Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002039

Physical Location & Seq

Genomic Coordinates Reverse (-)

57480020 .. 57480490

Gene Structure 471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0412800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGAGTCAACGTCGACACCCAAGCTTCTTCTGAAGCTCACCATCTTCATCTTCATCTCTGTTTTCATATTGCTTCAACTCTTTCCCATCTCCTATCTTCATCGAGCTCCATCCTTATGGCCACCCTCCAAGTTCTCATTGTTCACTGCTCCAAACTCTCTGTTTCCCAAGGAAGCTTTGCCCACCAAGTCAGGCTACCTCACAGTCAACTCCACCACAGGCTCTTCTATTTTCTACACCTATTATGAAGCTCAGAGCCTCACTTTCCCTGACCTCTCGCAAACCCCACTTATCATTTGGCTCCAGGGTGTGTTAAGAGTGAAGATTCTTAACATTGGCATTACATTATTTCATCACATGTTCCTACTGTTGCTTTCTACCTTTTGCTTTTCCTTCGGCTACTTTTACTCTCCCTTGTCTCCTGCTGCTTTTGTTCCCTTTGTCTCCTCCTTAATTGAAGGAGGGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006720 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009987 GO:0010333 GO:0010334 GO:0016829 GO:0016835 GO:0016838 GO:0042214 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0046246 GO:0051761 GO:0051762 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00909 ko01110 map00909 map01110

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

156

Amino Acids

17.53

Weight (kDa)

9.1

Isoelectric Point (pI)

55.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S10	PF00450	59 - 103	1.9e-06	Serine carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002039)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g03000
malus_domestica	MD10G1311000.v1.1
prunus_persica	Prupe.4G029900_v2.0.a1 Prupe.4G125200_v2.0.a1 Prupe.4G125300_v2.0.a1 Prupe.4G125300_v2.0.a1 Prupe.4G125500_v2.0.a1 Prupe.4G126400_v2.0.a1 Prupe.4G126600_v2.0.a1 Prupe.4G126600_v2.0.a1
pyrus_communis	pycom10g26190
rosa_chinensis	RchiOBHm_Chr1g0331201 RchiOBHm_Chr1g0331211 RchiOBHm_Chr5g0004591 RchiOBHm_Chr5g0004631 RchiOBHm_Chr5g0029171 RchiOBHm_Chr5g0029181 RchiOBHm_Chr5g0029221 RchiOBHm_Chr5g0029231
rosa_laevigata	RLG00000031243 RLG00000031247 RLG00000031248
rosa_multiflora	Rmu_sc0003758.1_g000015 Rmu_sc0005711.1_g000009 Rmu_sc0012347.1_g000002
rosa_roxburghii	Rroxscaffold_1G00070900 Rroxscaffold_1G00070960
rosa_rugosa	Rorug04G0412300 Rorug04G0412700 Rorug04G0412800 Rorug04G0412900 Rorug04G0413000
rosa_samantha	Rh1AG116200 Rh1DG120600 Rh5AG040400 Rh5BG039900 Rh5CG043700 Rh5CG044200 Rh5CG224800 Rh5DG039500 Rh5DG039600 Rh5DG040200
rosa_wichuraiana	Rw1G009340 Rw5G003880 Rw5G003920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	14
AcoI	YGGCCR	1 cut(s)	119
AcuI	CTGAAG	1 cut(s)	53
AflIII	ACRYGT	1 cut(s)	357
AgsI	TTSAA	2 cut(s)	77, 458
AjnI	CCWGG	1 cut(s)	303
AluBI	AGCT	5 cut(s)	25, 37, 107, 176, 251
AluI	AGCT	5 cut(s)	25, 37, 107, 176, 251
Alw21I	GWGCWC	1 cut(s)	109
Alw26I	GTCTC	2 cut(s)	423, 448
AoxI	GGCC	1 cut(s)	119
ApeKI	GCWGC	1 cut(s)	425
AsuHPI	GGTGA	1 cut(s)	31
BalI	TGGCCA	1 cut(s)	121
BanII	GRGCYC	1 cut(s)	109
Bbv12I	GWGCWC	1 cut(s)	109
BbvI	GCAGC	1 cut(s)	412
BccI	CCATC	3 cut(s)	50, 95, 118
BciT130I	CCWGG	1 cut(s)	305
BcoDI	GTCTC	2 cut(s)	423, 448
BisI	GCNGC	1 cut(s)	426
BlsI	GCNGC	1 cut(s)	427
Bme1390I	CCNGG	1 cut(s)	305
BmiI	GGNNCC	1 cut(s)	302
BmrFI	CCNGG	1 cut(s)	305
BpmI	CTGGAG	1 cut(s)	287
BsaJI	CCNNGG	2 cut(s)	168, 304
BsaXI	ACNNNNNCTCC	1 cut(s)	26
BseBI	CCWGG	1 cut(s)	305
BseDI	CCNNGG	2 cut(s)	168, 304
BseGI	GGATG	1 cut(s)	110
BseMII	CTCAG	1 cut(s)	266
BseRI	GAGGAG	1 cut(s)	436
BseXI	GCAGC	1 cut(s)	412
BshFI	GGCC	1 cut(s)	121
BsiHKAI	GWGCWC	1 cut(s)	109
BsmAI	GTCTC	2 cut(s)	423, 448
BsnI	GGCC	1 cut(s)	121
Bsp1286I	GDGCHC	1 cut(s)	109
BspANI	GGCC	1 cut(s)	121
BspCNI	CTCAG	1 cut(s)	265
BspLI	GGNNCC	1 cut(s)	302
BspQI	GCTCTTC	1 cut(s)	229
BssECI	CCNNGG	2 cut(s)	168, 304
BssT1I	CCWWGG	1 cut(s)	168
Bst2UI	CCWGG	1 cut(s)	305
Bst4CI	ACNGT	2 cut(s)	205, 369
Bst6I	CTCTTC	1 cut(s)	229
BstDEI	CTNAG	1 cut(s)	252
BstF5I	GGATG	1 cut(s)	110
BstMAI	GTCTC	2 cut(s)	423, 448
BstNI	CCWGG	1 cut(s)	305
BstNSI	RCATGY	1 cut(s)	361
BstSCI	CCNGG	1 cut(s)	303
BstV1I	GCAGC	1 cut(s)	412
BstXI	CCANNNNNNTGG	1 cut(s)	117
BsuRI	GGCC	1 cut(s)	121
BtsCI	GGATG	1 cut(s)	110
BtsI	GCAGTG	1 cut(s)	144
BtsIMutI	CAGTG	1 cut(s)	144
CviAII	CATG	1 cut(s)	358
DdeI	CTNAG	1 cut(s)	252
EaeI	YGGCCR	1 cut(s)	119
Eam1104I	CTCTTC	1 cut(s)	229
EarI	CTCTTC	1 cut(s)	229
Ecl136II	GAGCTC	1 cut(s)	107
Eco130I	CCWWGG	1 cut(s)	168
Eco24I	GRGCYC	1 cut(s)	109
Eco53kI	GAGCTC	1 cut(s)	107
Eco57I	CTGAAG	1 cut(s)	53
EcoICRI	GAGCTC	1 cut(s)	107
EcoRII	CCWGG	1 cut(s)	303
EcoT14I	CCWWGG	1 cut(s)	168
EcoT38I	GRGCYC	1 cut(s)	109
ErhI	CCWWGG	1 cut(s)	168
FaeI	CATG	1 cut(s)	361
FaiI	YATR	4 cut(s)	68, 118, 246, 359
FatI	CATG	1 cut(s)	357
FblI	GTMKAC	1 cut(s)	14
Fnu4HI	GCNGC	1 cut(s)	426
FokI	GGATG	1 cut(s)	97
FriOI	GRGCYC	1 cut(s)	109
Fsp4HI	GCNGC	1 cut(s)	426
GluI	GCNGC	1 cut(s)	426
GsuI	CTGGAG	1 cut(s)	287
HaeIII	GGCC	1 cut(s)	121
Hin1II	CATG	1 cut(s)	361
HincII	GTYRAC	3 cut(s)	9, 15, 208
HindII	GTYRAC	3 cut(s)	9, 15, 208
HindIII	AAGCTT	2 cut(s)	23, 174
HinfI	GANTC	2 cut(s)	5, 325
HphI	GGTGA	1 cut(s)	31
Hpy166II	GTNNAC	4 cut(s)	9, 15, 144, 208
Hpy188I	TCNGA	2 cut(s)	33, 255
Hpy8I	GTNNAC	4 cut(s)	9, 15, 144, 208
Hpy99I	CGWCG	1 cut(s)	16
HpyAV	CCTTC	2 cut(s)	403, 452
HpyCH4III	ACNGT	2 cut(s)	205, 369
HpyCH4IV	ACGT	1 cut(s)	11
HpyF3I	CTNAG	1 cut(s)	252
HpySE526I	ACGT	1 cut(s)	11
Hsp92II	CATG	1 cut(s)	361
LguI	GCTCTTC	1 cut(s)	229
LmnI	GCTCC	3 cut(s)	112, 154, 306
LpnPI	CCDG	6 cut(s)	177, 204, 282, 290, 317, 435
Lsp1109I	GCAGC	1 cut(s)	412
MaeII	ACGT	1 cut(s)	11
MboII	GAAGA	6 cut(s)	20, 37, 43, 89, 216, 334
MhlI	GDGCHC	1 cut(s)	109
MlsI	TGGCCA	1 cut(s)	121
MluCI	AATT	1 cut(s)	453
MluNI	TGGCCA	1 cut(s)	121
MlyI	GAGTC	1 cut(s)	14
MnlI	CCTC	6 cut(s)	136, 209, 269, 284, 455, 457
Mox20I	TGGCCA	1 cut(s)	121
MscI	TGGCCA	1 cut(s)	121
MseI	TTAA	3 cut(s)	314, 330, 452
MslI	CAYNNNNRTG	1 cut(s)	115
Msp20I	TGGCCA	1 cut(s)	121
MspR9I	CCNGG	1 cut(s)	305
MvaI	CCWGG	1 cut(s)	305
NlaIII	CATG	1 cut(s)	361
NlaIV	GGNNCC	1 cut(s)	302
NspI	RCATGY	1 cut(s)	361
PciI	ACATGT	1 cut(s)	357
PciSI	GCTCTTC	1 cut(s)	229
PfeI	GAWTC	1 cut(s)	325
PkrI	GCNGC	1 cut(s)	427
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
PscI	ACATGT	1 cut(s)	357
Psp124BI	GAGCTC	1 cut(s)	109
Psp6I	CCWGG	1 cut(s)	303
PspGI	CCWGG	1 cut(s)	303
PspN4I	GGNNCC	1 cut(s)	302
RseI	CAYNNNNRTG	1 cut(s)	115
SacI	GAGCTC	1 cut(s)	109
SalI	GTCGAC	1 cut(s)	13
SapI	GCTCTTC	1 cut(s)	229
SaqAI	TTAA	3 cut(s)	314, 330, 452
SatI	GCNGC	1 cut(s)	426
SchI	GAGTC	1 cut(s)	14
ScrFI	CCNGG	1 cut(s)	305
SduI	GDGCHC	1 cut(s)	109
SmiMI	CAYNNNNRTG	1 cut(s)	115
Sse9I	AATT	1 cut(s)	453
SstI	GAGCTC	1 cut(s)	109
StyD4I	CCNGG	1 cut(s)	303
StyI	CCWWGG	1 cut(s)	168
TaaI	ACNGT	2 cut(s)	205, 369
TaiI	ACGT	1 cut(s)	14
TaqI	TCGA	2 cut(s)	14, 103
TasI	AATT	1 cut(s)	453
TfiI	GAWTC	1 cut(s)	325
Tru1I	TTAA	3 cut(s)	314, 330, 452
Tru9I	TTAA	3 cut(s)	314, 330, 452
TscAI	CASTG	1 cut(s)	151
TseI	GCWGC	1 cut(s)	425
TspDTI	ATGAA	6 cut(s)	37, 43, 55, 89, 261, 341
TspRI	CASTG	1 cut(s)	151
XceI	RCATGY	1 cut(s)	361
XcmI	CCANNNNNNNNNTGG	1 cut(s)	294
XmiI	GTMKAC	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.