Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002039

Physical Location & Seq

Genomic Coordinates Reverse (-)

22906030 .. 22907166

Gene Structure 1137 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30863

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGTTCAAGCCACACTCCAAAAAGATCTAAGGGAATCATCTAAGTGGTGGAACAATCTGGGTCTCACAAAGAACTTGGACTTTGCAAGAGATAGAATGGTGGAATGTTTCATGTGTGCTATGGGATTAGCTTTTGAGTCTCAGTACAAGTCTTTTAGAAAATCGCTGACTAAAGTTATCAATTTGATACTTATCATAGATGCCGTTTATGATGTTTATGGCTCGTTGGAAGAGCTAAATCACTTCACCAAAGCTGTTGAAAGGTGGGATGTTAGGGAAACTGAGCAGCTTCCGGAGTGTATGAAGATCTGTTTCCAAGTACTTTACAACACGACTTGTGAAACTGCTTACGAAATAGAGGAGGAGAAAGGTCGGAACCAAGTATTACATCATCTACGCAAAGTGTGGTACAATAAGGCCTACACACCGTCCTTTGAAGAGTACCATAGCAATGGTTGGATTTCATCATCGGCTTCGCTGATTTTCACTCATGCATTCTTCGCTAGAGCACATAAGGAGAGAATGGATCTAAGAAGCACCGAAACGGGTACGAGTTTTCAGATACGATACGATTGGAAACGTGGAAACGACAAATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006720 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009987 GO:0010333 GO:0010334 GO:0016829 GO:0016835 GO:0016838 GO:0042214 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0046246 GO:0051761 GO:0051762 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00909 ko01110 map00909 map01110

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

199

Amino Acids

23.57

Weight (kDa)

7.01

Isoelectric Point (pI)

46.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Terpene_synth_C	PF03936	19 - 171	1.2e-50	Terpene synthase family, metal binding domain
Terpene_syn_C_2	PF19086	58 - 170	7.3e-21	Terpene synthase family 2, C-terminal metal binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002039)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g03000
malus_domestica	MD10G1311000.v1.1
prunus_persica	Prupe.4G029900_v2.0.a1 Prupe.4G125200_v2.0.a1 Prupe.4G125300_v2.0.a1 Prupe.4G125300_v2.0.a1 Prupe.4G125500_v2.0.a1 Prupe.4G126400_v2.0.a1 Prupe.4G126600_v2.0.a1 Prupe.4G126600_v2.0.a1
pyrus_communis	pycom10g26190
rosa_chinensis	RchiOBHm_Chr1g0331201 RchiOBHm_Chr1g0331211 RchiOBHm_Chr5g0004591 RchiOBHm_Chr5g0004631 RchiOBHm_Chr5g0029171 RchiOBHm_Chr5g0029181 RchiOBHm_Chr5g0029221 RchiOBHm_Chr5g0029231
rosa_laevigata	RLG00000031243 RLG00000031247 RLG00000031248
rosa_multiflora	Rmu_sc0003758.1_g000015 Rmu_sc0005711.1_g000009 Rmu_sc0012347.1_g000002
rosa_roxburghii	Rroxscaffold_1G00070900 Rroxscaffold_1G00070960
rosa_rugosa	Rorug04G0412300 Rorug04G0412700 Rorug04G0412800 Rorug04G0412900 Rorug04G0413000
rosa_samantha	Rh1AG116200 Rh1DG120600 Rh5AG040400 Rh5BG039900 Rh5CG043700 Rh5CG044200 Rh5CG224800 Rh5DG039500 Rh5DG039600 Rh5DG040200
rosa_wichuraiana	Rw1G009340 Rw5G003880 Rw5G003920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	292
AclWI	GGATC	1 cut(s)	534
AfaI	GTAC	5 cut(s)	146, 321, 410, 443, 550
AgsI	TTSAA	3 cut(s)	8, 260, 437
AluBI	AGCT	4 cut(s)	131, 235, 254, 289
AluI	AGCT	4 cut(s)	131, 235, 254, 289
Alw21I	GWGCWC	1 cut(s)	511
Alw26I	GTCTC	2 cut(s)	68, 144
AlwI	GGATC	1 cut(s)	534
Aor13HI	TCCGGA	1 cut(s)	292
AoxI	GGCC	1 cut(s)	417
ApeKI	GCWGC	1 cut(s)	286
AsuHPI	GGTGA	1 cut(s)	238
Bbv12I	GWGCWC	1 cut(s)	511
BbvI	GCAGC	1 cut(s)	298
BceAI	ACGGC	1 cut(s)	188
BcoDI	GTCTC	2 cut(s)	68, 144
BfaI	CTAG	1 cut(s)	504
BglII	AGATCT	2 cut(s)	25, 306
BisI	GCNGC	1 cut(s)	287
BlsI	GCNGC	1 cut(s)	288
BmcAI	AGTACT	1 cut(s)	321
BmiI	GGNNCC	1 cut(s)	377
BmsI	GCATC	1 cut(s)	190
BsaBI	GATNNNNATC	1 cut(s)	191
BsaI	GGTCTC	1 cut(s)	68
BsaWI	WCCGGW	1 cut(s)	292
Bse3DI	GCAATG	1 cut(s)	457
Bse8I	GATNNNNATC	1 cut(s)	191
BseAI	TCCGGA	1 cut(s)	292
BseGI	GGATG	1 cut(s)	274
BseJI	GATNNNNATC	1 cut(s)	191
BseMI	GCAATG	1 cut(s)	457
BseMII	CTCAG	2 cut(s)	155, 273
BseRI	GAGGAG	2 cut(s)	374, 377
BseXI	GCAGC	1 cut(s)	298
BshFI	GGCC	1 cut(s)	419
BsiHKAI	GWGCWC	1 cut(s)	511
BsiSI	CCGG	1 cut(s)	293
BsmAI	GTCTC	2 cut(s)	68, 144
BsmI	GAATGC	1 cut(s)	494
BsnI	GGCC	1 cut(s)	419
Bso31I	GGTCTC	1 cut(s)	68
Bsp1286I	GDGCHC	1 cut(s)	511
Bsp13I	TCCGGA	1 cut(s)	292
Bsp143I	GATC	3 cut(s)	25, 306, 526
BspANI	GGCC	1 cut(s)	419
BspCNI	CTCAG	2 cut(s)	154, 274
BspEI	TCCGGA	1 cut(s)	292
BspLI	GGNNCC	1 cut(s)	377
BspPI	GGATC	1 cut(s)	534
BspQI	GCTCTTC	1 cut(s)	225
BspTNI	GGTCTC	1 cut(s)	68
BsrDI	GCAATG	1 cut(s)	457
BssMI	GATC	3 cut(s)	25, 306, 526
Bst4CI	ACNGT	1 cut(s)	429
Bst6I	CTCTTC	2 cut(s)	225, 432
BstDEI	CTNAG	5 cut(s)	29, 42, 141, 282, 530
BstF5I	GGATG	1 cut(s)	274
BstKTI	GATC	3 cut(s)	28, 309, 529
BstMAI	GTCTC	2 cut(s)	68, 144
BstMBI	GATC	3 cut(s)	25, 306, 526
BstMWI	GCNNNNNNNGC	1 cut(s)	500
BstV1I	GCAGC	1 cut(s)	298
BstX2I	RGATCY	3 cut(s)	25, 306, 526
BstXI	CCANNNNNNTGG	1 cut(s)	452
BstYI	RGATCY	3 cut(s)	25, 306, 526
BsuRI	GGCC	1 cut(s)	419
BtsCI	GGATG	1 cut(s)	274
Csp6I	GTAC	5 cut(s)	145, 320, 409, 442, 549
CviAII	CATG	2 cut(s)	112, 491
CviJI	RGCY	8 cut(s)	11, 131, 222, 235, 254, 289, 419, 473
CviKI_1	RGCY	8 cut(s)	11, 131, 222, 235, 254, 289, 419, 473
CviQI	GTAC	5 cut(s)	145, 320, 409, 442, 549
DdeI	CTNAG	5 cut(s)	29, 42, 141, 282, 530
DpnI	GATC	3 cut(s)	27, 308, 528
DpnII	GATC	3 cut(s)	25, 306, 526
Eam1104I	CTCTTC	2 cut(s)	225, 432
EarI	CTCTTC	2 cut(s)	225, 432
Eco147I	AGGCCT	1 cut(s)	419
Eco31I	GGTCTC	1 cut(s)	68
EcoT22I	ATGCAT	1 cut(s)	496
FaeI	CATG	2 cut(s)	115, 494
FaiI	YATR	9 cut(s)	113, 122, 197, 210, 219, 302, 447, 492, 513
FatI	CATG	2 cut(s)	111, 490
Fnu4HI	GCNGC	1 cut(s)	287
FokI	GGATG	1 cut(s)	281
Fsp4HI	GCNGC	1 cut(s)	287
FspBI	CTAG	1 cut(s)	504
GluI	GCNGC	1 cut(s)	287
HaeIII	GGCC	1 cut(s)	419
HapII	CCGG	1 cut(s)	293
Hin1II	CATG	2 cut(s)	115, 494
HinfI	GANTC	2 cut(s)	35, 137
HpaII	CCGG	1 cut(s)	293
HphI	GGTGA	1 cut(s)	238
Hpy188I	TCNGA	2 cut(s)	375, 561
Hpy188III	TCNNGA	1 cut(s)	293
HpyCH4III	ACNGT	1 cut(s)	429
HpyCH4IV	ACGT	1 cut(s)	580
HpyCH4V	TGCA	2 cut(s)	86, 494
HpyF10VI	GCNNNNNNNGC	1 cut(s)	500
HpyF3I	CTNAG	5 cut(s)	29, 42, 141, 282, 530
HpySE526I	ACGT	1 cut(s)	580
Hsp92II	CATG	2 cut(s)	115, 494
Kpn2I	TCCGGA	1 cut(s)	292
Kzo9I	GATC	3 cut(s)	25, 306, 526
LguI	GCTCTTC	1 cut(s)	225
LpnPI	CCDG	2 cut(s)	44, 306
Lsp1109I	GCAGC	1 cut(s)	298
LweI	GCATC	1 cut(s)	190
MaeI	CTAG	1 cut(s)	504
MaeII	ACGT	1 cut(s)	580
MalI	GATC	3 cut(s)	27, 308, 528
MboI	GATC	3 cut(s)	25, 306, 526
MboII	GAAGA	4 cut(s)	242, 316, 449, 490
MflI	RGATCY	3 cut(s)	25, 306, 526
MhlI	GDGCHC	1 cut(s)	511
MluCI	AATT	1 cut(s)	181
MlyI	GAGTC	1 cut(s)	146
MmeI	TCCRAC	3 cut(s)	207, 353, 437
MnlI	CCTC	2 cut(s)	352, 355
Mph1103I	ATGCAT	1 cut(s)	496
MroI	TCCGGA	1 cut(s)	292
MseI	TTAA	1 cut(s)	598
MslI	CAYNNNNRTG	2 cut(s)	43, 450
MspI	CCGG	1 cut(s)	293
Mva1269I	GAATGC	1 cut(s)	494
MwoI	GCNNNNNNNGC	1 cut(s)	500
NdeII	GATC	3 cut(s)	25, 306, 526
NlaIII	CATG	2 cut(s)	115, 494
NlaIV	GGNNCC	1 cut(s)	377
NsiI	ATGCAT	1 cut(s)	496
PceI	AGGCCT	1 cut(s)	419
PciSI	GCTCTTC	1 cut(s)	225
PctI	GAATGC	1 cut(s)	494
PfeI	GAWTC	1 cut(s)	35
PkrI	GCNGC	1 cut(s)	288
PleI	GAGTC	1 cut(s)	145
PpsI	GAGTC	1 cut(s)	145
PspN4I	GGNNCC	1 cut(s)	377
PsuI	RGATCY	3 cut(s)	25, 306, 526
RsaI	GTAC	5 cut(s)	146, 321, 410, 443, 550
RsaNI	GTAC	5 cut(s)	145, 320, 409, 442, 549
RseI	CAYNNNNRTG	2 cut(s)	43, 450
SapI	GCTCTTC	1 cut(s)	225
SaqAI	TTAA	1 cut(s)	598
SatI	GCNGC	1 cut(s)	287
Sau3AI	GATC	3 cut(s)	25, 306, 526
ScaI	AGTACT	1 cut(s)	321
SchI	GAGTC	1 cut(s)	146
SduI	GDGCHC	1 cut(s)	511
SetI	ASST	7 cut(s)	133, 237, 256, 266, 291, 373, 583
SfaNI	GCATC	1 cut(s)	190
SmiMI	CAYNNNNRTG	2 cut(s)	43, 450
Sse9I	AATT	1 cut(s)	181
SseBI	AGGCCT	1 cut(s)	419
SspMI	CTAG	1 cut(s)	504
StuI	AGGCCT	1 cut(s)	419
TaaI	ACNGT	1 cut(s)	429
TaiI	ACGT	1 cut(s)	583
TasI	AATT	1 cut(s)	181
TatI	WGTACW	2 cut(s)	144, 319
TfiI	GAWTC	1 cut(s)	35
Tru1I	TTAA	1 cut(s)	598
Tru9I	TTAA	1 cut(s)	598
TseI	GCWGC	1 cut(s)	286
TspDTI	ATGAA	3 cut(s)	100, 317, 453
XspI	CTAG	1 cut(s)	504
ZrmI	AGTACT	1 cut(s)	321
Zsp2I	ATGCAT	1 cut(s)	496

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.