Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0002039

Physical Location & Seq

Genomic Coordinates Reverse (-)

27594650 .. 27596800

Gene Structure 2151 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g26190.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGAGTTTAGAGTTCACTTGCATGCTGATCATGAGCAGAAAATTCTTCAAAACCAAATGAAACCCGAACATGAAGCCTCTTACTTGATTAATCAAAGACGATCTGCAAATTACAAACCAAATATTTGGAAGAATGATTTCCTAGATCAATCTCTTATCAGCAAATACGATGGAGATGAGTATCGGAAGCTGTCTGAGAAGTTAATAGAAGAAGTTAAGATTTATATATCTGCTGAAACAAAGGATTTAGTGGCTAAGTTGGAGCTCATTGACAGCGTCCGAAAACTAGGCCTCGCGAACCACTTCGAAAAGGAAATCAAGGAAGCCCTAGACGGCATTGCAGCTATCGAAAGCGACAATCTCGGCACAAGAGACGATCTCTATGGTACTGCATTACACTTCAAGATCCTCAGGCAGCATGGCTATAAAGTTTCACAAGATATATTTGGTAGATTCATGGATGAAAAGGACACATTAGAGAACCACCATTTCGCGCATTTGAAAGGAATGCTGGAACTTTTCGAGGCCTCAAACCTGGGTTTCGAAGGTGAAGATATTTTAGATGAGGCGAAAGCTTCCTTGACGCTAGCTCTCAGAGATAGTGGTCATATTTGTTATCCGGACAGTAACCTTTCCAGGGACGTAGTTCATTCCCTGGAGCTTCCATCACACCGCAGAGTGCAGTGGTTTGATGTCAAATGGCAAATCAACGCCTATGAAAAAGACATTTGTCGCGTCAACGCCACGTTACTCGGATTAGCAAAGCTTAATTTCAACATGGTTCAGGCCCAACTCCAAAAAGACTTAAGGGAAGCATCCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006720 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009987 GO:0010333 GO:0010334 GO:0016829 GO:0016835 GO:0016838 GO:0042214 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0046246 GO:0051761 GO:0051762 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00909 ko01110 map00909 map01110

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

275

Amino Acids

31.75

Weight (kDa)

5.72

Isoelectric Point (pI)

31.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002039)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g03000
malus_domestica	MD10G1311000.v1.1
prunus_persica	Prupe.4G029900_v2.0.a1 Prupe.4G125200_v2.0.a1 Prupe.4G125300_v2.0.a1 Prupe.4G125300_v2.0.a1 Prupe.4G125500_v2.0.a1 Prupe.4G126400_v2.0.a1 Prupe.4G126600_v2.0.a1 Prupe.4G126600_v2.0.a1
pyrus_communis	pycom10g26190
rosa_chinensis	RchiOBHm_Chr1g0331201 RchiOBHm_Chr1g0331211 RchiOBHm_Chr5g0004591 RchiOBHm_Chr5g0004631 RchiOBHm_Chr5g0029171 RchiOBHm_Chr5g0029181 RchiOBHm_Chr5g0029221 RchiOBHm_Chr5g0029231
rosa_laevigata	RLG00000031243 RLG00000031247 RLG00000031248
rosa_multiflora	Rmu_sc0003758.1_g000015 Rmu_sc0005711.1_g000009 Rmu_sc0012347.1_g000002
rosa_roxburghii	Rroxscaffold_1G00070900 Rroxscaffold_1G00070960
rosa_rugosa	Rorug04G0412300 Rorug04G0412700 Rorug04G0412800 Rorug04G0412900 Rorug04G0413000
rosa_samantha	Rh1AG116200 Rh1DG120600 Rh5AG040400 Rh5BG039900 Rh5CG043700 Rh5CG044200 Rh5CG224800 Rh5DG039500 Rh5DG039600 Rh5DG040200
rosa_wichuraiana	Rw1G009340 Rw5G003880 Rw5G003920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	296, 494, 735
AccIII	TCCGGA	1 cut(s)	619
AciI	CCGC	1 cut(s)	673
AclWI	GGATC	1 cut(s)	400
AcsI	RAATTY	1 cut(s)	42
AfaI	GTAC	1 cut(s)	388
AfiI	CCNNNNNNNGG	1 cut(s)	637
AflII	CTTAAG	1 cut(s)	805
AgsI	TTSAA	4 cut(s)	50, 403, 502, 775
AjnI	CCWGG	3 cut(s)	534, 635, 654
AluBI	AGCT	7 cut(s)	190, 265, 344, 575, 590, 661, 766
AluI	AGCT	7 cut(s)	190, 265, 344, 575, 590, 661, 766
Alw21I	GWGCWC	1 cut(s)	267
Alw26I	GTCTC	1 cut(s)	366
AlwI	GGATC	1 cut(s)	400
Aor13HI	TCCGGA	1 cut(s)	619
AoxI	GGCC	3 cut(s)	289, 525, 786
ApeKI	GCWGC	2 cut(s)	341, 415
ApoI	RAATTY	1 cut(s)	42
AseI	ATTAAT	1 cut(s)	90
Asp700I	GAANNNNTTC	2 cut(s)	137, 302
AspLEI	GCGC	1 cut(s)	496
AspS9I	GGNCC	1 cut(s)	787
AsuHPI	GGTGA	1 cut(s)	560
AsuII	TTCGAA	2 cut(s)	306, 543
AsuNHI	GCTAGC	1 cut(s)	586
AxyI	CCTNAGG	1 cut(s)	410
BanII	GRGCYC	1 cut(s)	267
Bbv12I	GWGCWC	1 cut(s)	267
BbvI	GCAGC	2 cut(s)	353, 427
BccI	CCATC	2 cut(s)	164, 673
BceAI	ACGGC	1 cut(s)	349
BciT130I	CCWGG	3 cut(s)	536, 637, 656
BclI	TGATCA	1 cut(s)	28
BcoDI	GTCTC	1 cut(s)	366
BfaI	CTAG	4 cut(s)	143, 287, 329, 587
BfrI	CTTAAG	1 cut(s)	805
BisI	GCNGC	2 cut(s)	342, 416
BlsI	GCNGC	2 cut(s)	343, 417
Bme1390I	CCNGG	3 cut(s)	536, 637, 656
BmgT120I	GGNCC	1 cut(s)	787
BmrFI	CCNGG	3 cut(s)	536, 637, 656
BmtI	GCTAGC	1 cut(s)	590
BoxI	GACNNNNGTC	1 cut(s)	729
BplI	GAGNNNNNCTC	2 cut(s)	363, 395
BpmI	CTGGAG	1 cut(s)	677
Bpu14I	TTCGAA	2 cut(s)	306, 543
BsaBI	GATNNNNATC	1 cut(s)	180
BsaJI	CCNNGG	3 cut(s)	535, 636, 654
BsaWI	WCCGGW	1 cut(s)	619
Bsc4I	CCNNNNNNNGG	1 cut(s)	637
Bse21I	CCTNAGG	1 cut(s)	410
Bse3DI	GCAATG	1 cut(s)	336
Bse8I	GATNNNNATC	1 cut(s)	180
BseAI	TCCGGA	1 cut(s)	619
BseBI	CCWGG	3 cut(s)	536, 637, 656
BseDI	CCNNGG	3 cut(s)	535, 636, 654
BseGI	GGATG	2 cut(s)	466, 815
BseJI	GATNNNNATC	1 cut(s)	180
BseLI	CCNNNNNNNGG	1 cut(s)	637
BseMI	GCAATG	1 cut(s)	336
BseMII	CTCAG	3 cut(s)	186, 424, 607
BseXI	GCAGC	2 cut(s)	353, 427
BsgI	GTGCAG	1 cut(s)	701
Bsh1236I	CGCG	3 cut(s)	296, 494, 735
BshFI	GGCC	3 cut(s)	291, 527, 788
BsiHKAI	GWGCWC	1 cut(s)	267
BsiSI	CCGG	1 cut(s)	620
BslFI	GGGAC	1 cut(s)	653
BslI	CCNNNNNNNGG	1 cut(s)	637
BsmAI	GTCTC	1 cut(s)	366
BsmBI	CGTCTC	1 cut(s)	366
BsmFI	GGGAC	1 cut(s)	653
BsmI	GAATGC	1 cut(s)	513
BsnI	GGCC	3 cut(s)	291, 527, 788
Bsp119I	TTCGAA	2 cut(s)	306, 543
Bsp1286I	GDGCHC	1 cut(s)	267
Bsp13I	TCCGGA	1 cut(s)	619
Bsp143I	GATC	5 cut(s)	28, 101, 145, 376, 405
Bsp68I	TCGCGA	1 cut(s)	296
BspACI	CCGC	1 cut(s)	673
BspANI	GGCC	3 cut(s)	291, 527, 788
BspCNI	CTCAG	3 cut(s)	187, 423, 606
BspEI	TCCGGA	1 cut(s)	619
BspFNI	CGCG	3 cut(s)	296, 494, 735
BspHI	TCATGA	1 cut(s)	31
BspOI	GCTAGC	1 cut(s)	590
BspPI	GGATC	1 cut(s)	400
BspT104I	TTCGAA	2 cut(s)	306, 543
BspTI	CTTAAG	1 cut(s)	805
BsrDI	GCAATG	1 cut(s)	336
BssECI	CCNNGG	3 cut(s)	535, 636, 654
BssMI	GATC	5 cut(s)	28, 101, 145, 376, 405
Bst2UI	CCWGG	3 cut(s)	536, 637, 656
Bst4CI	ACNGT	1 cut(s)	626
BstAFI	CTTAAG	1 cut(s)	805
BstBI	TTCGAA	2 cut(s)	306, 543
BstC8I	GCNNGC	2 cut(s)	24, 588
BstDEI	CTNAG	4 cut(s)	195, 255, 410, 593
BstF5I	GGATG	2 cut(s)	466, 815
BstFNI	CGCG	3 cut(s)	296, 494, 735
BstHHI	GCGC	1 cut(s)	496
BstKTI	GATC	5 cut(s)	31, 104, 148, 379, 408
BstMAI	GTCTC	1 cut(s)	366
BstMBI	GATC	5 cut(s)	28, 101, 145, 376, 405
BstNI	CCWGG	3 cut(s)	536, 637, 656
BstNSI	RCATGY	1 cut(s)	26
BstPAI	GACNNNNGTC	1 cut(s)	729
BstSCI	CCNGG	3 cut(s)	534, 635, 654
BstUI	CGCG	3 cut(s)	296, 494, 735
BstV1I	GCAGC	2 cut(s)	353, 427
BstX2I	RGATCY	1 cut(s)	405
BstXI	CCANNNNNNTGG	1 cut(s)	126
BstYI	RGATCY	1 cut(s)	405
Bsu36I	CCTNAGG	1 cut(s)	410
BsuRI	GGCC	3 cut(s)	291, 527, 788
BtsCI	GGATG	2 cut(s)	466, 815
BtsI	GCAGTG	1 cut(s)	689
BtsIMutI	CAGTG	1 cut(s)	689
BtuMI	TCGCGA	1 cut(s)	296
Cac8I	GCNNGC	2 cut(s)	24, 588
CciI	TCATGA	1 cut(s)	31
CfoI	GCGC	1 cut(s)	496
Cfr13I	GGNCC	1 cut(s)	787
CseI	GACGC	3 cut(s)	265, 592, 724
Csp6I	GTAC	1 cut(s)	387
CviAII	CATG	6 cut(s)	23, 32, 71, 419, 457, 778
CviQI	GTAC	1 cut(s)	387
DdeI	CTNAG	4 cut(s)	195, 255, 410, 593
DpnI	GATC	5 cut(s)	30, 103, 147, 378, 407
DpnII	GATC	5 cut(s)	28, 101, 145, 376, 405
Ecl136II	GAGCTC	1 cut(s)	265
Eco147I	AGGCCT	2 cut(s)	291, 527
Eco24I	GRGCYC	1 cut(s)	267
Eco53kI	GAGCTC	1 cut(s)	265
Eco81I	CCTNAGG	1 cut(s)	410
EcoICRI	GAGCTC	1 cut(s)	265
EcoRII	CCWGG	3 cut(s)	534, 635, 654
EcoT38I	GRGCYC	1 cut(s)	267
Esp3I	CGTCTC	1 cut(s)	366
FaeI	CATG	6 cut(s)	26, 35, 74, 422, 460, 781
FaqI	GGGAC	1 cut(s)	653
FatI	CATG	6 cut(s)	22, 31, 70, 418, 456, 777
FbaI	TGATCA	1 cut(s)	28
Fnu4HI	GCNGC	2 cut(s)	342, 416
FokI	GGATG	2 cut(s)	473, 802
FriOI	GRGCYC	1 cut(s)	267
Fsp4HI	GCNGC	2 cut(s)	342, 416
FspBI	CTAG	4 cut(s)	143, 287, 329, 587
GlaI	GCGC	1 cut(s)	495
GluI	GCNGC	2 cut(s)	342, 416
GsuI	CTGGAG	1 cut(s)	677
HaeIII	GGCC	3 cut(s)	291, 527, 788
HapII	CCGG	1 cut(s)	620
HgaI	GACGC	3 cut(s)	265, 592, 724
HhaI	GCGC	1 cut(s)	496
Hin1II	CATG	6 cut(s)	26, 35, 74, 422, 460, 781
Hin6I	GCGC	1 cut(s)	494
HinP1I	GCGC	1 cut(s)	494
HincII	GTYRAC	1 cut(s)	739
HindII	GTYRAC	1 cut(s)	739
HindIII	AAGCTT	2 cut(s)	573, 764
HinfI	GANTC	1 cut(s)	453
HpaII	CCGG	1 cut(s)	620
HphI	GGTGA	1 cut(s)	560
Hpy166II	GTNNAC	2 cut(s)	16, 739
Hpy188I	TCNGA	5 cut(s)	186, 196, 281, 596, 755
Hpy188III	TCNNGA	4 cut(s)	32, 295, 403, 620
Hpy8I	GTNNAC	2 cut(s)	16, 739
HpyAV	CCTTC	1 cut(s)	539
HpyCH4III	ACNGT	1 cut(s)	626
HpyCH4IV	ACGT	2 cut(s)	642, 746
HpyCH4V	TGCA	5 cut(s)	22, 107, 341, 392, 682
HpyF3I	CTNAG	4 cut(s)	195, 255, 410, 593
HpySE526I	ACGT	2 cut(s)	642, 746
Hsp92II	CATG	6 cut(s)	26, 35, 74, 422, 460, 781
HspAI	GCGC	1 cut(s)	494
Kpn2I	TCCGGA	1 cut(s)	619
Ksp22I	TGATCA	1 cut(s)	28
Kzo9I	GATC	5 cut(s)	28, 101, 145, 376, 405
LmnI	GCTCC	2 cut(s)	262, 658
Lsp1109I	GCAGC	2 cut(s)	353, 427
MaeI	CTAG	4 cut(s)	143, 287, 329, 587
MaeII	ACGT	2 cut(s)	642, 746
MaeIII	GTNAC	2 cut(s)	626, 747
MalI	GATC	5 cut(s)	30, 103, 147, 378, 407
MboI	GATC	5 cut(s)	28, 101, 145, 376, 405
MboII	GAAGA	4 cut(s)	38, 142, 221, 563
MflI	RGATCY	1 cut(s)	405
MhlI	GDGCHC	1 cut(s)	267
MluCI	AATT	4 cut(s)	42, 109, 769, 820
MmeI	TCCRAC	1 cut(s)	240
MnlI	CCTC	6 cut(s)	88, 302, 419, 517, 538, 559
MroI	TCCGGA	1 cut(s)	619
MroXI	GAANNNNTTC	2 cut(s)	137, 302
MseI	TTAA	6 cut(s)	90, 203, 216, 768, 806, 823
MslI	CAYNNNNRTG	1 cut(s)	21
MspCI	CTTAAG	1 cut(s)	805
MspI	CCGG	1 cut(s)	620
MspR9I	CCNGG	3 cut(s)	536, 637, 656
Mva1269I	GAATGC	1 cut(s)	513
MvaI	CCWGG	3 cut(s)	536, 637, 656
MvnI	CGCG	3 cut(s)	296, 494, 735
NdeII	GATC	5 cut(s)	28, 101, 145, 376, 405
NheI	GCTAGC	1 cut(s)	586
NlaIII	CATG	6 cut(s)	26, 35, 74, 422, 460, 781
NmeAIII	GCCGAG	1 cut(s)	342
NruI	TCGCGA	1 cut(s)	296
NspI	RCATGY	1 cut(s)	26
NspV	TTCGAA	2 cut(s)	306, 543
PaeI	GCATGC	1 cut(s)	26
PagI	TCATGA	1 cut(s)	31
PceI	AGGCCT	2 cut(s)	291, 527
PctI	GAATGC	1 cut(s)	513
PdmI	GAANNNNTTC	2 cut(s)	137, 302
PfeI	GAWTC	1 cut(s)	453
PflFI	GACNNNGTC	1 cut(s)	275
PkrI	GCNGC	2 cut(s)	343, 417
PshAI	GACNNNNGTC	1 cut(s)	729
PshBI	ATTAAT	1 cut(s)	90
Psp124BI	GAGCTC	1 cut(s)	267
Psp6I	CCWGG	3 cut(s)	534, 635, 654
PspGI	CCWGG	3 cut(s)	534, 635, 654
PspPI	GGNCC	1 cut(s)	787
PsuI	RGATCY	1 cut(s)	405
PsyI	GACNNNGTC	1 cut(s)	275
RruI	TCGCGA	1 cut(s)	296
RsaI	GTAC	1 cut(s)	388
RsaNI	GTAC	1 cut(s)	387
RseI	CAYNNNNRTG	1 cut(s)	21
SacI	GAGCTC	1 cut(s)	267
SaqAI	TTAA	6 cut(s)	90, 203, 216, 768, 806, 823
SatI	GCNGC	2 cut(s)	342, 416
Sau3AI	GATC	5 cut(s)	28, 101, 145, 376, 405
Sau96I	GGNCC	1 cut(s)	787
ScrFI	CCNGG	3 cut(s)	536, 637, 656
SduI	GDGCHC	1 cut(s)	267
SfuI	TTCGAA	2 cut(s)	306, 543
SmiMI	CAYNNNNRTG	1 cut(s)	21
SmlI	CTYRAG	1 cut(s)	805
SmoI	CTYRAG	1 cut(s)	805
SphI	GCATGC	1 cut(s)	26
Sse9I	AATT	4 cut(s)	42, 109, 769, 820
SseBI	AGGCCT	2 cut(s)	291, 527
SsiI	CCGC	1 cut(s)	673
SspI	AATATT	1 cut(s)	124
SspMI	CTAG	4 cut(s)	143, 287, 329, 587
SstI	GAGCTC	1 cut(s)	267
StuI	AGGCCT	2 cut(s)	291, 527
StyD4I	CCNGG	3 cut(s)	534, 635, 654
TaaI	ACNGT	1 cut(s)	626
TaiI	ACGT	2 cut(s)	645, 749
TaqI	TCGA	4 cut(s)	306, 348, 522, 543
TasI	AATT	4 cut(s)	42, 109, 769, 820
TfiI	GAWTC	1 cut(s)	453
Tru1I	TTAA	6 cut(s)	90, 203, 216, 768, 806, 823
Tru9I	TTAA	6 cut(s)	90, 203, 216, 768, 806, 823
TscAI	CASTG	1 cut(s)	689
TseI	GCWGC	2 cut(s)	341, 415
TspDTI	ATGAA	6 cut(s)	74, 87, 445, 477, 638, 732
TspRI	CASTG	1 cut(s)	689
Tth111I	GACNNNGTC	1 cut(s)	275
Vha464I	CTTAAG	1 cut(s)	805
VspI	ATTAAT	1 cut(s)	90
XapI	RAATTY	1 cut(s)	42
XceI	RCATGY	1 cut(s)	26
XmnI	GAANNNNTTC	2 cut(s)	137, 302
XspI	CTAG	4 cut(s)	143, 287, 329, 587

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.