Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0002039

Physical Location & Seq

Genomic Coordinates Forward (+)

6862449 .. 6871004

Gene Structure 8556 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G125300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1665 bp

ATGGAATCTAAAACAAACTTTCAAGTTGATGATCACCAAAGACGCTCAGCCAATTACAAGCCAAATATTTGGAAGGATGGTTTCCTTGAATCTCTGAACAGCAAATATATTGGAGATGATTATACAAGGCAGTTTGAGAATCTAATAAAAGATGTGAAGAATATGATGTTTGTTGAAACTGAAGATTTGATAGCTCAATTGGAGCTGATCGACAGAATTGGAAAACTAGGCCTCACGAACCACTTTGAAAAGGAAATCAAGGAAGCCCTAGACACTGTTGAAAATAGCAACCCATACATAATAGAGAACCTTTATGCTACTGCGTTGCACTTTAAGATCCTCAGGCAGCATGGCTATAAAGTATCGCAAGATGTTTTTGGTGGCTTCATGGATGAGAAGGGTGCATTAAAGGAAAGCAATCTTTGGGATGTCAAAGGCATGCTTGAACTTTTGGAGGCCTCAAACCTGGCTTTTGAAGGCGAAAGGATCTTAGATGAGGCGAAAGCTTCCTCTACGGTAGCTCTCAGAGGTTCCAAAGTCTGGAATCCGGACAATAACCTTGCCAGGCAAGTGATCCATGCTTTGGAGCTTTCATCACATCGAAGAGTAGGGTGGTTTAATGTCAAATCGCACATACAAGCCTATGAGAAAGACAATCACGCCAACACCGTTTTATTACTTGAATTGGCTAAACTCAACTTTAACATGGTTCAAGCAGCACTGCAAAAAGATCTAAGGGAAGTATCCATGTGGTGGAACAATCTGGGCCTCAAAGAACACTTGAACTTTGCAAGAGATAGACCGGTGGAGTGCTTCATGTTTGCTGTAGGATTAAATTTCCATCATGGCTACACATCTTTTAGAATTTTGCTTAGTAAAGTCATCAACTTGATTCTGATAATAGACGACGTTTATGACATTTATGGCTCATTGGAAGAACTAAAGATCTTCACCAACGCGGTCGACAGGTGGGATGTTGGGGCAACCGAACAGCTTCCAGAGTGTATGAAGACCTGTTTCCAAGTGCTCTACAACACTACTTGTGAATTTGCTCATGAAATTGAGGAGGAGAGTGGTTGGAATCTAGCATTACCTCATTTGAGCAAAGCGTGGGCAGATTTCTGTAAGGCATTATTAGTAGAGGCAGAGTGGTACAGCAGGAGCTACACACCATCCCTTGAAGAATACCTCAGTAATGGATGCATTTCATCATCAGTTTCAGTCCTTATGGTTCATACATTTTTCTCCACAACCCATCGTGACGGAATCAAAGAGATTGCTGATTTTCTGCACAAGAATGAAGATCTTGTCCATAACATATCTCTGATAGTTCGGCTCACCAATGATTTGGGAACTTCCACTGCTGAACAAGAGAGAGGCGATGCTCCTTCAGCAATCCTATGTTACATGCGAGAGATGAATGCTTCTGAAGATACAGCTGAGGCAAAGATTAAGGGCATGATCGACAATGCGTGGAAGAAAATAAATGGGACATGCTTGAGAACTCCACAACAAGTGCCTTTTCTCTCACCATTCATCAACAACATTGCCACAAATATTGCGCGAATGGCGCACAGCCTTTACCAAGCTGGAGATGGATTTGGTGATCAGGAACAAGGCTCTCGGCTGATCCAGTCTGTGCTAGTTGAGCCTTTACCACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006720 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009987 GO:0010333 GO:0010334 GO:0016829 GO:0016835 GO:0016838 GO:0042214 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0046246 GO:0051761 GO:0051762 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00909 ko01110 map00909 map01110

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

555

Amino Acids

63.22

Weight (kDa)

5.27

Isoelectric Point (pI)

35.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002039)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g03000
malus_domestica	MD10G1311000.v1.1
prunus_persica	Prupe.4G029900_v2.0.a1 Prupe.4G125200_v2.0.a1 Prupe.4G125300_v2.0.a1 Prupe.4G125300_v2.0.a1 Prupe.4G125500_v2.0.a1 Prupe.4G126400_v2.0.a1 Prupe.4G126600_v2.0.a1 Prupe.4G126600_v2.0.a1
pyrus_communis	pycom10g26190
rosa_chinensis	RchiOBHm_Chr1g0331201 RchiOBHm_Chr1g0331211 RchiOBHm_Chr5g0004591 RchiOBHm_Chr5g0004631 RchiOBHm_Chr5g0029171 RchiOBHm_Chr5g0029181 RchiOBHm_Chr5g0029221 RchiOBHm_Chr5g0029231
rosa_laevigata	RLG00000031243 RLG00000031247 RLG00000031248
rosa_multiflora	Rmu_sc0003758.1_g000015 Rmu_sc0005711.1_g000009 Rmu_sc0012347.1_g000002
rosa_roxburghii	Rroxscaffold_1G00070900 Rroxscaffold_1G00070960
rosa_rugosa	Rorug04G0412300 Rorug04G0412700 Rorug04G0412800 Rorug04G0412900 Rorug04G0413000
rosa_samantha	Rh1AG116200 Rh1DG120600 Rh5AG040400 Rh5BG039900 Rh5CG043700 Rh5CG044200 Rh5CG224800 Rh5DG039500 Rh5DG039600 Rh5DG040200
rosa_wichuraiana	Rw1G009340 Rw5G003880 Rw5G003920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	540, 583, 753
AccI	GTMKAC	1 cut(s)	963
AccII	CGCG	2 cut(s)	959, 1564
AccIII	TCCGGA	1 cut(s)	547
AciI	CCGC	1 cut(s)	959
AclWI	GGATC	4 cut(s)	331, 494, 568, 1624
AcsI	RAATTY	3 cut(s)	835, 864, 1046
AcuI	CTGAAG	3 cut(s)	201, 1374, 1449
AfaI	GTAC	1 cut(s)	1154
AfiI	CCNNNNNNNGG	3 cut(s)	540, 583, 753
AgeI	ACCGGT	1 cut(s)	802
AjnI	CCWGG	2 cut(s)	465, 563
AluBI	AGCT	9 cut(s)	194, 205, 506, 521, 589, 994, 1164, 1439, 1589
AluI	AGCT	9 cut(s)	194, 205, 506, 521, 589, 994, 1164, 1439, 1589
Alw21I	GWGCWC	1 cut(s)	1029
AlwI	GGATC	4 cut(s)	331, 494, 568, 1624
Aor13HI	TCCGGA	1 cut(s)	547
AoxI	GGCC	3 cut(s)	229, 456, 766
ApeKI	GCWGC	2 cut(s)	346, 716
ApoI	RAATTY	3 cut(s)	835, 864, 1046
AsiGI	ACCGGT	1 cut(s)	802
Asp700I	GAANNNNTTC	1 cut(s)	993
AspLEI	GCGC	2 cut(s)	1564, 1573
AspS9I	GGNCC	1 cut(s)	766
AsuHPI	GGTGA	5 cut(s)	26, 943, 1330, 1521, 1616
AxyI	CCTNAGG	1 cut(s)	341
BbsI	GAAGAC	1 cut(s)	1016
Bbv12I	GWGCWC	1 cut(s)	1029
BbvCI	CCTCAGC	1 cut(s)	1440
BbvI	GCAGC	2 cut(s)	358, 728
BccI	CCATC	5 cut(s)	71, 849, 1180, 1263, 1589
BciT130I	CCWGG	2 cut(s)	467, 565
BciVI	GTATCC	1 cut(s)	754
BclI	TGATCA	2 cut(s)	31, 1606
BfaI	CTAG	4 cut(s)	227, 269, 1085, 1643
BfmI	CTRYAG	1 cut(s)	825
BfuI	GTATCC	1 cut(s)	754
BglII	AGATCT	3 cut(s)	730, 945, 1303
BisI	GCNGC	2 cut(s)	347, 717
BlpI	GCTNAGC	1 cut(s)	46
BlsI	GCNGC	2 cut(s)	348, 718
Bme1390I	CCNGG	2 cut(s)	467, 565
BmgT120I	GGNCC	1 cut(s)	766
BmiI	GGNNCC	1 cut(s)	532
BmrFI	CCNGG	2 cut(s)	467, 565
BmsI	GCATC	2 cut(s)	1190, 1372
BpiI	GAAGAC	1 cut(s)	1016
BpmI	CTGGAG	1 cut(s)	1611
Bpu10I	CCTNAGC	1 cut(s)	1440
Bpu1102I	GCTNAGC	1 cut(s)	46
BpuEI	CTTGAG	1 cut(s)	1519
BsaWI	WCCGGW	2 cut(s)	547, 802
Bsc4I	CCNNNNNNNGG	3 cut(s)	540, 583, 753
Bse118I	RCCGGY	1 cut(s)	802
Bse1I	ACTGG	1 cut(s)	1633
Bse21I	CCTNAGG	1 cut(s)	341
Bse3DI	GCAATG	1 cut(s)	1545
BseAI	TCCGGA	1 cut(s)	547
BseBI	CCWGG	2 cut(s)	467, 565
BseGI	GGATG	6 cut(s)	82, 397, 433, 979, 1172, 1205
BseLI	CCNNNNNNNGG	3 cut(s)	540, 583, 753
BseMI	GCAATG	1 cut(s)	1545
BseMII	CTCAG	5 cut(s)	60, 355, 538, 1204, 1431
BseNI	ACTGG	1 cut(s)	1633
BseRI	GAGGAG	2 cut(s)	1079, 1082
BseXI	GCAGC	2 cut(s)	358, 728
BsgI	GTGCAG	1 cut(s)	1274
Bsh1236I	CGCG	2 cut(s)	959, 1564
Bsh1285I	CGRYCG	1 cut(s)	963
BshFI	GGCC	3 cut(s)	231, 458, 768
BshTI	ACCGGT	1 cut(s)	802
BsiEI	CGRYCG	1 cut(s)	963
BsiHKAI	GWGCWC	1 cut(s)	1029
BsiSI	CCGG	2 cut(s)	548, 803
BslFI	GGGAC	1 cut(s)	1504
BslI	CCNNNNNNNGG	3 cut(s)	540, 583, 753
BsmFI	GGGAC	1 cut(s)	1504
BsmI	GAATGC	1 cut(s)	1426
BsnI	GGCC	3 cut(s)	231, 458, 768
Bsp1286I	GDGCHC	1 cut(s)	1029
Bsp13I	TCCGGA	1 cut(s)	547
Bsp1720I	GCTNAGC	1 cut(s)	46
BspACI	CCGC	1 cut(s)	959
BspANI	GGCC	3 cut(s)	231, 458, 768
BspCNI	CTCAG	5 cut(s)	59, 354, 537, 1203, 1432
BspEI	TCCGGA	1 cut(s)	547
BspFNI	CGCG	2 cut(s)	959, 1564
BspHI	TCATGA	1 cut(s)	1054
BspLI	GGNNCC	1 cut(s)	532
BspPI	GGATC	4 cut(s)	331, 494, 568, 1624
BsrDI	GCAATG	1 cut(s)	1545
BsrFI	RCCGGY	1 cut(s)	802
BsrI	ACTGG	1 cut(s)	1633
BssAI	RCCGGY	1 cut(s)	802
Bst2UI	CCWGG	2 cut(s)	467, 565
Bst4CI	ACNGT	3 cut(s)	277, 517, 670
Bst6I	CTCTTC	1 cut(s)	598
BstC8I	GCNNGC	1 cut(s)	440
BstDEI	CTNAG	8 cut(s)	46, 341, 490, 524, 734, 872, 1190, 1440
BstF5I	GGATG	6 cut(s)	82, 397, 433, 979, 1172, 1205
BstFNI	CGCG	2 cut(s)	959, 1564
BstHHI	GCGC	2 cut(s)	1564, 1573
BstMCI	CGRYCG	1 cut(s)	963
BstMWI	GCNNNNNNNGC	4 cut(s)	1391, 1568, 1570, 1648
BstNI	CCWGG	2 cut(s)	467, 565
BstNSI	RCATGY	3 cut(s)	442, 1411, 1497
BstSCI	CCNGG	2 cut(s)	465, 563
BstSFI	CTRYAG	1 cut(s)	825
BstUI	CGCG	2 cut(s)	959, 1564
BstV1I	GCAGC	2 cut(s)	358, 728
BstV2I	GAAGAC	1 cut(s)	1016
BstX2I	RGATCY	5 cut(s)	336, 486, 730, 945, 1303
BstXI	CCANNNNNNTGG	2 cut(s)	69, 1348
BstYI	RGATCY	5 cut(s)	336, 486, 730, 945, 1303
Bsu36I	CCTNAGG	1 cut(s)	341
BsuI	GTATCC	1 cut(s)	754
BsuRI	GGCC	3 cut(s)	231, 458, 768
BtgZI	GCGATG	1 cut(s)	1395
BtsCI	GGATG	6 cut(s)	82, 397, 433, 979, 1172, 1205
BtsI	GCAGTG	2 cut(s)	719, 1359
BtsIMutI	CAGTG	3 cut(s)	273, 719, 1359
Cac8I	GCNNGC	1 cut(s)	440
CciI	TCATGA	1 cut(s)	1054
CfoI	GCGC	2 cut(s)	1564, 1573
Cfr10I	RCCGGY	1 cut(s)	802
Cfr13I	GGNCC	1 cut(s)	766
CseI	GACGC	1 cut(s)	51
Csp6I	GTAC	1 cut(s)	1153
CspAI	ACCGGT	1 cut(s)	802
CspCI	CAANNNNNGTGG	2 cut(s)	1540, 1575
CviQI	GTAC	1 cut(s)	1153
DdeI	CTNAG	8 cut(s)	46, 341, 490, 524, 734, 872, 1190, 1440
Eam1104I	CTCTTC	1 cut(s)	598
EarI	CTCTTC	1 cut(s)	598
Eco147I	AGGCCT	2 cut(s)	231, 458
Eco57I	CTGAAG	3 cut(s)	201, 1374, 1449
Eco81I	CCTNAGG	1 cut(s)	341
EcoRII	CCWGG	2 cut(s)	465, 563
EcoT22I	ATGCAT	1 cut(s)	1205
FalI	AAGNNNNNCTT	2 cut(s)	426, 458
FaqI	GGGAC	1 cut(s)	1504
FbaI	TGATCA	2 cut(s)	31, 1606
FblI	GTMKAC	1 cut(s)	963
Fnu4HI	GCNGC	2 cut(s)	347, 717
FokI	GGATG	6 cut(s)	89, 404, 440, 986, 1159, 1212
Fsp4HI	GCNGC	2 cut(s)	347, 717
FspBI	CTAG	4 cut(s)	227, 269, 1085, 1643
GlaI	GCGC	2 cut(s)	1563, 1572
GluI	GCNGC	2 cut(s)	347, 717
GsuI	CTGGAG	1 cut(s)	1611
HaeIII	GGCC	3 cut(s)	231, 458, 768
HapII	CCGG	2 cut(s)	548, 803
HgaI	GACGC	1 cut(s)	51
HhaI	GCGC	2 cut(s)	1564, 1573
Hin6I	GCGC	2 cut(s)	1562, 1571
HinP1I	GCGC	2 cut(s)	1562, 1571
HincII	GTYRAC	1 cut(s)	964
HindII	GTYRAC	1 cut(s)	964
HindIII	AAGCTT	1 cut(s)	504
HinfI	GANTC	7 cut(s)	5, 89, 139, 544, 892, 1081, 1266
HpaII	CCGG	2 cut(s)	548, 803
HphI	GGTGA	5 cut(s)	26, 943, 1330, 1521, 1616
Hpy166II	GTNNAC	1 cut(s)	964
Hpy188I	TCNGA	5 cut(s)	96, 527, 897, 1326, 1429
Hpy188III	TCNNGA	7 cut(s)	235, 541, 548, 998, 1055, 1259, 1610
Hpy8I	GTNNAC	1 cut(s)	964
Hpy99I	CGWCG	1 cut(s)	911
HpyAV	CCTTC	4 cut(s)	67, 391, 470, 1398
HpyCH4III	ACNGT	3 cut(s)	277, 517, 670
HpyCH4IV	ACGT	1 cut(s)	909
HpyCH4V	TGCA	6 cut(s)	328, 404, 724, 791, 1203, 1291
HpyF10VI	GCNNNNNNNGC	4 cut(s)	1391, 1568, 1570, 1648
HpyF3I	CTNAG	8 cut(s)	46, 341, 490, 524, 734, 872, 1190, 1440
HpySE526I	ACGT	1 cut(s)	909
HspAI	GCGC	2 cut(s)	1562, 1571
Kpn2I	TCCGGA	1 cut(s)	547
Ksp22I	TGATCA	2 cut(s)	31, 1606
LmnI	GCTCC	4 cut(s)	202, 586, 1161, 1390
Lsp1109I	GCAGC	2 cut(s)	358, 728
LweI	GCATC	2 cut(s)	1190, 1372
MaeI	CTAG	4 cut(s)	227, 269, 1085, 1643
MaeII	ACGT	1 cut(s)	909
MaeIII	GTNAC	2 cut(s)	1259, 1403
MfeI	CAATTG	1 cut(s)	197
MflI	RGATCY	5 cut(s)	336, 486, 730, 945, 1303
MhlI	GDGCHC	1 cut(s)	1029
MluCI	AATT	8 cut(s)	52, 197, 216, 683, 835, 864, 1046, 1059
MmeI	TCCRAC	1 cut(s)	1058
Mph1103I	ATGCAT	1 cut(s)	1205
MroI	TCCGGA	1 cut(s)	547
MroXI	GAANNNNTTC	1 cut(s)	993
MseI	TTAA	6 cut(s)	333, 407, 618, 702, 833, 1452
MslI	CAYNNNNRTG	1 cut(s)	1296
MspA1I	CMGCKG	1 cut(s)	1439
MspI	CCGG	2 cut(s)	548, 803
MspR9I	CCNGG	2 cut(s)	467, 565
MunI	CAATTG	1 cut(s)	197
Mva1269I	GAATGC	1 cut(s)	1426
MvaI	CCWGG	2 cut(s)	467, 565
MvnI	CGCG	2 cut(s)	959, 1564
MwoI	GCNNNNNNNGC	4 cut(s)	1391, 1568, 1570, 1648
NlaIV	GGNNCC	1 cut(s)	532
NmeAIII	GCCGAG	1 cut(s)	1603
NmuCI	GTSAC	1 cut(s)	1259
NsiI	ATGCAT	1 cut(s)	1205
NspI	RCATGY	3 cut(s)	442, 1411, 1497
PaeI	GCATGC	1 cut(s)	442
PagI	TCATGA	1 cut(s)	1054
PceI	AGGCCT	2 cut(s)	231, 458
PcsI	WCGNNNNNNNCGW	1 cut(s)	666
PctI	GAATGC	1 cut(s)	1426
PdmI	GAANNNNTTC	1 cut(s)	993
PfeI	GAWTC	7 cut(s)	5, 89, 139, 544, 892, 1081, 1266
PflMI	CCANNNNNTGG	3 cut(s)	540, 583, 753
PinAI	ACCGGT	1 cut(s)	802
PkrI	GCNGC	2 cut(s)	348, 718
Psp6I	CCWGG	2 cut(s)	465, 563
PspGI	CCWGG	2 cut(s)	465, 563
PspN4I	GGNNCC	1 cut(s)	532
PspPI	GGNCC	1 cut(s)	766
PsuI	RGATCY	5 cut(s)	336, 486, 730, 945, 1303
PvuII	CAGCTG	1 cut(s)	1439
RsaI	GTAC	1 cut(s)	1154
RsaNI	GTAC	1 cut(s)	1153
RseI	CAYNNNNRTG	1 cut(s)	1296
SalI	GTCGAC	1 cut(s)	962
SaqAI	TTAA	6 cut(s)	333, 407, 618, 702, 833, 1452
SatI	GCNGC	2 cut(s)	347, 717
Sau96I	GGNCC	1 cut(s)	766
ScrFI	CCNGG	2 cut(s)	467, 565
SduI	GDGCHC	1 cut(s)	1029
SfaNI	GCATC	2 cut(s)	1190, 1372
SfcI	CTRYAG	1 cut(s)	825
SmiMI	CAYNNNNRTG	1 cut(s)	1296
SmlI	CTYRAG	1 cut(s)	1498
SmoI	CTYRAG	1 cut(s)	1498
SphI	GCATGC	1 cut(s)	442
Sse9I	AATT	8 cut(s)	52, 197, 216, 683, 835, 864, 1046, 1059
SseBI	AGGCCT	2 cut(s)	231, 458
SsiI	CCGC	1 cut(s)	959
SspI	AATATT	2 cut(s)	67, 1558
SspMI	CTAG	4 cut(s)	227, 269, 1085, 1643
StuI	AGGCCT	2 cut(s)	231, 458
StyD4I	CCNGG	2 cut(s)	465, 563
TaaI	ACNGT	3 cut(s)	277, 517, 670
TaiI	ACGT	1 cut(s)	912
TaqI	TCGA	4 cut(s)	210, 601, 963, 1464
TasI	AATT	8 cut(s)	52, 197, 216, 683, 835, 864, 1046, 1059
TfiI	GAWTC	7 cut(s)	5, 89, 139, 544, 892, 1081, 1266
Tru1I	TTAA	6 cut(s)	333, 407, 618, 702, 833, 1452
Tru9I	TTAA	6 cut(s)	333, 407, 618, 702, 833, 1452
TscAI	CASTG	3 cut(s)	280, 726, 1366
TseFI	GTSAC	1 cut(s)	1259
TseI	GCWGC	2 cut(s)	346, 716
Tsp45I	GTSAC	1 cut(s)	1259
TspGWI	ACGGA	1 cut(s)	1278
TspRI	CASTG	3 cut(s)	280, 726, 1366
Van91I	CCANNNNNTGG	3 cut(s)	540, 583, 753
XapI	RAATTY	3 cut(s)	835, 864, 1046
XceI	RCATGY	3 cut(s)	442, 1411, 1497
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1592
XmiI	GTMKAC	1 cut(s)	963
XmnI	GAANNNNTTC	1 cut(s)	993
XspI	CTAG	4 cut(s)	227, 269, 1085, 1643
Zsp2I	ATGCAT	1 cut(s)	1205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.