut(s)	465, 563, 844
AluBI	AGCT	9 cut(s)	194, 506, 521, 589, 964, 1134, 1403, 1409, 1559
AluI	AGCT	9 cut(s)	194, 506, 521, 589, 964, 1134, 1403, 1409, 1559
Alw21I	GWGCWC	2 cut(s)	36, 999
AlwI	GGATC	3 cut(s)	331, 494, 1594
AoxI	GGCC	3 cut(s)	229, 456, 766
ApeKI	GCWGC	3 cut(s)	346, 716, 961
ApoI	RAATTY	1 cut(s)	1016
AsiGI	ACCGGT	1 cut(s)	802
AspLEI	GCGC	2 cut(s)	1534, 1543
AspS9I	GGNCC	2 cut(s)	574, 766
AsuHPI	GGTGA	5 cut(s)	491, 913, 1300, 1491, 1586
AvaII	GGWCC	1 cut(s)	574
AxyI	CCTNAGG	1 cut(s)	341
BbsI	GAAGAC	1 cut(s)	986
Bbv12I	GWGCWC	2 cut(s)	36, 999
BbvCI	CCTCAGC	1 cut(s)	1410
BbvI	GCAGC	3 cut(s)	358, 728, 973
BccI	CCATC	6 cut(s)	71, 601, 849, 1150, 1233, 1559
BciT130I	CCWGG	3 cut(s)	467, 565, 846
BciVI	GTATCC	1 cut(s)	754
BclI	TGATCA	1 cut(s)	1576
BfaI	CTAG	4 cut(s)	143, 227, 269, 1613
BfmI	CTRYAG	2 cut(s)	825, 1404
BfuI	GTATCC	1 cut(s)	754
BglII	AGATCT	2 cut(s)	915, 1273
BisI	GCNGC	3 cut(s)	347, 717, 962
BlsI	GCNGC	3 cut(s)	348, 718, 963
Bme1390I	CCNGG	3 cut(s)	467, 565, 846
Bme18I	GGWCC	1 cut(s)	574
BmgT120I	GGNCC	2 cut(s)	574, 766
BmiI	GGNNCC	1 cut(s)	532
BmrFI	CCNGG	3 cut(s)	467, 565, 846
BmsI	GCATC	2 cut(s)	1160, 1342
BpiI	GAAGAC	1 cut(s)	986
BpmI	CTGGAG	1 cut(s)	1581
Bpu10I	CCTNAGC	1 cut(s)	1410
BpuEI	CTTGAG	1 cut(s)	1489
BsaWI	WCCGGW	1 cut(s)	802
Bsc4I	CCNNNNNNNGG	3 cut(s)	540, 583, 753
Bse118I	RCCGGY	1 cut(s)	802
Bse1I	ACTGG	1 cut(s)	1603
Bse21I	CCTNAGG	1 cut(s)	341
Bse3DI	GCAATG	1 cut(s)	1515
BseBI	CCWGG	3 cut(s)	467, 565, 846
BseGI	GGATG	7 cut(s)	82, 397, 433, 841, 949, 1142, 1175
BseLI	CCNNNNNNNGG	3 cut(s)	540, 583, 753
BseMI	GCAATG	1 cut(s)	1515
BseMII	CTCAG	5 cut(s)	355, 538, 948, 1174, 1401
BseNI	ACTGG	1 cut(s)	1603
BseRI	GAGGAG	2 cut(s)	1049, 1052
BseXI	GCAGC	3 cut(s)	358, 728, 973
Bsh1236I	CGCG	1 cut(s)	1534
Bsh1285I	CGRYCG	1 cut(s)	807
BshFI	GGCC	3 cut(s)	231, 458, 768
BshTI	ACCGGT	1 cut(s)	802
BsiEI	CGRYCG	1 cut(s)	807
BsiHKAI	GWGCWC	2 cut(s)	36, 999
BsiSI	CCGG	1 cut(s)	803
BslFI	GGGAC	1 cut(s)	1474
BslI	CCNNNNNNNGG	3 cut(s)	540, 583, 753
BsmFI	GGGAC	1 cut(s)	1474
BsmI	GAATGC	1 cut(s)	1396
BsnI	GGCC	3 cut(s)	231, 458, 768
Bsp1286I	GDGCHC	2 cut(s)	36, 999
Bsp143I	GATC	8 cut(s)	44, 336, 486, 730, 915, 1273, 1576, 1599
BspANI	GGCC	3 cut(s)	231, 458, 768
BspCNI	CTCAG	5 cut(s)	354, 537, 949, 1173, 1402
BspFNI	CGCG	1 cut(s)	1534
BspHI	TCATGA	1 cut(s)	1024
BspLI	GGNNCC	1 cut(s)	532
BspPI	GGATC	3 cut(s)	331, 494, 1594
BsrDI	GCAATG	1 cut(s)	1515
BsrFI	RCCGGY	1 cut(s)	802
BsrI	ACTGG	1 cut(s)	1603
BssAI	RCCGGY	1 cut(s)	802
BssMI	GATC	8 cut(s)	44, 336, 486, 730, 915, 1273, 1576, 1599
Bst2UI	CCWGG	3 cut(s)	467, 565, 846
Bst4CI	ACNGT	3 cut(s)	132, 277, 517
Bst6I	CTCTTC	1 cut(s)	598
BstAPI	GCANNNNNTGC	1 cut(s)	294
BstC8I	GCNNGC	1 cut(s)	440
BstDEI	CTNAG	8 cut(s)	341, 490, 524, 734, 872, 957, 1160, 1410
BstF5I	GGATG	7 cut(s)	82, 397, 433, 841, 949, 1142, 1175
BstFNI	CGCG	1 cut(s)	1534
BstHHI	GCGC	2 cut(s)	1534, 1543
BstKTI	GATC	8 cut(s)	47, 339, 489, 733, 918, 1276, 1579, 1602
BstMBI	GATC	8 cut(s)	44, 336, 486, 730, 915, 1273, 1576, 1599
BstMCI	CGRYCG	1 cut(s)	807
BstMWI	GCNNNNNNNGC	6 cut(s)	294, 1361, 1400, 1538, 1540, 1618
BstNI	CCWGG	3 cut(s)	467, 565, 846
BstNSI	RCATGY	3 cut(s)	442, 1381, 1467
BstSCI	CCNGG	3 cut(s)	465, 563, 844
BstSFI	CTRYAG	2 cut(s)	825, 1404
BstUI	CGCG	1 cut(s)	1534
BstV1I	GCAGC	3 cut(s)	358, 728, 973
BstV2I	GAAGAC	1 cut(s)	986
BstX2I	RGATCY	4 cut(s)	336, 486, 915, 1273
BstXI	CCANNNNNNTGG	4 cut(s)	69, 466, 571, 1318
BstYI	RGATCY	4 cut(s)	336, 486, 915, 1273
Bsu36I	CCTNAGG	1 cut(s)	341
BsuI	GTATCC	1 cut(s)	754
BsuRI	GGCC	3 cut(s)	231, 458, 768
BtgZI	GCGATG	1 cut(s)	1365
BtsCI	GGATG	7 cut(s)	82, 397, 433, 841, 949, 1142, 1175
BtsI	GCAGTG	2 cut(s)	719, 1329
BtsIMutI	CAGTG	3 cut(s)	273, 719, 1329
Cac8I	GCNNGC	1 cut(s)	440
CciI	TCATGA	1 cut(s)	1024
CfoI	GCGC	2 cut(s)	1534, 1543
Cfr10I	RCCGGY	1 cut(s)	802
Cfr13I	GGNCC	2 cut(s)	574, 766
Csp6I	GTAC	1 cut(s)	1123
CspAI	ACCGGT	1 cut(s)	802
CspCI	CAANNNNNGTGG	2 cut(s)	1510, 1545
CviQI	GTAC	1 cut(s)	1123
DdeI	CTNAG	8 cut(s)	341, 490, 524, 734, 872, 957, 1160, 1410
DpnI	GATC	8 cut(s)	46, 338, 488, 732, 917, 1275, 1578, 1601
DpnII	GATC	8 cut(s)	44, 336, 486, 730, 915, 1273, 1576, 1599
Eam1104I	CTCTTC	1 cut(s)	598
EarI	CTCTTC	1 cut(s)	598
Eco147I	AGGCCT	1 cut(s)	231
Eco47I	GGWCC	1 cut(s)	574
Eco57I	CTGAAG	3 cut(s)	201, 1344, 1419
Eco81I	CCTNAGG	1 cut(s)	341
EcoRII	CCWGG	3 cut(s)	465, 563, 844
EcoT22I	ATGCAT	2 cut(s)	299, 1175
FalI	AAGNNNNNCTT	2 cut(s)	426, 458
FaqI	GGGAC	1 cut(s)	1474
FauNDI	CATATG	1 cut(s)	1370
FbaI	TGATCA	1 cut(s)	1576
Fnu4HI	GCNGC	3 cut(s)	347, 717, 962
FokI	GGATG	7 cut(s)	89, 404, 440, 828, 956, 1129, 1182
Fsp4HI	GCNGC	3 cut(s)	347, 717, 962
FspBI	CTAG	4 cut(s)	143, 227, 269, 1613
GlaI	GCGC	2 cut(s)	1533, 1542
GluI	GCNGC	3 cut(s)	347, 717, 962
GsuI	CTGGAG	1 cut(s)	1581
HaeIII	GGCC	3 cut(s)	231, 458, 768
HapII	CCGG	1 cut(s)	803
HhaI	GCGC	2 cut(s)	1534, 1543
Hin6I	GCGC	2 cut(s)	1532, 1541
HinP1I	GCGC	2 cut(s)	1532, 1541
HindIII	AAGCTT	1 cut(s)	504
HinfI	GANTC	7 cut(s)	5, 89, 139, 544, 892, 1051, 1236
HpaII	CCGG	1 cut(s)	803
HphI	GGTGA	5 cut(s)	491, 913, 1300, 1491, 1586
Hpy188I	TCNGA	5 cut(s)	96, 527, 897, 1296, 1399
Hpy188III	TCNNGA	8 cut(s)	126, 235, 541, 548, 968, 1025, 1229, 1580
Hpy99I	CGWCG	1 cut(s)	45
HpyAV	CCTTC	4 cut(s)	67, 391, 470, 1368
HpyCH4III	ACNGT	3 cut(s)	132, 277, 517
HpyCH4V	TGCA	6 cut(s)	297, 328, 404, 724, 1173, 1282
HpyF10VI	GCNNNNNNNGC	6 cut(s)	294, 1361, 1400, 1538, 1540, 1618
HpyF3I	CTNAG	8 cut(s)	341, 490, 524, 734, 872, 957, 1160, 1410
HspAI	GCGC	2 cut(s)	1532, 1541
Ksp22I	TGATCA	1 cut(s)	1576
Kzo9I	GATC	8 cut(s)	44, 336, 486, 730, 915, 1273, 1576, 1599
LmnI	GCTCC	3 cut(s)	586, 1131, 1360
Lsp1109I	GCAGC	3 cut(s)	358, 728, 973
LweI	GCATC	2 cut(s)	1160, 1342
MaeI	CTAG	4 cut(s)	143, 227, 269, 1613
MaeIII	GTNAC	3 cut(s)	952, 1229, 1373
MalI	GATC	8 cut(s)	46, 338, 488, 732, 917, 1275, 1578, 1601
MboI	GATC	8 cut(s)	44, 336, 486, 730, 915, 1273, 1576, 1599
MboII	GAAGA	9 cut(s)	169, 194, 615, 910, 991, 1163, 1283, 1429, 1459
MfeI	CAATTG	1 cut(s)	197
MflI	RGATCY	4 cut(s)	336, 486, 915, 1273
MhlI	GDGCHC	2 cut(s)	36, 999
MluCI	AATT	6 cut(s)	52, 197, 418, 683, 1016, 1029
MmeI	TCCRAC	1 cut(s)	1028
Mph1103I	ATGCAT	2 cut(s)	299, 1175
MseI	TTAA	6 cut(s)	333, 407, 618, 702, 833, 1422
MslI	CAYNNNNRTG	2 cut(s)	642, 1266
MspA1I	CMGCKG	1 cut(s)	1409
MspI	CCGG	1 cut(s)	803
MspR9I	CCNGG	3 cut(s)	467, 565, 846
MunI	CAATTG	1 cut(s)	197
Mva1269I	GAATGC	1 cut(s)	1396
MvaI	CCWGG	3 cut(s)	467, 565, 846
MvnI	CGCG	1 cut(s)	1534
MwoI	GCNNNNNNNGC	6 cut(s)	294, 1361, 1400, 1538, 1540, 1618
NdeI	CATATG	1 cut(s)	1370
NdeII	GATC	8 cut(s)	44, 336, 486, 730, 915, 1273, 1576, 1599
NlaIV	GGNNCC	1 cut(s)	532
NmeAIII	GCCGAG	1 cut(s)	1573
NmuCI	GTSAC	1 cut(s)	1229
NsiI	ATGCAT	2 cut(s)	299, 1175
NspI	RCATGY	3 cut(s)	442, 1381, 1467
PaeI	GCATGC	1 cut(s)	442
PagI	TCATGA	1 cut(s)	1024
PceI	AGGCCT	1 cut(s)	231
PctI	GAATGC	1 cut(s)	1396
PfeI	GAWTC	7 cut(s)	5, 89, 139, 544, 892, 1051, 1236
PflMI	CCANNNNNTGG	3 cut(s)	540, 583, 753
PinAI	ACCGGT	1 cut(s)	802
PkrI	GCNGC	3 cut(s)	348, 718, 963
Psp6I	CCWGG	3 cut(s)	465, 563, 844
PspGI	CCWGG	3 cut(s)	465, 563, 844
PspN4I	GGNNCC	1 cut(s)	532
PspPI	GGNCC	2 cut(s)	574, 766
PsrI	GAACNNNNNNTAC	2 cut(s)	89, 121
PsuI	RGATCY	4 cut(s)	336, 486, 915, 1273
PvuII	CAGCTG	1 cut(s)	1409
RsaI	GTAC	1 cut(s)	1124
RsaNI	GTAC	1 cut(s)	1123
RseI	CAYNNNNRTG	2 cut(s)	642, 1266
SaqAI	TTAA	6 cut(s)	333, 407, 618, 702, 833, 1422
SatI	GCNGC	3 cut(s)	347, 717, 962
Sau3AI	GATC	8 cut(s)	44, 336, 486, 730, 915, 1273, 1576, 1599
Sau96I	GGNCC	2 cut(s)	574, 766
ScrFI	CCNGG	3 cut(s)	467, 565, 846
SduI	GDGCHC	2 cut(s)	36, 999
SfaNI	GCATC	2 cut(s)	1160, 1342
SfcI	CTRYAG	2 cut(s)	825, 1404
SinI	GGWCC	1 cut(s)	574
SmiMI	CAYNNNNRTG	2 cut(s)	642, 1266
SmlI	CTYRAG	1 cut(s)	1468
SmoI	CTYRAG	1 cut(s)	1468
SphI	GCATGC	1 cut(s)	442
Sse9I	AATT	6 cut(s)	52, 197, 418, 683, 1016, 1029
SseBI	AGGCCT	1 cut(s)	231
SspI	AATATT	2 cut(s)	67, 1528
SspMI	CTAG	4 cut(s)	143, 227, 269, 1613
StuI	AGGCCT	1 cut(s)	231
StyD4I	CCNGG	3 cut(s)	465, 563, 844
TaaI	ACNGT	3 cut(s)	132, 277, 517
TaqI	TCGA	1 cut(s)	807
TasI	AATT	6 cut(s)	52, 197, 418, 683, 1016, 1029
TfiI	GAWTC	7 cut(s)	5, 89, 139, 544, 892, 1051, 1236
Tru1I	TTAA	6 cut(s)	333, 407, 618, 702, 833, 1422
Tru9I	TTAA	6 cut(s)	333, 407, 618, 702, 833, 1422
TscAI	CASTG	3 cut(s)	280, 726, 1336
TseFI	GTSAC	1 cut(s)	1229
TseI	GCWGC	3 cut(s)	346, 716, 961
Tsp45I	GTSAC	1 cut(s)	1229
TspDTI	ATGAA	9 cut(s)	376, 805, 992, 1041, 1167, 1193, 1284, 1403, 1495
TspGWI	ACGGA	1 cut(s)	1248
TspRI	CASTG	3 cut(s)	280, 726, 1336
Van91I	CCANNNNNTGG	3 cut(s)	540, 583, 753
VpaK11BI	GGWCC	1 cut(s)	574
XapI	RAATTY	1 cut(s)	1016
XceI	RCATGY	3 cut(s)	442, 1381, 1467
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1562
XspI	CTAG	4 cut(s)	143, 227, 269, 1613
Zsp2I	ATGCAT	2 cut(s)	299, 1175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.