Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002039

Physical Location & Seq

Genomic Coordinates Forward (+)

57481859 .. 57483391

Gene Structure 1533 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0412900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGAGGCTCTACAATGGCTTCCTTGACATTCTGAAGATACAGAAGTTTCGGAGAATCGTGTCATATACTGGGTTCTACTGCTTCACAGCGGTCTTGAGCTACGCTTACACAAGCAACACAACTAGAGCTGGGTTTTCCAGAGGTGACCAATTCTATGCGTCGTACCCAGCTGGAACTGAGCTCCTGACAGACCAAGCTAAGTTGTATAAAGCTGCCCTTGGTAATTGCTTTGAAACCGAAGAATGGGGTCCGATTGAGTATTGCATCATGGCTAAACACTTTGAGCGGCAGGGGAAAGGGCCTTACGCGTACCACGCTCAATACATGGCACATCTTCTATCTCTTGGGCAACTTGATGGAAGTGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006720 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009987 GO:0010333 GO:0010334 GO:0016829 GO:0016835 GO:0016838 GO:0042214 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0046246 GO:0051761 GO:0051762 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00909 ko01110 map00909 map01110

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

122

Amino Acids

13.88

Weight (kDa)

8.4

Isoelectric Point (pI)

33.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002039)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g03000
malus_domestica	MD10G1311000.v1.1
prunus_persica	Prupe.4G029900_v2.0.a1 Prupe.4G125200_v2.0.a1 Prupe.4G125300_v2.0.a1 Prupe.4G125300_v2.0.a1 Prupe.4G125500_v2.0.a1 Prupe.4G126400_v2.0.a1 Prupe.4G126600_v2.0.a1 Prupe.4G126600_v2.0.a1
pyrus_communis	pycom10g26190
rosa_chinensis	RchiOBHm_Chr1g0331201 RchiOBHm_Chr1g0331211 RchiOBHm_Chr5g0004591 RchiOBHm_Chr5g0004631 RchiOBHm_Chr5g0029171 RchiOBHm_Chr5g0029181 RchiOBHm_Chr5g0029221 RchiOBHm_Chr5g0029231
rosa_laevigata	RLG00000031243 RLG00000031247 RLG00000031248
rosa_multiflora	Rmu_sc0003758.1_g000015 Rmu_sc0005711.1_g000009 Rmu_sc0012347.1_g000002
rosa_roxburghii	Rroxscaffold_1G00070900 Rroxscaffold_1G00070960
rosa_rugosa	Rorug04G0412300 Rorug04G0412700 Rorug04G0412800 Rorug04G0412900 Rorug04G0413000
rosa_samantha	Rh1AG116200 Rh1DG120600 Rh5AG040400 Rh5BG039900 Rh5CG043700 Rh5CG044200 Rh5CG224800 Rh5DG039500 Rh5DG039600 Rh5DG040200
rosa_wichuraiana	Rw1G009340 Rw5G003880 Rw5G003920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	286
AccII	CGCG	1 cut(s)	308
AciI	CCGC	2 cut(s)	89, 286
AcuI	CTGAAG	1 cut(s)	53
AfaI	GTAC	2 cut(s)	164, 311
AfiI	CCNNNNNNNGG	1 cut(s)	243
AflIII	ACRYGT	1 cut(s)	306
AgsI	TTSAA	1 cut(s)	233
AluBI	AGCT	6 cut(s)	99, 128, 170, 181, 197, 212
AluI	AGCT	6 cut(s)	99, 128, 170, 181, 197, 212
Alw21I	GWGCWC	1 cut(s)	183
AoxI	GGCC	1 cut(s)	299
ApeKI	GCWGC	1 cut(s)	212
AspS9I	GGNCC	2 cut(s)	248, 299
AsuHPI	GGTGA	1 cut(s)	155
AvaII	GGWCC	1 cut(s)	248
BaeI	ACNNNNGTAYC	2 cut(s)	29, 62
BanII	GRGCYC	1 cut(s)	183
Bbv12I	GWGCWC	1 cut(s)	183
BbvI	GCAGC	1 cut(s)	199
BccI	CCATC	1 cut(s)	350
BfaI	CTAG	2 cut(s)	123, 367
BisI	GCNGC	2 cut(s)	213, 287
BlsI	GCNGC	2 cut(s)	214, 288
Bme18I	GGWCC	1 cut(s)	248
BmgT120I	GGNCC	2 cut(s)	248, 299
BmiI	GGNNCC	1 cut(s)	249
BmrI	ACTGGG	1 cut(s)	78
BmsI	GCATC	1 cut(s)	273
BmuI	ACTGGG	1 cut(s)	78
BpuEI	CTTGAG	1 cut(s)	115
BsaJI	CCNNGG	1 cut(s)	217
Bsc4I	CCNNNNNNNGG	1 cut(s)	243
Bse1I	ACTGG	1 cut(s)	73
BseDI	CCNNGG	1 cut(s)	217
BseLI	CCNNNNNNNGG	1 cut(s)	243
BseMII	CTCAG	1 cut(s)	168
BseNI	ACTGG	1 cut(s)	73
BseXI	GCAGC	1 cut(s)	199
BseYI	CCCAGC	2 cut(s)	128, 166
Bsh1236I	CGCG	1 cut(s)	308
BshFI	GGCC	1 cut(s)	301
BsiHKAI	GWGCWC	1 cut(s)	183
BslI	CCNNNNNNNGG	1 cut(s)	243
BsnI	GGCC	1 cut(s)	301
Bsp1286I	GDGCHC	1 cut(s)	183
BspACI	CCGC	2 cut(s)	89, 286
BspANI	GGCC	1 cut(s)	301
BspCNI	CTCAG	1 cut(s)	169
BspFNI	CGCG	1 cut(s)	308
BspLI	GGNNCC	1 cut(s)	249
BsrBI	CCGCTC	1 cut(s)	286
BsrI	ACTGG	1 cut(s)	73
BssECI	CCNNGG	1 cut(s)	217
BssT1I	CCWWGG	1 cut(s)	217
BstDEI	CTNAG	2 cut(s)	177, 198
BstEII	GGTNACC	1 cut(s)	143
BstFNI	CGCG	1 cut(s)	308
BstMWI	GCNNNNNNNGC	1 cut(s)	314
BstPI	GGTNACC	1 cut(s)	143
BstUI	CGCG	1 cut(s)	308
BstV1I	GCAGC	1 cut(s)	199
BsuRI	GGCC	1 cut(s)	301
Cfr13I	GGNCC	2 cut(s)	248, 299
CseI	GACGC	1 cut(s)	147
Csp6I	GTAC	2 cut(s)	163, 310
CviAII	CATG	2 cut(s)	268, 325
CviQI	GTAC	2 cut(s)	163, 310
DdeI	CTNAG	2 cut(s)	177, 198
Ecl136II	GAGCTC	1 cut(s)	181
Eco130I	CCWWGG	1 cut(s)	217
Eco24I	GRGCYC	1 cut(s)	183
Eco47I	GGWCC	1 cut(s)	248
Eco53kI	GAGCTC	1 cut(s)	181
Eco57I	CTGAAG	1 cut(s)	53
Eco91I	GGTNACC	1 cut(s)	143
EcoICRI	GAGCTC	1 cut(s)	181
EcoO109I	RGGNCCY	1 cut(s)	299
EcoO65I	GGTNACC	1 cut(s)	143
EcoT14I	CCWWGG	1 cut(s)	217
EcoT38I	GRGCYC	1 cut(s)	183
ErhI	CCWWGG	1 cut(s)	217
FaeI	CATG	2 cut(s)	271, 328
FaiI	YATR	6 cut(s)	64, 66, 156, 207, 269, 326
FalI	AAGNNNNNCTT	2 cut(s)	201, 233
FatI	CATG	2 cut(s)	267, 324
Fnu4HI	GCNGC	2 cut(s)	213, 287
FriOI	GRGCYC	1 cut(s)	183
Fsp4HI	GCNGC	2 cut(s)	213, 287
FspBI	CTAG	2 cut(s)	123, 367
GluI	GCNGC	2 cut(s)	213, 287
GsaI	CCCAGC	2 cut(s)	132, 170
HaeIII	GGCC	1 cut(s)	301
HgaI	GACGC	1 cut(s)	147
Hin1II	CATG	2 cut(s)	271, 328
HinfI	GANTC	1 cut(s)	54
HphI	GGTGA	1 cut(s)	155
Hpy188I	TCNGA	3 cut(s)	33, 51, 252
Hpy188III	TCNNGA	3 cut(s)	94, 138, 184
Hpy99I	CGWCG	1 cut(s)	163
HpyCH4V	TGCA	1 cut(s)	264
HpyF10VI	GCNNNNNNNGC	1 cut(s)	314
HpyF3I	CTNAG	2 cut(s)	177, 198
Hsp92II	CATG	2 cut(s)	271, 328
LmnI	GCTCC	1 cut(s)	186
LpnPI	CCDG	7 cut(s)	54, 114, 151, 156, 180, 197, 275
Lsp1109I	GCAGC	1 cut(s)	199
LweI	GCATC	1 cut(s)	273
MaeI	CTAG	2 cut(s)	123, 367
MaeIII	GTNAC	1 cut(s)	143
MbiI	CCGCTC	1 cut(s)	286
MboII	GAAGA	3 cut(s)	46, 251, 326
MhlI	GDGCHC	1 cut(s)	183
MluCI	AATT	2 cut(s)	149, 223
MluI	ACGCGT	1 cut(s)	306
MnlI	CCTC	1 cut(s)	134
MspA1I	CMGCKG	2 cut(s)	89, 170
MvnI	CGCG	1 cut(s)	308
MwoI	GCNNNNNNNGC	1 cut(s)	314
NlaIII	CATG	2 cut(s)	271, 328
NlaIV	GGNNCC	1 cut(s)	249
NmuCI	GTSAC	1 cut(s)	143
PfeI	GAWTC	1 cut(s)	54
PkrI	GCNGC	2 cut(s)	214, 288
Psp124BI	GAGCTC	1 cut(s)	183
PspEI	GGTNACC	1 cut(s)	143
PspFI	CCCAGC	2 cut(s)	128, 166
PspN4I	GGNNCC	1 cut(s)	249
PspPI	GGNCC	2 cut(s)	248, 299
PvuII	CAGCTG	1 cut(s)	170
RsaI	GTAC	2 cut(s)	164, 311
RsaNI	GTAC	2 cut(s)	163, 310
SacI	GAGCTC	1 cut(s)	183
SatI	GCNGC	2 cut(s)	213, 287
Sau96I	GGNCC	2 cut(s)	248, 299
SduI	GDGCHC	1 cut(s)	183
SetI	ASST	7 cut(s)	101, 130, 145, 172, 183, 199, 214
SfaNI	GCATC	1 cut(s)	273
SinI	GGWCC	1 cut(s)	248
SmlI	CTYRAG	1 cut(s)	94
SmoI	CTYRAG	1 cut(s)	94
Sse9I	AATT	2 cut(s)	149, 223
SsiI	CCGC	2 cut(s)	89, 286
SspMI	CTAG	2 cut(s)	123, 367
SstI	GAGCTC	1 cut(s)	183
StyI	CCWWGG	1 cut(s)	217
TasI	AATT	2 cut(s)	149, 223
TauI	GCSGC	1 cut(s)	289
TfiI	GAWTC	1 cut(s)	54
TseFI	GTSAC	1 cut(s)	143
TseI	GCWGC	1 cut(s)	212
Tsp45I	GTSAC	1 cut(s)	143
VpaK11BI	GGWCC	1 cut(s)	248
XspI	CTAG	2 cut(s)	123, 367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.