(E,E)-alpha-farnesene
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g03000 |
| malus_domestica | MD10G1311000.v1.1 |
| prunus_persica | Prupe.4G029900_v2.0.a1 Prupe.4G125200_v2.0.a1 Prupe.4G125300_v2.0.a1 Prupe.4G125300_v2.0.a1 Prupe.4G125500_v2.0.a1 Prupe.4G126400_v2.0.a1 Prupe.4G126600_v2.0.a1 Prupe.4G126600_v2.0.a1 |
| pyrus_communis | pycom10g26190 |
| rosa_chinensis | RchiOBHm_Chr1g0331201 RchiOBHm_Chr1g0331211 RchiOBHm_Chr5g0004591 RchiOBHm_Chr5g0004631 RchiOBHm_Chr5g0029171 RchiOBHm_Chr5g0029181 RchiOBHm_Chr5g0029221 RchiOBHm_Chr5g0029231 |
| rosa_laevigata | RLG00000031243 RLG00000031247 RLG00000031248 |
| rosa_multiflora | Rmu_sc0003758.1_g000015 Rmu_sc0005711.1_g000009 Rmu_sc0012347.1_g000002 |
| rosa_roxburghii | Rroxscaffold_1G00070900 Rroxscaffold_1G00070960 |
| rosa_rugosa | Rorug04G0412300 Rorug04G0412700 Rorug04G0412800 Rorug04G0412900 Rorug04G0413000 |
| rosa_samantha | Rh1AG116200 Rh1DG120600 Rh5AG040400 Rh5BG039900 Rh5CG043700 Rh5CG044200 Rh5CG224800 Rh5DG039500 Rh5DG039600 Rh5DG040200 |
| rosa_wichuraiana | Rw1G009340 Rw5G003880 Rw5G003920 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 674 |
| AatII | GACGTC | 1 cut(s) | 933 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 598, 765 |
| AccII | CGCG | 1 cut(s) | 1573 |
| AciI | CCGC | 1 cut(s) | 1173 |
| AclWI | GGATC | 3 cut(s) | 296, 343, 1633 |
| AcsI | RAATTY | 1 cut(s) | 847 |
| AcuI | CTGAAG | 2 cut(s) | 1215, 1389 |
| AcyI | GRCGYC | 1 cut(s) | 930 |
| AfaI | GTAC | 2 cut(s) | 1166, 1199 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 598, 765, 978, 1302 |
| AgsI | TTSAA | 8 cut(s) | 89, 205, 251, 458, 695, 725, 796, 1193 |
| AjiI | CACGTC | 1 cut(s) | 676 |
| AjnI | CCWGG | 1 cut(s) | 477 |
| Alw21I | GWGCWC | 2 cut(s) | 1041, 1584 |
| Alw26I | GTCTC | 1 cut(s) | 1650 |
| Alw44I | GTGCAC | 1 cut(s) | 1580 |
| AlwI | GGATC | 3 cut(s) | 296, 343, 1633 |
| AoxI | GGCC | 3 cut(s) | 232, 468, 778 |
| ApaLI | GTGCAC | 1 cut(s) | 1580 |
| ApeKI | GCWGC | 3 cut(s) | 358, 733, 1003 |
| ApoI | RAATTY | 1 cut(s) | 847 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 518 |
| AspLEI | GCGC | 1 cut(s) | 1573 |
| AspS9I | GGNCC | 2 cut(s) | 589, 778 |
| AsuC2I | CCSGG | 1 cut(s) | 1376 |
| AsuHPI | GGTGA | 3 cut(s) | 955, 1345, 1533 |
| AvaII | GGWCC | 1 cut(s) | 589 |
| AxyI | CCTNAGG | 1 cut(s) | 353 |
| BaeGI | GKGCMC | 1 cut(s) | 1584 |
| Bbv12I | GWGCWC | 2 cut(s) | 1041, 1584 |
| BbvI | GCAGC | 3 cut(s) | 370, 720, 1015 |
| BccI | CCATC | 4 cut(s) | 386, 1192, 1592, 1598 |
| BceAI | ACGGC | 2 cut(s) | 896, 956 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1274, 1308 |
| BciT130I | CCWGG | 1 cut(s) | 479 |
| BclI | TGATCA | 2 cut(s) | 1273, 1615 |
| BcnI | CCSGG | 1 cut(s) | 1376 |
| BcoDI | GTCTC | 1 cut(s) | 1650 |
| BfaI | CTAG | 4 cut(s) | 230, 272, 1097, 1652 |
| BglII | AGATCT | 1 cut(s) | 1023 |
| BisI | GCNGC | 4 cut(s) | 359, 734, 1004, 1174 |
| BlpI | GCTNAGC | 1 cut(s) | 1656 |
| BlsI | GCNGC | 4 cut(s) | 360, 735, 1005, 1175 |
| Bme1390I | CCNGG | 2 cut(s) | 479, 1376 |
| Bme18I | GGWCC | 1 cut(s) | 589 |
| BmgBI | CACGTC | 1 cut(s) | 676 |
| BmgT120I | GGNCC | 2 cut(s) | 589, 778 |
| BmiI | GGNNCC | 1 cut(s) | 1094 |
| BmrFI | CCNGG | 2 cut(s) | 479, 1376 |
| BmsI | GCATC | 6 cut(s) | 228, 293, 764, 1202, 1387, 1482 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1656 |
| BpuEI | CTTGAG | 1 cut(s) | 1534 |
| BpuMI | CCSGG | 1 cut(s) | 1376 |
| BsaHI | GRCGYC | 1 cut(s) | 930 |
| BsaJI | CCNNGG | 1 cut(s) | 109 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1145, 1175 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 598, 765, 978, 1302 |
| Bse1I | ACTGG | 3 cut(s) | 815, 948, 1642 |
| Bse21I | CCTNAGG | 1 cut(s) | 353 |
| Bse3DI | GCAATG | 1 cut(s) | 1554 |
| BseBI | CCWGG | 1 cut(s) | 479 |
| BseDI | CCNNGG | 1 cut(s) | 109 |
| BseGI | GGATG | 5 cut(s) | 409, 755, 991, 1184, 1217 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 598, 765, 978, 1302 |
| BseMI | GCAATG | 1 cut(s) | 1554 |
| BseMII | CTCAG | 3 cut(s) | 126, 550, 1647 |
| BseNI | ACTGG | 3 cut(s) | 815, 948, 1642 |
| BseRI | GAGGAG | 2 cut(s) | 1091, 1094 |
| BseSI | GKGCMC | 1 cut(s) | 1584 |
| BseXI | GCAGC | 3 cut(s) | 370, 720, 1015 |
| Bsh1236I | CGCG | 1 cut(s) | 1573 |
| BshFI | GGCC | 3 cut(s) | 234, 470, 780 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1041, 1584 |
| BsiSI | CCGG | 1 cut(s) | 1375 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 598, 765, 978, 1302 |
| BsmAI | GTCTC | 1 cut(s) | 1650 |
| BsmI | GAATGC | 1 cut(s) | 456 |
| BsnI | GGCC | 3 cut(s) | 234, 470, 780 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1041, 1584 |
| Bsp143I | GATC | 8 cut(s) | 44, 301, 348, 1023, 1273, 1360, 1615, 1638 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1656 |
| BspACI | CCGC | 1 cut(s) | 1173 |
| BspANI | GGCC | 3 cut(s) | 234, 470, 780 |
| BspCNI | CTCAG | 3 cut(s) | 127, 549, 1648 |
| BspFNI | CGCG | 1 cut(s) | 1573 |
| BspHI | TCATGA | 1 cut(s) | 1066 |
| BspLI | GGNNCC | 1 cut(s) | 1094 |
| BspPI | GGATC | 3 cut(s) | 296, 343, 1633 |
| BspQI | GCTCTTC | 2 cut(s) | 942, 965 |
| BsrDI | GCAATG | 1 cut(s) | 1554 |
| BsrI | ACTGG | 3 cut(s) | 815, 948, 1642 |
| BssECI | CCNNGG | 1 cut(s) | 109 |
| BssMI | GATC | 8 cut(s) | 44, 301, 348, 1023, 1273, 1360, 1615, 1638 |
| BssNI | GRCGYC | 1 cut(s) | 930 |
| Bst2UI | CCWGG | 1 cut(s) | 479 |
| Bst4CI | ACNGT | 2 cut(s) | 101, 1169 |
| Bst6I | CTCTTC | 6 cut(s) | 28, 613, 942, 965, 1188, 1281 |
| BstACI | GRCGYC | 1 cut(s) | 930 |
| BstDEI | CTNAG | 6 cut(s) | 135, 353, 502, 536, 1202, 1656 |
| BstDSI | CCRYGG | 1 cut(s) | 109 |
| BstF5I | GGATG | 5 cut(s) | 409, 755, 991, 1184, 1217 |
| BstFNI | CGCG | 1 cut(s) | 1573 |
| BstHHI | GCGC | 1 cut(s) | 1573 |
| BstKTI | GATC | 8 cut(s) | 47, 304, 351, 1026, 1276, 1363, 1618, 1641 |
| BstMAI | GTCTC | 1 cut(s) | 1650 |
| BstMBI | GATC | 8 cut(s) | 44, 301, 348, 1023, 1273, 1360, 1615, 1638 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 1406, 1579, 1666 |
| BstNI | CCWGG | 1 cut(s) | 479 |
| BstNSI | RCATGY | 3 cut(s) | 587, 656, 1426 |
| BstSCI | CCNGG | 2 cut(s) | 477, 1374 |
| BstSLI | GKGCMC | 1 cut(s) | 1584 |
| BstUI | CGCG | 1 cut(s) | 1573 |
| BstV1I | GCAGC | 3 cut(s) | 370, 720, 1015 |
| BstX2I | RGATCY | 2 cut(s) | 348, 1023 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 69, 1363 |
| BstYI | RGATCY | 2 cut(s) | 348, 1023 |
| Bsu36I | CCTNAGG | 1 cut(s) | 353 |
| BsuRI | GGCC | 3 cut(s) | 234, 470, 780 |
| BtgI | CCRYGG | 1 cut(s) | 109 |
| BtgZI | GCGATG | 1 cut(s) | 1410 |
| BtrI | CACGTC | 1 cut(s) | 676 |
| BtsCI | GGATG | 5 cut(s) | 409, 755, 991, 1184, 1217 |
| BtsIMutI | CAGTG | 1 cut(s) | 941 |
| CciI | TCATGA | 1 cut(s) | 1066 |
| CfoI | GCGC | 1 cut(s) | 1573 |
| Cfr13I | GGNCC | 2 cut(s) | 589, 778 |
| Csp6I | GTAC | 2 cut(s) | 1165, 1198 |
| CviQI | GTAC | 2 cut(s) | 1165, 1198 |
| DdeI | CTNAG | 6 cut(s) | 135, 353, 502, 536, 1202, 1656 |
| DpnI | GATC | 8 cut(s) | 46, 303, 350, 1025, 1275, 1362, 1617, 1640 |
| DpnII | GATC | 8 cut(s) | 44, 301, 348, 1023, 1273, 1360, 1615, 1638 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 674 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 674 |
| Eam1104I | CTCTTC | 6 cut(s) | 28, 613, 942, 965, 1188, 1281 |
| EarI | CTCTTC | 6 cut(s) | 28, 613, 942, 965, 1188, 1281 |
| Eco147I | AGGCCT | 2 cut(s) | 234, 470 |
| Eco47I | GGWCC | 1 cut(s) | 589 |
| Eco57I | CTGAAG | 2 cut(s) | 1215, 1389 |
| Eco81I | CCTNAGG | 1 cut(s) | 353 |
| EcoRII | CCWGG | 1 cut(s) | 477 |
| EcoT22I | ATGCAT | 1 cut(s) | 1217 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 438, 470 |
| FauNDI | CATATG | 1 cut(s) | 165 |
| FbaI | TGATCA | 2 cut(s) | 1273, 1615 |
| Fnu4HI | GCNGC | 4 cut(s) | 359, 734, 1004, 1174 |
| FokI | GGATG | 5 cut(s) | 416, 742, 998, 1171, 1224 |
| Fsp4HI | GCNGC | 4 cut(s) | 359, 734, 1004, 1174 |
| FspBI | CTAG | 4 cut(s) | 230, 272, 1097, 1652 |
| GlaI | GCGC | 1 cut(s) | 1572 |
| GluI | GCNGC | 4 cut(s) | 359, 734, 1004, 1174 |
| HaeIII | GGCC | 3 cut(s) | 234, 470, 780 |
| HapII | CCGG | 1 cut(s) | 1375 |
| HhaI | GCGC | 1 cut(s) | 1573 |
| Hin1I | GRCGYC | 1 cut(s) | 930 |
| Hin6I | GCGC | 1 cut(s) | 1571 |
| HinP1I | GCGC | 1 cut(s) | 1571 |
| HindIII | AAGCTT | 1 cut(s) | 516 |
| HinfI | GANTC | 6 cut(s) | 89, 160, 241, 542, 821, 904 |
| HpaII | CCGG | 1 cut(s) | 1375 |
| HphI | GGTGA | 3 cut(s) | 955, 1345, 1533 |
| Hpy166II | GTNNAC | 1 cut(s) | 1582 |
| Hpy188I | TCNGA | 7 cut(s) | 136, 224, 439, 539, 909, 1341, 1444 |
| Hpy188III | TCNNGA | 7 cut(s) | 238, 272, 563, 1010, 1067, 1271, 1619 |
| Hpy8I | GTNNAC | 1 cut(s) | 1582 |
| Hpy99I | CGWCG | 3 cut(s) | 923, 977, 1272 |
| HpyAV | CCTTC | 2 cut(s) | 403, 1413 |
| HpyCH4III | ACNGT | 2 cut(s) | 101, 1169 |
| HpyCH4IV | ACGT | 4 cut(s) | 527, 675, 921, 930 |
| HpyCH4V | TGCA | 4 cut(s) | 340, 736, 1215, 1582 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 1406, 1579, 1666 |
| HpyF3I | CTNAG | 6 cut(s) | 135, 353, 502, 536, 1202, 1656 |
| HpySE526I | ACGT | 4 cut(s) | 527, 675, 921, 930 |
| Hsp92I | GRCGYC | 1 cut(s) | 930 |
| HspAI | GCGC | 1 cut(s) | 1571 |
| Ksp22I | TGATCA | 2 cut(s) | 1273, 1615 |
| Kzo9I | GATC | 8 cut(s) | 44, 301, 348, 1023, 1273, 1360, 1615, 1638 |
| LguI | GCTCTTC | 2 cut(s) | 942, 965 |
| LmnI | GCTCC | 2 cut(s) | 601, 1405 |
| Lsp1109I | GCAGC | 3 cut(s) | 370, 720, 1015 |
| LweI | GCATC | 6 cut(s) | 228, 293, 764, 1202, 1387, 1482 |
| MaeI | CTAG | 4 cut(s) | 230, 272, 1097, 1652 |
| MaeII | ACGT | 4 cut(s) | 527, 675, 921, 930 |
| MaeIII | GTNAC | 2 cut(s) | 1101, 1418 |
| MalI | GATC | 8 cut(s) | 46, 303, 350, 1025, 1275, 1362, 1617, 1640 |
| MboI | GATC | 8 cut(s) | 44, 301, 348, 1023, 1273, 1360, 1615, 1638 |
| MfeI | CAATTG | 1 cut(s) | 200 |
| MflI | RGATCY | 2 cut(s) | 348, 1023 |
| MhlI | GDGCHC | 2 cut(s) | 1041, 1584 |
| MluCI | AATT | 7 cut(s) | 52, 200, 258, 695, 847, 1059, 1071 |
| MlyI | GAGTC | 1 cut(s) | 830 |
| MmeI | TCCRAC | 1 cut(s) | 157 |
| Mph1103I | ATGCAT | 1 cut(s) | 1217 |
| MroXI | GAANNNNTTC | 1 cut(s) | 518 |
| MseI | TTAA | 8 cut(s) | 96, 261, 345, 633, 708, 714, 845, 1467 |
| MslI | CAYNNNNRTG | 5 cut(s) | 114, 651, 657, 760, 1311 |
| MspI | CCGG | 1 cut(s) | 1375 |
| MspR9I | CCNGG | 2 cut(s) | 479, 1376 |
| MunI | CAATTG | 1 cut(s) | 200 |
| Mva1269I | GAATGC | 1 cut(s) | 456 |
| MvaI | CCWGG | 1 cut(s) | 479 |
| MvnI | CGCG | 1 cut(s) | 1573 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 1406, 1579, 1666 |
| NciI | CCSGG | 1 cut(s) | 1376 |
| NdeI | CATATG | 1 cut(s) | 165 |
| NdeII | GATC | 8 cut(s) | 44, 301, 348, 1023, 1273, 1360, 1615, 1638 |
| NlaIV | GGNNCC | 1 cut(s) | 1094 |
| NmeAIII | GCCGAG | 2 cut(s) | 1480, 1612 |
| NsiI | ATGCAT | 1 cut(s) | 1217 |
| NspI | RCATGY | 3 cut(s) | 587, 656, 1426 |
| PagI | TCATGA | 1 cut(s) | 1066 |
| PceI | AGGCCT | 2 cut(s) | 234, 470 |
| PciSI | GCTCTTC | 2 cut(s) | 942, 965 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 927 |
| PctI | GAATGC | 1 cut(s) | 456 |
| PdmI | GAANNNNTTC | 1 cut(s) | 518 |
| PfeI | GAWTC | 5 cut(s) | 89, 160, 241, 542, 904 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 598, 765 |
| PkrI | GCNGC | 4 cut(s) | 360, 735, 1005, 1175 |
| PleI | GAGTC | 1 cut(s) | 829 |
| PpsI | GAGTC | 1 cut(s) | 829 |
| Psp6I | CCWGG | 1 cut(s) | 477 |
| PspGI | CCWGG | 1 cut(s) | 477 |
| PspN4I | GGNNCC | 1 cut(s) | 1094 |
| PspPI | GGNCC | 2 cut(s) | 589, 778 |
| PsuI | RGATCY | 2 cut(s) | 348, 1023 |
| RsaI | GTAC | 2 cut(s) | 1166, 1199 |
| RsaNI | GTAC | 2 cut(s) | 1165, 1198 |
| RseI | CAYNNNNRTG | 5 cut(s) | 114, 651, 657, 760, 1311 |
| SapI | GCTCTTC | 2 cut(s) | 942, 965 |
| SaqAI | TTAA | 8 cut(s) | 96, 261, 345, 633, 708, 714, 845, 1467 |
| SatI | GCNGC | 4 cut(s) | 359, 734, 1004, 1174 |
| Sau3AI | GATC | 8 cut(s) | 44, 301, 348, 1023, 1273, 1360, 1615, 1638 |
| Sau96I | GGNCC | 2 cut(s) | 589, 778 |
| SchI | GAGTC | 1 cut(s) | 830 |
| ScrFI | CCNGG | 2 cut(s) | 479, 1376 |
| SduI | GDGCHC | 2 cut(s) | 1041, 1584 |
| SfaNI | GCATC | 6 cut(s) | 228, 293, 764, 1202, 1387, 1482 |
| SinI | GGWCC | 1 cut(s) | 589 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 114, 651, 657, 760, 1311 |
| SmlI | CTYRAG | 1 cut(s) | 1513 |
| SmoI | CTYRAG | 1 cut(s) | 1513 |
| Sse9I | AATT | 7 cut(s) | 52, 200, 258, 695, 847, 1059, 1071 |
| SseBI | AGGCCT | 2 cut(s) | 234, 470 |
| SsiI | CCGC | 1 cut(s) | 1173 |
| SspI | AATATT | 3 cut(s) | 67, 559, 1567 |
| SspMI | CTAG | 4 cut(s) | 230, 272, 1097, 1652 |
| StuI | AGGCCT | 2 cut(s) | 234, 470 |
| StyD4I | CCNGG | 2 cut(s) | 477, 1374 |
| TaaI | ACNGT | 2 cut(s) | 101, 1169 |
| TaiI | ACGT | 4 cut(s) | 530, 678, 924, 933 |
| TaqI | TCGA | 3 cut(s) | 616, 819, 975 |
| TasI | AATT | 7 cut(s) | 52, 200, 258, 695, 847, 1059, 1071 |
| TauI | GCSGC | 1 cut(s) | 1176 |
| TfiI | GAWTC | 5 cut(s) | 89, 160, 241, 542, 904 |
| Tru1I | TTAA | 8 cut(s) | 96, 261, 345, 633, 708, 714, 845, 1467 |
| Tru9I | TTAA | 8 cut(s) | 96, 261, 345, 633, 708, 714, 845, 1467 |
| TscAI | CASTG | 1 cut(s) | 948 |
| TseI | GCWGC | 3 cut(s) | 358, 733, 1003 |
| TspGWI | ACGGA | 1 cut(s) | 126 |
| TspRI | CASTG | 1 cut(s) | 948 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 598, 765 |
| VneI | GTGCAC | 1 cut(s) | 1580 |
| VpaK11BI | GGWCC | 1 cut(s) | 589 |
| XapI | RAATTY | 1 cut(s) | 847 |
| XbaI | TCTAGA | 1 cut(s) | 271 |
| XceI | RCATGY | 3 cut(s) | 587, 656, 1426 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1601 |
| XmnI | GAANNNNTTC | 1 cut(s) | 518 |
| XspI | CTAG | 4 cut(s) | 230, 272, 1097, 1652 |
| ZraI | GACGTC | 1 cut(s) | 931 |
| Zsp2I | ATGCAT | 1 cut(s) | 1217 |