Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002039

Physical Location & Seq

Genomic Coordinates Reverse (-)

22907252 .. 22908065

Gene Structure 814 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30864

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGCAGGCAGAATGTTATCGAATTCAGATTCAGAAGCTAATAGAAGATGTTAAGGATTTGTTTGGTGAATGTAAGGAATTAGGTTTACTAGCTAAGTTGGAGCTGATTGACAGCATCCAAAAACTAGGCCTGAACAGCTACTTTGAGAAGGAAATCAAGGAAACCCTAGACACCATAGCATCTGTCAAACTAAAAAACAATAGCAATCCCTTCATTAGTTCAGAGGGTGATCTCTACGGTACGGCACTACTCTTTAAGATTCTGAGGCAGCATGATGTATTTGGTGTTTTCATAGACGAAATTGGTACATCAAAGAAGAGCACATTTGGGGATGTGAAAGGAATGCTAGAACTTTTGGAGGCCTCAAACTTAGCTTTAGAAGGTGAAAACATCCTAGATGAGGCTAAAGCTTTCTTAATGGTCACTCTCAGAGATACCAATACCATGTGTGATGATATAGACCGTTGCATTTCCAAGCATGTGGCCTATGCCTTGAAGCTTTCATCACAAAGGAGAGTCCAGTGGTTTAATGTGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006720 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009987 GO:0010333 GO:0010334 GO:0016829 GO:0016835 GO:0016838 GO:0042214 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0046246 GO:0051761 GO:0051762 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00909 ko01110 map00909 map01110

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

179

Amino Acids

20.29

Weight (kDa)

5.18

Isoelectric Point (pI)

27.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Terpene_synth	PF01397	3 - 165	2e-32	Terpene synthase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002039)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g03000
malus_domestica	MD10G1311000.v1.1
prunus_persica	Prupe.4G029900_v2.0.a1 Prupe.4G125200_v2.0.a1 Prupe.4G125300_v2.0.a1 Prupe.4G125300_v2.0.a1 Prupe.4G125500_v2.0.a1 Prupe.4G126400_v2.0.a1 Prupe.4G126600_v2.0.a1 Prupe.4G126600_v2.0.a1
pyrus_communis	pycom10g26190
rosa_chinensis	RchiOBHm_Chr1g0331201 RchiOBHm_Chr1g0331211 RchiOBHm_Chr5g0004591 RchiOBHm_Chr5g0004631 RchiOBHm_Chr5g0029171 RchiOBHm_Chr5g0029181 RchiOBHm_Chr5g0029221 RchiOBHm_Chr5g0029231
rosa_laevigata	RLG00000031243 RLG00000031247 RLG00000031248
rosa_multiflora	Rmu_sc0003758.1_g000015 Rmu_sc0005711.1_g000009 Rmu_sc0012347.1_g000002
rosa_roxburghii	Rroxscaffold_1G00070900 Rroxscaffold_1G00070960
rosa_rugosa	Rorug04G0412300 Rorug04G0412700 Rorug04G0412800 Rorug04G0412900 Rorug04G0413000
rosa_samantha	Rh1AG116200 Rh1DG120600 Rh5AG040400 Rh5BG039900 Rh5CG043700 Rh5CG044200 Rh5CG224800 Rh5DG039500 Rh5DG039600 Rh5DG040200
rosa_wichuraiana	Rw1G009340 Rw5G003880 Rw5G003920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	21
AfaI	GTAC	2 cut(s)	241, 307
AfiI	CCNNNNNNNGG	1 cut(s)	400
AgsI	TTSAA	1 cut(s)	496
AluBI	AGCT	7 cut(s)	37, 92, 103, 138, 374, 410, 499
AluI	AGCT	7 cut(s)	37, 92, 103, 138, 374, 410, 499
Alw21I	GWGCWC	1 cut(s)	323
AoxI	GGCC	3 cut(s)	127, 360, 483
ApeKI	GCWGC	1 cut(s)	268
ApoI	RAATTY	1 cut(s)	21
AsuHPI	GGTGA	3 cut(s)	77, 239, 395
Bbv12I	GWGCWC	1 cut(s)	323
BbvI	GCAGC	1 cut(s)	280
BceAI	ACGGC	1 cut(s)	258
BfaI	CTAG	5 cut(s)	89, 125, 167, 347, 395
BisI	GCNGC	1 cut(s)	269
BlsI	GCNGC	1 cut(s)	270
BmsI	GCATC	2 cut(s)	123, 188
Bsc4I	CCNNNNNNNGG	1 cut(s)	400
Bse1I	ACTGG	1 cut(s)	520
BseGI	GGATG	3 cut(s)	114, 337, 390
BseLI	CCNNNNNNNGG	1 cut(s)	400
BseMII	CTCAG	2 cut(s)	254, 442
BseNI	ACTGG	1 cut(s)	520
BseXI	GCAGC	1 cut(s)	280
BshFI	GGCC	3 cut(s)	129, 362, 485
BsiHKAI	GWGCWC	1 cut(s)	323
BslI	CCNNNNNNNGG	1 cut(s)	400
BsmI	GAATGC	1 cut(s)	348
BsnI	GGCC	3 cut(s)	129, 362, 485
Bsp1286I	GDGCHC	1 cut(s)	323
Bsp143I	GATC	1 cut(s)	229
BspANI	GGCC	3 cut(s)	129, 362, 485
BspCNI	CTCAG	2 cut(s)	255, 441
BspQI	GCTCTTC	1 cut(s)	311
BsrI	ACTGG	1 cut(s)	520
BssMI	GATC	1 cut(s)	229
Bst4CI	ACNGT	2 cut(s)	239, 464
Bst6I	CTCTTC	1 cut(s)	311
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	4 cut(s)	93, 263, 370, 428
BstENI	CCTNNNNNAGG	1 cut(s)	398
BstF5I	GGATG	3 cut(s)	114, 337, 390
BstKTI	GATC	1 cut(s)	232
BstMBI	GATC	1 cut(s)	229
BstMWI	GCNNNNNNNGC	1 cut(s)	135
BstNSI	RCATGY	1 cut(s)	482
BstV1I	GCAGC	1 cut(s)	280
BstXI	CCANNNNNNTGG	1 cut(s)	481
BsuRI	GGCC	3 cut(s)	129, 362, 485
BtsCI	GGATG	3 cut(s)	114, 337, 390
BtsIMutI	CAGTG	1 cut(s)	527
Cac8I	GCNNGC	1 cut(s)	6
Csp6I	GTAC	2 cut(s)	240, 306
CviAII	CATG	3 cut(s)	272, 445, 479
CviQI	GTAC	2 cut(s)	240, 306
DdeI	CTNAG	4 cut(s)	93, 263, 370, 428
DpnI	GATC	1 cut(s)	231
DpnII	GATC	1 cut(s)	229
Eam1104I	CTCTTC	1 cut(s)	311
EarI	CTCTTC	1 cut(s)	311
Eco147I	AGGCCT	2 cut(s)	129, 362
EcoNI	CCTNNNNNAGG	1 cut(s)	398
EcoRI	GAATTC	1 cut(s)	21
FaeI	CATG	3 cut(s)	275, 448, 482
FaiI	YATR	7 cut(s)	176, 273, 293, 446, 458, 480, 489
FatI	CATG	3 cut(s)	271, 444, 478
Fnu4HI	GCNGC	1 cut(s)	269
FokI	GGATG	3 cut(s)	101, 344, 377
Fsp4HI	GCNGC	1 cut(s)	269
FspBI	CTAG	5 cut(s)	89, 125, 167, 347, 395
GluI	GCNGC	1 cut(s)	269
HaeIII	GGCC	3 cut(s)	129, 362, 485
Hin1II	CATG	3 cut(s)	275, 448, 482
HindIII	AAGCTT	2 cut(s)	408, 497
HinfI	GANTC	3 cut(s)	28, 259, 516
HphI	GGTGA	3 cut(s)	77, 239, 395
Hpy166II	GTNNAC	1 cut(s)	86
Hpy188I	TCNGA	5 cut(s)	27, 33, 223, 264, 431
Hpy8I	GTNNAC	1 cut(s)	86
HpyAV	CCTTC	3 cut(s)	142, 220, 374
HpyCH4III	ACNGT	2 cut(s)	239, 464
HpyCH4V	TGCA	2 cut(s)	4, 468
HpyF10VI	GCNNNNNNNGC	1 cut(s)	135
HpyF3I	CTNAG	4 cut(s)	93, 263, 370, 428
Hsp92II	CATG	3 cut(s)	275, 448, 482
Kzo9I	GATC	1 cut(s)	229
LguI	GCTCTTC	1 cut(s)	311
LmnI	GCTCC	1 cut(s)	100
LpnPI	CCDG	2 cut(s)	143, 533
Lsp1109I	GCAGC	1 cut(s)	280
LweI	GCATC	2 cut(s)	123, 188
MaeI	CTAG	5 cut(s)	89, 125, 167, 347, 395
MaeIII	GTNAC	1 cut(s)	421
MalI	GATC	1 cut(s)	231
MboI	GATC	1 cut(s)	229
MboII	GAAGA	2 cut(s)	56, 328
MhlI	GDGCHC	1 cut(s)	323
MluCI	AATT	3 cut(s)	21, 77, 300
MlyI	GAGTC	1 cut(s)	525
MmeI	TCCRAC	1 cut(s)	78
MnlI	CCTC	5 cut(s)	217, 258, 352, 373, 394
MseI	TTAA	4 cut(s)	51, 255, 416, 528
Mva1269I	GAATGC	1 cut(s)	348
MwoI	GCNNNNNNNGC	1 cut(s)	135
NdeII	GATC	1 cut(s)	229
NlaIII	CATG	3 cut(s)	275, 448, 482
NmuCI	GTSAC	1 cut(s)	421
NspI	RCATGY	1 cut(s)	482
PceI	AGGCCT	2 cut(s)	129, 362
PciSI	GCTCTTC	1 cut(s)	311
PctI	GAATGC	1 cut(s)	348
PfeI	GAWTC	2 cut(s)	28, 259
PkrI	GCNGC	1 cut(s)	270
PleI	GAGTC	1 cut(s)	524
PpsI	GAGTC	1 cut(s)	524
RsaI	GTAC	2 cut(s)	241, 307
RsaNI	GTAC	2 cut(s)	240, 306
SapI	GCTCTTC	1 cut(s)	311
SaqAI	TTAA	4 cut(s)	51, 255, 416, 528
SatI	GCNGC	1 cut(s)	269
Sau3AI	GATC	1 cut(s)	229
SchI	GAGTC	1 cut(s)	525
SduI	GDGCHC	1 cut(s)	323
SetI	ASST	9 cut(s)	39, 85, 94, 105, 140, 376, 385, 412, 501
SfaNI	GCATC	2 cut(s)	123, 188
Sse9I	AATT	3 cut(s)	21, 77, 300
SseBI	AGGCCT	2 cut(s)	129, 362
SspMI	CTAG	5 cut(s)	89, 125, 167, 347, 395
StuI	AGGCCT	2 cut(s)	129, 362
TaaI	ACNGT	2 cut(s)	239, 464
TaqI	TCGA	1 cut(s)	19
TasI	AATT	3 cut(s)	21, 77, 300
TfiI	GAWTC	2 cut(s)	28, 259
Tru1I	TTAA	4 cut(s)	51, 255, 416, 528
Tru9I	TTAA	4 cut(s)	51, 255, 416, 528
TscAI	CASTG	1 cut(s)	527
TseFI	GTSAC	1 cut(s)	421
TseI	GCWGC	1 cut(s)	268
Tsp45I	GTSAC	1 cut(s)	421
TspDTI	ATGAA	3 cut(s)	202, 280, 492
TspRI	CASTG	1 cut(s)	527
XagI	CCTNNNNNAGG	1 cut(s)	398
XapI	RAATTY	1 cut(s)	21
XceI	RCATGY	1 cut(s)	482
XspI	CTAG	5 cut(s)	89, 125, 167, 347, 395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.