Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002039

Physical Location & Seq

Genomic Coordinates Forward (+)

3298790 .. 3301673

Gene Structure 2884 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031243

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1485 bp

ATGGATTGTGGTATGCACCTGCATAACCATCAAGCTGATGAGCAACAGATACTGCAATGGCAGACGAAATCCGAACCCCCTTCCTCGGTACATGATCAAAGACGATCTGCCAATTACAAGCCGAATATTTGGAAGTATGATTTCCTTGAATCTCTTAACAGCAAATTTGATGGAGAATGTTATCAAATTCAGATTCAGAAGCTAATAGAAGATGTTAAGGATTTGTTTGGTGAATGTAAGGAATTGGGTTTACTAGCTAAGTTGGAGCTGATTGACAGCATCCAAAAACTAGGCCTGAACAGCTACTTTGAGAAGGAAATCAAGGAAACCCTAGACACCATAGCATCTGTCGAACTGAAAAACAATAGCAATCCCTTCATTGGTTCAGATGGTGATCTCTATGCTACGGCACTTCTCTTTAAGATTCTTAGGCAGCATGGTTATAAAGTTTCACAAGATATATTTGGTGTTTTCATGGATGAAATTGGTACATTAAAGAAGAGCACATTTGGGGATGTGAAAGGAATGCTCGAACTTTTGGAGGCCTCAAACTTAGCTTTAGAAGGTGAAAATATCCTAGATGAGGCTAAAGCTTTCTTAATGGTCACTCTCAGAGATACCAATACCTTGTGTGATGATATAGACGGTTGCATTTCCAAGCATGTGGCCGATGCCTTGAAGCTTTCATCACAAAGGAGAGTCCAGTGGTTTAATGTGAAATGGCACATCAAAGCCTACGAGAAAGACAATACGAAGCAAGCCAACATGACCACTTTACTTGAGCTGGCGAAACTCAACTTCAACATGGTTCAAGCCACACTCCAAAAAGATCTAAGGGAAGCATCCAAGTGGTGGAACAATCTGGGACTCTCAAAGAACTTGGACTTTGCAAGAGATAGAATGGTCGAATGTTTCATGTGTGCCGTGGGATTAGCTTTCGAGCCTGAGTACAAGTCCTTTAGAAAATGGATAACTAAAGTCGTCAATTTGATTCTCATCATCGATGACGTTTATGATGTTTATGGCTCATTGGAAGAGCTAAAACATTTCACCAATGCTGTTGAAAGGTGGGATGTTAGGGAAACTGAGCAGCTTCCTGAGTGTATGAAGATCTGTCTCCAAGTACTTTACAACACGACTTGTGAAATTGCTTATGAAATCGAGGAGGACAAGGGTCGGAACCAAGTATTACCTCATCTGCGCAAAGTGTGGGCAGATTTTTGTAGAGTGTTATTGGTGGAGGCAGAGTGGTACAATAAGGCCTACACACCGTCCTTTGAAGAGTACCTTAGCAATGGTTGGATTTCATCATCTGCTTCGCTGATTTTCACTCATGCACTCTTCGCCACAGCACATGAGGAGAGAATGGATGAATTTCTGCACATGAATGAAGATCTCGTGTACAATATCTCTCTGATACTTCGACTCTTAAATGATCTGGGAACTTCTGCGGTAATTTTATTCTTGTTGCTTGCTCCATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006720 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009987 GO:0010333 GO:0010334 GO:0016829 GO:0016835 GO:0016838 GO:0042214 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0046246 GO:0051761 GO:0051762 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00909 ko01110 map00909 map01110

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

495

Amino Acids

57.12

Weight (kDa)

5.06

Isoelectric Point (pI)

40.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Terpene_synth	PF01397	43 - 226	1.8e-42	Terpene synthase, N-terminal domain
Terpene_synth_C	PF03936	287 - 483	7.2e-70	Terpene synthase family, metal binding domain
Terpene_syn_C_2	PF19086	326 - 483	3.8e-38	Terpene synthase family 2, C-terminal metal binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002039)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g03000
malus_domestica	MD10G1311000.v1.1
prunus_persica	Prupe.4G029900_v2.0.a1 Prupe.4G125200_v2.0.a1 Prupe.4G125300_v2.0.a1 Prupe.4G125300_v2.0.a1 Prupe.4G125500_v2.0.a1 Prupe.4G126400_v2.0.a1 Prupe.4G126600_v2.0.a1 Prupe.4G126600_v2.0.a1
pyrus_communis	pycom10g26190
rosa_chinensis	RchiOBHm_Chr1g0331201 RchiOBHm_Chr1g0331211 RchiOBHm_Chr5g0004591 RchiOBHm_Chr5g0004631 RchiOBHm_Chr5g0029171 RchiOBHm_Chr5g0029181 RchiOBHm_Chr5g0029221 RchiOBHm_Chr5g0029231
rosa_laevigata	RLG00000031243 RLG00000031247 RLG00000031248
rosa_multiflora	Rmu_sc0003758.1_g000015 Rmu_sc0005711.1_g000009 Rmu_sc0012347.1_g000002
rosa_roxburghii	Rroxscaffold_1G00070900 Rroxscaffold_1G00070960
rosa_rugosa	Rorug04G0412300 Rorug04G0412700 Rorug04G0412800 Rorug04G0412900 Rorug04G0413000
rosa_samantha	Rh1AG116200 Rh1DG120600 Rh5AG040400 Rh5BG039900 Rh5CG043700 Rh5CG044200 Rh5CG224800 Rh5DG039500 Rh5DG039600 Rh5DG040200
rosa_wichuraiana	Rw1G009340 Rw5G003880 Rw5G003920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	444
AarI	CACCTGC	1 cut(s)	27
Acc16I	TGCGCA	1 cut(s)	1202
Acc36I	ACCTGC	1 cut(s)	27
AccB7I	CCANNNNNTGG	1 cut(s)	852
AciI	CCGC	1 cut(s)	1451
AcoI	YGGCCR	1 cut(s)	666
AcsI	RAATTY	3 cut(s)	164, 186, 1373
AfaI	GTAC	7 cut(s)	90, 490, 950, 1125, 1253, 1286, 1403
AfiI	CCNNNNNNNGG	4 cut(s)	85, 380, 583, 852
AgsI	TTSAA	6 cut(s)	149, 679, 802, 812, 1064, 1280
Alw21I	GWGCWC	1 cut(s)	506
Alw26I	GTCTC	1 cut(s)	1121
AlwNI	CAGNNNCTG	1 cut(s)	52
AoxI	GGCC	4 cut(s)	292, 543, 666, 1260
ApeKI	GCWGC	2 cut(s)	433, 1090
ApoI	RAATTY	3 cut(s)	164, 186, 1373
AspLEI	GCGC	1 cut(s)	1203
AsuHPI	GGTGA	4 cut(s)	242, 404, 578, 1042
BauI	CACGAG	1 cut(s)	1397
Bbv12I	GWGCWC	1 cut(s)	506
BbvI	GCAGC	2 cut(s)	445, 1102
BccI	CCATC	3 cut(s)	36, 164, 383
BceAI	ACGGC	2 cut(s)	423, 908
BclI	TGATCA	1 cut(s)	94
BcoDI	GTCTC	1 cut(s)	1121
BfaI	CTAG	4 cut(s)	254, 290, 332, 578
BfuAI	ACCTGC	1 cut(s)	27
BglII	AGATCT	3 cut(s)	829, 1110, 1393
BisI	GCNGC	2 cut(s)	434, 1091
BlsI	GCNGC	2 cut(s)	435, 1092
BmcAI	AGTACT	1 cut(s)	1125
BmiI	GGNNCC	1 cut(s)	1181
BmsI	GCATC	4 cut(s)	288, 353, 661, 851
BoxI	GACNNNNGTC	1 cut(s)	1173
Bpu10I	CCTNAGC	1 cut(s)	1289
BpuEI	CTTGAG	1 cut(s)	800
Bsa29I	ATCGAT	1 cut(s)	1002
BsaBI	GATNNNNATC	2 cut(s)	393, 995
BsaJI	CCNNGG	2 cut(s)	84, 924
BsaXI	ACNNNNNCTCC	2 cut(s)	1232, 1262
Bsc4I	CCNNNNNNNGG	4 cut(s)	85, 380, 583, 852
Bse1I	ACTGG	1 cut(s)	703
Bse3DI	GCAATG	2 cut(s)	62, 1300
Bse8I	GATNNNNATC	2 cut(s)	393, 995
BseCI	ATCGAT	1 cut(s)	1002
BseDI	CCNNGG	2 cut(s)	84, 924
BseGI	GGATG	6 cut(s)	279, 484, 520, 842, 1078, 1375
BseJI	GATNNNNATC	2 cut(s)	393, 995
BseLI	CCNNNNNNNGG	4 cut(s)	85, 380, 583, 852
BseMI	GCAATG	2 cut(s)	62, 1300
BseMII	CTCAG	4 cut(s)	625, 936, 1077, 1089
BseNI	ACTGG	1 cut(s)	703
BseRI	GAGGAG	2 cut(s)	1178, 1373
BseXI	GCAGC	2 cut(s)	445, 1102
BsgI	GTGCAG	1 cut(s)	1364
BshFI	GGCC	4 cut(s)	294, 545, 668, 1262
BshVI	ATCGAT	1 cut(s)	1002
BsiHKAI	GWGCWC	1 cut(s)	506
BslFI	GGGAC	1 cut(s)	879
BslI	CCNNNNNNNGG	4 cut(s)	85, 380, 583, 852
BsmAI	GTCTC	1 cut(s)	1121
BsmFI	GGGAC	1 cut(s)	879
BsmI	GAATGC	1 cut(s)	531
BsnI	GGCC	4 cut(s)	294, 545, 668, 1262
Bsp1286I	GDGCHC	1 cut(s)	506
Bsp1407I	TGTACA	1 cut(s)	1401
Bsp143I	GATC	7 cut(s)	94, 104, 394, 829, 1110, 1393, 1435
BspACI	CCGC	1 cut(s)	1451
BspANI	GGCC	4 cut(s)	294, 545, 668, 1262
BspCNI	CTCAG	4 cut(s)	624, 937, 1078, 1090
BspDI	ATCGAT	1 cut(s)	1002
BspLI	GGNNCC	1 cut(s)	1181
BspMI	ACCTGC	1 cut(s)	27
BspQI	GCTCTTC	2 cut(s)	494, 1029
BsrDI	GCAATG	2 cut(s)	62, 1300
BsrGI	TGTACA	1 cut(s)	1401
BsrI	ACTGG	1 cut(s)	703
BssECI	CCNNGG	2 cut(s)	84, 924
BssMI	GATC	7 cut(s)	94, 104, 394, 829, 1110, 1393, 1435
BssSI	CACGAG	1 cut(s)	1397
Bst2BI	CACGAG	1 cut(s)	1397
Bst4CI	ACNGT	2 cut(s)	647, 1272
Bst6I	CTCTTC	4 cut(s)	494, 1029, 1275, 1346
BstAUI	TGTACA	1 cut(s)	1401
BstC8I	GCNNGC	3 cut(s)	759, 786, 1473
BstDEI	CTNAG	9 cut(s)	258, 428, 553, 611, 833, 945, 1086, 1098, 1289
BstDSI	CCRYGG	1 cut(s)	924
BstENI	CCTNNNNNAGG	1 cut(s)	581
BstF5I	GGATG	6 cut(s)	279, 484, 520, 842, 1078, 1375
BstHHI	GCGC	1 cut(s)	1203
BstKTI	GATC	7 cut(s)	97, 107, 397, 832, 1113, 1396, 1438
BstMAI	GTCTC	1 cut(s)	1121
BstMBI	GATC	7 cut(s)	94, 104, 394, 829, 1110, 1393, 1435
BstMWI	GCNNNNNNNGC	2 cut(s)	300, 1343
BstNSI	RCATGY	1 cut(s)	665
BstPAI	GACNNNNGTC	1 cut(s)	1173
BstV1I	GCAGC	2 cut(s)	445, 1102
BstX2I	RGATCY	3 cut(s)	829, 1110, 1393
BstXI	CCANNNNNNTGG	1 cut(s)	664
BstYI	RGATCY	3 cut(s)	829, 1110, 1393
Bsu15I	ATCGAT	1 cut(s)	1002
BsuRI	GGCC	4 cut(s)	294, 545, 668, 1262
BsuTUI	ATCGAT	1 cut(s)	1002
BtgI	CCRYGG	1 cut(s)	924
BtsCI	GGATG	6 cut(s)	279, 484, 520, 842, 1078, 1375
BtsIMutI	CAGTG	1 cut(s)	710
BveI	ACCTGC	1 cut(s)	27
Cac8I	GCNNGC	3 cut(s)	759, 786, 1473
CaiI	CAGNNNCTG	1 cut(s)	52
CfoI	GCGC	1 cut(s)	1203
ClaI	ATCGAT	1 cut(s)	1002
Csp6I	GTAC	7 cut(s)	89, 489, 949, 1124, 1252, 1285, 1402
CspCI	CAANNNNNGTGG	2 cut(s)	760, 795
CviQI	GTAC	7 cut(s)	89, 489, 949, 1124, 1252, 1285, 1402
DdeI	CTNAG	9 cut(s)	258, 428, 553, 611, 833, 945, 1086, 1098, 1289
DpnI	GATC	7 cut(s)	96, 106, 396, 831, 1112, 1395, 1437
DpnII	GATC	7 cut(s)	94, 104, 394, 829, 1110, 1393, 1435
EaeI	YGGCCR	1 cut(s)	666
Eam1104I	CTCTTC	4 cut(s)	494, 1029, 1275, 1346
EarI	CTCTTC	4 cut(s)	494, 1029, 1275, 1346
Eco147I	AGGCCT	3 cut(s)	294, 545, 1262
EcoNI	CCTNNNNNAGG	1 cut(s)	581
FalI	AAGNNNNNCTT	2 cut(s)	1272, 1304
FaqI	GGGAC	1 cut(s)	879
FbaI	TGATCA	1 cut(s)	94
Fnu4HI	GCNGC	2 cut(s)	434, 1091
FokI	GGATG	6 cut(s)	266, 491, 527, 829, 1085, 1382
Fsp4HI	GCNGC	2 cut(s)	434, 1091
FspBI	CTAG	4 cut(s)	254, 290, 332, 578
FspI	TGCGCA	1 cut(s)	1202
GlaI	GCGC	1 cut(s)	1202
GluI	GCNGC	2 cut(s)	434, 1091
HaeIII	GGCC	4 cut(s)	294, 545, 668, 1262
HhaI	GCGC	1 cut(s)	1203
Hin6I	GCGC	1 cut(s)	1201
HinP1I	GCGC	1 cut(s)	1201
HindIII	AAGCTT	2 cut(s)	591, 680
HinfI	GANTC	7 cut(s)	149, 193, 424, 699, 867, 991, 1425
HphI	GGTGA	4 cut(s)	242, 404, 578, 1042
Hpy166II	GTNNAC	2 cut(s)	251, 1402
Hpy188I	TCNGA	7 cut(s)	73, 192, 198, 388, 614, 1179, 1416
Hpy188III	TCNNGA	1 cut(s)	1097
Hpy8I	GTNNAC	2 cut(s)	251, 1402
HpyAV	CCTTC	4 cut(s)	90, 307, 385, 557
HpyCH4III	ACNGT	2 cut(s)	647, 1272
HpyCH4IV	ACGT	1 cut(s)	1008
HpyCH4V	TGCA	7 cut(s)	16, 22, 55, 651, 890, 1337, 1381
HpyF10VI	GCNNNNNNNGC	2 cut(s)	300, 1343
HpyF3I	CTNAG	9 cut(s)	258, 428, 553, 611, 833, 945, 1086, 1098, 1289
HpySE526I	ACGT	1 cut(s)	1008
HspAI	GCGC	1 cut(s)	1201
Ksp22I	TGATCA	1 cut(s)	94
Kzo9I	GATC	7 cut(s)	94, 104, 394, 829, 1110, 1393, 1435
LguI	GCTCTTC	2 cut(s)	494, 1029
LmnI	GCTCC	2 cut(s)	265, 1480
LpnPI	CCDG	8 cut(s)	32, 308, 716, 770, 848, 957, 1110, 1424
Lsp1109I	GCAGC	2 cut(s)	445, 1102
LweI	GCATC	4 cut(s)	288, 353, 661, 851
MaeI	CTAG	4 cut(s)	254, 290, 332, 578
MaeII	ACGT	1 cut(s)	1008
MaeIII	GTNAC	1 cut(s)	604
MalI	GATC	7 cut(s)	96, 106, 396, 831, 1112, 1395, 1437
MboI	GATC	7 cut(s)	94, 104, 394, 829, 1110, 1393, 1435
MboII	GAAGA	7 cut(s)	221, 511, 1046, 1120, 1292, 1333, 1403
MflI	RGATCY	3 cut(s)	829, 1110, 1393
MhlI	GDGCHC	1 cut(s)	506
MluCI	AATT	9 cut(s)	112, 164, 186, 242, 483, 985, 1146, 1373, 1455
MlyI	GAGTC	3 cut(s)	708, 861, 1419
MmeI	TCCRAC	3 cut(s)	243, 1157, 1280
MnlI	CCTC	9 cut(s)	94, 535, 556, 577, 1156, 1159, 1203, 1234, 1351
MseI	TTAA	7 cut(s)	156, 216, 420, 494, 599, 711, 1430
MslI	CAYNNNNRTG	2 cut(s)	847, 1386
Mva1269I	GAATGC	1 cut(s)	531
MwoI	GCNNNNNNNGC	2 cut(s)	300, 1343
NdeII	GATC	7 cut(s)	94, 104, 394, 829, 1110, 1393, 1435
NlaIV	GGNNCC	1 cut(s)	1181
NmuCI	GTSAC	1 cut(s)	604
NsbI	TGCGCA	1 cut(s)	1202
NspI	RCATGY	1 cut(s)	665
PaqCI	CACCTGC	1 cut(s)	27
PceI	AGGCCT	3 cut(s)	294, 545, 1262
PciSI	GCTCTTC	2 cut(s)	494, 1029
PctI	GAATGC	1 cut(s)	531
PfeI	GAWTC	4 cut(s)	149, 193, 424, 991
PflMI	CCANNNNNTGG	1 cut(s)	852
PkrI	GCNGC	2 cut(s)	435, 1092
PleI	GAGTC	3 cut(s)	707, 861, 1419
PpsI	GAGTC	3 cut(s)	707, 861, 1419
PshAI	GACNNNNGTC	1 cut(s)	1173
PsiI	TTATAA	1 cut(s)	444
PspN4I	GGNNCC	1 cut(s)	1181
PstNI	CAGNNNCTG	1 cut(s)	52
PsuI	RGATCY	3 cut(s)	829, 1110, 1393
RsaI	GTAC	7 cut(s)	90, 490, 950, 1125, 1253, 1286, 1403
RsaNI	GTAC	7 cut(s)	89, 489, 949, 1124, 1252, 1285, 1402
RseI	CAYNNNNRTG	2 cut(s)	847, 1386
SapI	GCTCTTC	2 cut(s)	494, 1029
SaqAI	TTAA	7 cut(s)	156, 216, 420, 494, 599, 711, 1430
SatI	GCNGC	2 cut(s)	434, 1091
Sau3AI	GATC	7 cut(s)	94, 104, 394, 829, 1110, 1393, 1435
ScaI	AGTACT	1 cut(s)	1125
SchI	GAGTC	3 cut(s)	708, 861, 1419
SduI	GDGCHC	1 cut(s)	506
SfaNI	GCATC	4 cut(s)	288, 353, 661, 851
SmiMI	CAYNNNNRTG	2 cut(s)	847, 1386
SmlI	CTYRAG	1 cut(s)	779
SmoI	CTYRAG	1 cut(s)	779
Sse9I	AATT	9 cut(s)	112, 164, 186, 242, 483, 985, 1146, 1373, 1455
SseBI	AGGCCT	3 cut(s)	294, 545, 1262
SsiI	CCGC	1 cut(s)	1451
SspI	AATATT	1 cut(s)	127
SspMI	CTAG	4 cut(s)	254, 290, 332, 578
StuI	AGGCCT	3 cut(s)	294, 545, 1262
TaaI	ACNGT	2 cut(s)	647, 1272
TaiI	ACGT	1 cut(s)	1011
TaqI	TCGA	7 cut(s)	351, 531, 906, 939, 1002, 1161, 1423
TasI	AATT	9 cut(s)	112, 164, 186, 242, 483, 985, 1146, 1373, 1455
TatI	WGTACW	3 cut(s)	948, 1123, 1401
TfiI	GAWTC	4 cut(s)	149, 193, 424, 991
Tru1I	TTAA	7 cut(s)	156, 216, 420, 494, 599, 711, 1430
Tru9I	TTAA	7 cut(s)	156, 216, 420, 494, 599, 711, 1430
TscAI	CASTG	1 cut(s)	710
TseFI	GTSAC	1 cut(s)	604
TseI	GCWGC	2 cut(s)	433, 1090
Tsp45I	GTSAC	1 cut(s)	604
TspRI	CASTG	1 cut(s)	710
Van91I	CCANNNNNTGG	1 cut(s)	852
XagI	CCTNNNNNAGG	1 cut(s)	581
XapI	RAATTY	3 cut(s)	164, 186, 1373
XceI	RCATGY	1 cut(s)	665
XspI	CTAG	4 cut(s)	254, 290, 332, 578
ZrmI	AGTACT	1 cut(s)	1125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.