Prupe.4G126600_v2.0.a1

(E,E)-alpha-farnesene

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Forward (+)
6950949 .. 6953454
2506 bp
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UTR
Exon/CDS
Intron
Prupe.4G126600.2

Sequence Viewer

Length: 1674 bp
ATGCCAGATGAAATCCAAGCCTCTTCCTTGATACATGAAAGACGATCTGCCAATTACAAGCCAAATATTTGGAAGTATGGTTTCCTTGAATCTCTTAACAGTAAATACCACGGAGATGATTATACGAGGCAATCTGAGAAGCTAATAGAAGATGTAAAGAATCATATGTTCTTTGTTGGAACAAAAGATTTGATAACTCAATTGAAGTTGATTGACAGCATCGGAAAACTAGGCCTCACGAATCACTTTGAAAAGGAAATTAAGGAAGCTCTAGACACAATAGCATCTACTGAAAATAACGATCCCCACATGACAGAGAACCTTTACGCTATTGCGTTGCACTTTAAGATCCTTAGGCAGCATGGCTATAAAGTATCACAAGATGTATTTGATGGCTTCTTGGATGAGAAGGGTATGTTAGAGAAAAGCCATTTTTCAGATGTCAAAGGAATGCTTGAACTTTTGGAGGCCTCAAACCTGGCTTTAGACGGGGAAAATGTCTTAGATGAGGCGAAAGCTTTCTCTACGTTAGCTCTCAGAGATTCCAATATCTGTAATATTCTGGACAATAACCTTGCGAGGCATGTGGTCCATGCTTTGGAGCTTTCATCACATCGAAGAGTAGGGTGGTTTAATGTCAAATGGCACATACATGCCTATGAGAAAGACAATCACGTCAAAACCATTTTACTTGAATTGGCTAAACTTAACTTTAACATGGTTCAAGCAACGCTGCAAAAAGATATAAAGGAAGCATCCAAGTGGTGGAACAATCTGGGCCACGCAGAACACTTGAAGTTTGTAAGAGATAGACCAGTCGAGTCTTTCATGTCTGCTGTGGGATTAAATTTCCAGCCTGACTACACATCTTTTAGAATACGGCTTACTAAAGTCATCTACTTGATTCTGATAATAGACGACGTTTATGACGTCTATGGCTCACTGGAAGAGCTAAAGCTCTTCACCAACGCCGTCGATAGGTGGGATGTTGGGGAAACGGGGCAGCTTCCAGATTGTATGAAGATCTGTTTCCAAGTGCTCTACAACACTACTTGTGAAATTGCTCATGAAATTGAGGAGGAGAATGGCTGGAACCTAGTGTTACCTCATTTGAGCAAAGTGTGGGCAGATTTCTGTAAAGCATTACTATTGGAGGCAGAGTGGTACAGTAGCGGCTATACACCATCCCTTGAAGAGTACCTAAGTAATGGATGCATTTCATCATCAGCTTCAGTCCTTTTGGTTCATACATTTTTCTCCACAACTCGTCGTGATCAGCCAACCGAAGAGATTGCCGATTTTTGGCACAAGAATGAAGATTTTGTGAATAACATATCTCTGATAGTTCGGCTCACCAATGATCTGGCAACTTACCGGGCTGAACAAGAGAGAGGCGATGCTCCTTCAGCAATCCTATGTTACATGCCAGAGATGAATGTTTCTGAAAATATAGCCGAGATGAAGATTAAGGGCATCATAGACAAAGCGTGGAAGAAAATAAATGGGAAATGCTTGAGAACCCCACAAGTTCCTTTCCTCTCACCATTCATCAACATTGCCATAAATATTGCGCGAATGGTGCACAACCTTTACCAAGATGGAGATGGATTTGCTGATCAAGAAAAAGGCTCTCGGCTGATCCAGTCTCTACTAGCTGAGCCTTTACTGCTTTGA

Protein Analysis

558

Amino Acids

63.91

Weight (kDa)

5.43

Isoelectric Point (pI)

41.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 674
AatII GACGTC 1 cut(s) 933
AccB7I CCANNNNNTGG 2 cut(s) 598, 765
AccII CGCG 1 cut(s) 1573
AciI CCGC 1 cut(s) 1173
AclWI GGATC 3 cut(s) 296, 343, 1633
AcsI RAATTY 1 cut(s) 847
AcuI CTGAAG 2 cut(s) 1215, 1389
AcyI GRCGYC 1 cut(s) 930
AfaI GTAC 2 cut(s) 1166, 1199
AfiI CCNNNNNNNGG 4 cut(s) 598, 765, 978, 1302
AgsI TTSAA 8 cut(s) 89, 205, 251, 458, 695, 725, 796, 1193
AjiI CACGTC 1 cut(s) 676
AjnI CCWGG 1 cut(s) 477
Alw21I GWGCWC 2 cut(s) 1041, 1584
Alw26I GTCTC 1 cut(s) 1650
Alw44I GTGCAC 1 cut(s) 1580
AlwI GGATC 3 cut(s) 296, 343, 1633
AoxI GGCC 3 cut(s) 232, 468, 778
ApaLI GTGCAC 1 cut(s) 1580
ApeKI GCWGC 3 cut(s) 358, 733, 1003
ApoI RAATTY 1 cut(s) 847
Asp700I GAANNNNTTC 1 cut(s) 518
AspLEI GCGC 1 cut(s) 1573
AspS9I GGNCC 2 cut(s) 589, 778
AsuC2I CCSGG 1 cut(s) 1376
AsuHPI GGTGA 3 cut(s) 955, 1345, 1533
AvaII GGWCC 1 cut(s) 589
AxyI CCTNAGG 1 cut(s) 353
BaeGI GKGCMC 1 cut(s) 1584
Bbv12I GWGCWC 2 cut(s) 1041, 1584
BbvI GCAGC 3 cut(s) 370, 720, 1015
BccI CCATC 4 cut(s) 386, 1192, 1592, 1598
BceAI ACGGC 2 cut(s) 896, 956
BcgI CGANNNNNNTGC 2 cut(s) 1274, 1308
BciT130I CCWGG 1 cut(s) 479
BclI TGATCA 2 cut(s) 1273, 1615
BcnI CCSGG 1 cut(s) 1376
BcoDI GTCTC 1 cut(s) 1650
BfaI CTAG 4 cut(s) 230, 272, 1097, 1652
BglII AGATCT 1 cut(s) 1023
BisI GCNGC 4 cut(s) 359, 734, 1004, 1174
BlpI GCTNAGC 1 cut(s) 1656
BlsI GCNGC 4 cut(s) 360, 735, 1005, 1175
Bme1390I CCNGG 2 cut(s) 479, 1376
Bme18I GGWCC 1 cut(s) 589
BmgBI CACGTC 1 cut(s) 676
BmgT120I GGNCC 2 cut(s) 589, 778
BmiI GGNNCC 1 cut(s) 1094
BmrFI CCNGG 2 cut(s) 479, 1376
BmsI GCATC 6 cut(s) 228, 293, 764, 1202, 1387, 1482
Bpu1102I GCTNAGC 1 cut(s) 1656
BpuEI CTTGAG 1 cut(s) 1534
BpuMI CCSGG 1 cut(s) 1376
BsaHI GRCGYC 1 cut(s) 930
BsaJI CCNNGG 1 cut(s) 109
BsaXI ACNNNNNCTCC 2 cut(s) 1145, 1175
Bsc4I CCNNNNNNNGG 4 cut(s) 598, 765, 978, 1302
Bse1I ACTGG 3 cut(s) 815, 948, 1642
Bse21I CCTNAGG 1 cut(s) 353
Bse3DI GCAATG 1 cut(s) 1554
BseBI CCWGG 1 cut(s) 479
BseDI CCNNGG 1 cut(s) 109
BseGI GGATG 5 cut(s) 409, 755, 991, 1184, 1217
BseLI CCNNNNNNNGG 4 cut(s) 598, 765, 978, 1302
BseMI GCAATG 1 cut(s) 1554
BseMII CTCAG 3 cut(s) 126, 550, 1647
BseNI ACTGG 3 cut(s) 815, 948, 1642
BseRI GAGGAG 2 cut(s) 1091, 1094
BseSI GKGCMC 1 cut(s) 1584
BseXI GCAGC 3 cut(s) 370, 720, 1015
Bsh1236I CGCG 1 cut(s) 1573
BshFI GGCC 3 cut(s) 234, 470, 780
BsiHKAI GWGCWC 2 cut(s) 1041, 1584
BsiSI CCGG 1 cut(s) 1375
BslI CCNNNNNNNGG 4 cut(s) 598, 765, 978, 1302
BsmAI GTCTC 1 cut(s) 1650
BsmI GAATGC 1 cut(s) 456
BsnI GGCC 3 cut(s) 234, 470, 780
Bsp1286I GDGCHC 2 cut(s) 1041, 1584
Bsp143I GATC 8 cut(s) 44, 301, 348, 1023, 1273, 1360, 1615, 1638
Bsp1720I GCTNAGC 1 cut(s) 1656
BspACI CCGC 1 cut(s) 1173
BspANI GGCC 3 cut(s) 234, 470, 780
BspCNI CTCAG 3 cut(s) 127, 549, 1648
BspFNI CGCG 1 cut(s) 1573
BspHI TCATGA 1 cut(s) 1066
BspLI GGNNCC 1 cut(s) 1094
BspPI GGATC 3 cut(s) 296, 343, 1633
BspQI GCTCTTC 2 cut(s) 942, 965
BsrDI GCAATG 1 cut(s) 1554
BsrI ACTGG 3 cut(s) 815, 948, 1642
BssECI CCNNGG 1 cut(s) 109
BssMI GATC 8 cut(s) 44, 301, 348, 1023, 1273, 1360, 1615, 1638
BssNI GRCGYC 1 cut(s) 930
Bst2UI CCWGG 1 cut(s) 479
Bst4CI ACNGT 2 cut(s) 101, 1169
Bst6I CTCTTC 6 cut(s) 28, 613, 942, 965, 1188, 1281
BstACI GRCGYC 1 cut(s) 930
BstDEI CTNAG 6 cut(s) 135, 353, 502, 536, 1202, 1656
BstDSI CCRYGG 1 cut(s) 109
BstF5I GGATG 5 cut(s) 409, 755, 991, 1184, 1217
BstFNI CGCG 1 cut(s) 1573
BstHHI GCGC 1 cut(s) 1573
BstKTI GATC 8 cut(s) 47, 304, 351, 1026, 1276, 1363, 1618, 1641
BstMAI GTCTC 1 cut(s) 1650
BstMBI GATC 8 cut(s) 44, 301, 348, 1023, 1273, 1360, 1615, 1638
BstMWI GCNNNNNNNGC 3 cut(s) 1406, 1579, 1666
BstNI CCWGG 1 cut(s) 479
BstNSI RCATGY 3 cut(s) 587, 656, 1426
BstSCI CCNGG 2 cut(s) 477, 1374
BstSLI GKGCMC 1 cut(s) 1584
BstUI CGCG 1 cut(s) 1573
BstV1I GCAGC 3 cut(s) 370, 720, 1015
BstX2I RGATCY 2 cut(s) 348, 1023
BstXI CCANNNNNNTGG 2 cut(s) 69, 1363
BstYI RGATCY 2 cut(s) 348, 1023
Bsu36I CCTNAGG 1 cut(s) 353
BsuRI GGCC 3 cut(s) 234, 470, 780
BtgI CCRYGG 1 cut(s) 109
BtgZI GCGATG 1 cut(s) 1410
BtrI CACGTC 1 cut(s) 676
BtsCI GGATG 5 cut(s) 409, 755, 991, 1184, 1217
BtsIMutI CAGTG 1 cut(s) 941
CciI TCATGA 1 cut(s) 1066
CfoI GCGC 1 cut(s) 1573
Cfr13I GGNCC 2 cut(s) 589, 778
Csp6I GTAC 2 cut(s) 1165, 1198
CviQI GTAC 2 cut(s) 1165, 1198
DdeI CTNAG 6 cut(s) 135, 353, 502, 536, 1202, 1656
DpnI GATC 8 cut(s) 46, 303, 350, 1025, 1275, 1362, 1617, 1640
DpnII GATC 8 cut(s) 44, 301, 348, 1023, 1273, 1360, 1615, 1638
DrdI GACNNNNNNGTC 1 cut(s) 674
DseDI GACNNNNNNGTC 1 cut(s) 674
Eam1104I CTCTTC 6 cut(s) 28, 613, 942, 965, 1188, 1281
EarI CTCTTC 6 cut(s) 28, 613, 942, 965, 1188, 1281
Eco147I AGGCCT 2 cut(s) 234, 470
Eco47I GGWCC 1 cut(s) 589
Eco57I CTGAAG 2 cut(s) 1215, 1389
Eco81I CCTNAGG 1 cut(s) 353
EcoRII CCWGG 1 cut(s) 477
EcoT22I ATGCAT 1 cut(s) 1217
FalI AAGNNNNNCTT 2 cut(s) 438, 470
FauNDI CATATG 1 cut(s) 165
FbaI TGATCA 2 cut(s) 1273, 1615
Fnu4HI GCNGC 4 cut(s) 359, 734, 1004, 1174
FokI GGATG 5 cut(s) 416, 742, 998, 1171, 1224
Fsp4HI GCNGC 4 cut(s) 359, 734, 1004, 1174
FspBI CTAG 4 cut(s) 230, 272, 1097, 1652
GlaI GCGC 1 cut(s) 1572
GluI GCNGC 4 cut(s) 359, 734, 1004, 1174
HaeIII GGCC 3 cut(s) 234, 470, 780
HapII CCGG 1 cut(s) 1375
HhaI GCGC 1 cut(s) 1573
Hin1I GRCGYC 1 cut(s) 930
Hin6I GCGC 1 cut(s) 1571
HinP1I GCGC 1 cut(s) 1571
HindIII AAGCTT 1 cut(s) 516
HinfI GANTC 6 cut(s) 89, 160, 241, 542, 821, 904
HpaII CCGG 1 cut(s) 1375
HphI GGTGA 3 cut(s) 955, 1345, 1533
Hpy166II GTNNAC 1 cut(s) 1582
Hpy188I TCNGA 7 cut(s) 136, 224, 439, 539, 909, 1341, 1444
Hpy188III TCNNGA 7 cut(s) 238, 272, 563, 1010, 1067, 1271, 1619
Hpy8I GTNNAC 1 cut(s) 1582
Hpy99I CGWCG 3 cut(s) 923, 977, 1272
HpyAV CCTTC 2 cut(s) 403, 1413
HpyCH4III ACNGT 2 cut(s) 101, 1169
HpyCH4IV ACGT 4 cut(s) 527, 675, 921, 930
HpyCH4V TGCA 4 cut(s) 340, 736, 1215, 1582
HpyF10VI GCNNNNNNNGC 3 cut(s) 1406, 1579, 1666
HpyF3I CTNAG 6 cut(s) 135, 353, 502, 536, 1202, 1656
HpySE526I ACGT 4 cut(s) 527, 675, 921, 930
Hsp92I GRCGYC 1 cut(s) 930
HspAI GCGC 1 cut(s) 1571
Ksp22I TGATCA 2 cut(s) 1273, 1615
Kzo9I GATC 8 cut(s) 44, 301, 348, 1023, 1273, 1360, 1615, 1638
LguI GCTCTTC 2 cut(s) 942, 965
LmnI GCTCC 2 cut(s) 601, 1405
Lsp1109I GCAGC 3 cut(s) 370, 720, 1015
LweI GCATC 6 cut(s) 228, 293, 764, 1202, 1387, 1482
MaeI CTAG 4 cut(s) 230, 272, 1097, 1652
MaeII ACGT 4 cut(s) 527, 675, 921, 930
MaeIII GTNAC 2 cut(s) 1101, 1418
MalI GATC 8 cut(s) 46, 303, 350, 1025, 1275, 1362, 1617, 1640
MboI GATC 8 cut(s) 44, 301, 348, 1023, 1273, 1360, 1615, 1638
MfeI CAATTG 1 cut(s) 200
MflI RGATCY 2 cut(s) 348, 1023
MhlI GDGCHC 2 cut(s) 1041, 1584
MluCI AATT 7 cut(s) 52, 200, 258, 695, 847, 1059, 1071
MlyI GAGTC 1 cut(s) 830
MmeI TCCRAC 1 cut(s) 157
Mph1103I ATGCAT 1 cut(s) 1217
MroXI GAANNNNTTC 1 cut(s) 518
MseI TTAA 8 cut(s) 96, 261, 345, 633, 708, 714, 845, 1467
MslI CAYNNNNRTG 5 cut(s) 114, 651, 657, 760, 1311
MspI CCGG 1 cut(s) 1375
MspR9I CCNGG 2 cut(s) 479, 1376
MunI CAATTG 1 cut(s) 200
Mva1269I GAATGC 1 cut(s) 456
MvaI CCWGG 1 cut(s) 479
MvnI CGCG 1 cut(s) 1573
MwoI GCNNNNNNNGC 3 cut(s) 1406, 1579, 1666
NciI CCSGG 1 cut(s) 1376
NdeI CATATG 1 cut(s) 165
NdeII GATC 8 cut(s) 44, 301, 348, 1023, 1273, 1360, 1615, 1638
NlaIV GGNNCC 1 cut(s) 1094
NmeAIII GCCGAG 2 cut(s) 1480, 1612
NsiI ATGCAT 1 cut(s) 1217
NspI RCATGY 3 cut(s) 587, 656, 1426
PagI TCATGA 1 cut(s) 1066
PceI AGGCCT 2 cut(s) 234, 470
PciSI GCTCTTC 2 cut(s) 942, 965
PcsI WCGNNNNNNNCGW 1 cut(s) 927
PctI GAATGC 1 cut(s) 456
PdmI GAANNNNTTC 1 cut(s) 518
PfeI GAWTC 5 cut(s) 89, 160, 241, 542, 904
PflMI CCANNNNNTGG 2 cut(s) 598, 765
PkrI GCNGC 4 cut(s) 360, 735, 1005, 1175
PleI GAGTC 1 cut(s) 829
PpsI GAGTC 1 cut(s) 829
Psp6I CCWGG 1 cut(s) 477
PspGI CCWGG 1 cut(s) 477
PspN4I GGNNCC 1 cut(s) 1094
PspPI GGNCC 2 cut(s) 589, 778
PsuI RGATCY 2 cut(s) 348, 1023
RsaI GTAC 2 cut(s) 1166, 1199
RsaNI GTAC 2 cut(s) 1165, 1198
RseI CAYNNNNRTG 5 cut(s) 114, 651, 657, 760, 1311
SapI GCTCTTC 2 cut(s) 942, 965
SaqAI TTAA 8 cut(s) 96, 261, 345, 633, 708, 714, 845, 1467
SatI GCNGC 4 cut(s) 359, 734, 1004, 1174
Sau3AI GATC 8 cut(s) 44, 301, 348, 1023, 1273, 1360, 1615, 1638
Sau96I GGNCC 2 cut(s) 589, 778
SchI GAGTC 1 cut(s) 830
ScrFI CCNGG 2 cut(s) 479, 1376
SduI GDGCHC 2 cut(s) 1041, 1584
SfaNI GCATC 6 cut(s) 228, 293, 764, 1202, 1387, 1482
SinI GGWCC 1 cut(s) 589
SmiMI CAYNNNNRTG 5 cut(s) 114, 651, 657, 760, 1311
SmlI CTYRAG 1 cut(s) 1513
SmoI CTYRAG 1 cut(s) 1513
Sse9I AATT 7 cut(s) 52, 200, 258, 695, 847, 1059, 1071
SseBI AGGCCT 2 cut(s) 234, 470
SsiI CCGC 1 cut(s) 1173
SspI AATATT 3 cut(s) 67, 559, 1567
SspMI CTAG 4 cut(s) 230, 272, 1097, 1652
StuI AGGCCT 2 cut(s) 234, 470
StyD4I CCNGG 2 cut(s) 477, 1374
TaaI ACNGT 2 cut(s) 101, 1169
TaiI ACGT 4 cut(s) 530, 678, 924, 933
TaqI TCGA 3 cut(s) 616, 819, 975
TasI AATT 7 cut(s) 52, 200, 258, 695, 847, 1059, 1071
TauI GCSGC 1 cut(s) 1176
TfiI GAWTC 5 cut(s) 89, 160, 241, 542, 904
Tru1I TTAA 8 cut(s) 96, 261, 345, 633, 708, 714, 845, 1467
Tru9I TTAA 8 cut(s) 96, 261, 345, 633, 708, 714, 845, 1467
TscAI CASTG 1 cut(s) 948
TseI GCWGC 3 cut(s) 358, 733, 1003
TspGWI ACGGA 1 cut(s) 126
TspRI CASTG 1 cut(s) 948
Van91I CCANNNNNTGG 2 cut(s) 598, 765
VneI GTGCAC 1 cut(s) 1580
VpaK11BI GGWCC 1 cut(s) 589
XapI RAATTY 1 cut(s) 847
XbaI TCTAGA 1 cut(s) 271
XceI RCATGY 3 cut(s) 587, 656, 1426
XcmI CCANNNNNNNNNTGG 1 cut(s) 1601
XmnI GAANNNNTTC 1 cut(s) 518
XspI CTAG 4 cut(s) 230, 272, 1097, 1652
ZraI GACGTC 1 cut(s) 931
Zsp2I ATGCAT 1 cut(s) 1217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.