Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002039

Physical Location & Seq

Genomic Coordinates Forward (+)

22893511 .. 22895740

Gene Structure 2230 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30859

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGTTCAAGCCACACTCCAAAAAGATCTAAGGGAAGCATCTAAGTGGTGGAACAATCTGGGTCTCACAAAGAACTTGGACTTTGCAAGAGATAGAATGGTGGAATGTTTCATGTGTGCTATGGGATTAGCTTTTGAGTCTCAGTACAAGTCTTTTAGAAAATCGCTGACTCAAGTTATCAATTTGATACTTGTCATTGATGCCGTTTATGGCTCGTTGGAAGAGCTAAATCACTTCACCAAAGCTATTGAAAGGTGGGATGTTAGGGAAACTGAGCAGCTTCCGGAGTGTATGAAGATCTGTTTCCAAGTACTTTACAACACAACTTGTGAAACTGCTTACGAAATAGAGGAGGAGAAAGGTCGGAACCAAGTATTACATCATCTACGCAAAGTGTCCGACTTGCGAAGAAGACCAGACAAGAATATAAGGAACCGAAGAAGACCAGCAACCGAAGCGGCGACTGCGATCTGGGTCGGTCCGACTGCGATTTTTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATCTGGGTCTGTCTGCTACTCTGCTTCTTCTGCGATTTGTGCCGAAGCTCTCTCTCCATCTGAGTATTTTTTTTTTCTTTATATTTTTGGGGGTAAAAAGTCGGGATTACCCCCACGTATCCGATTTATTTACATTCTCATGTATCCGAATAGGATATGCAAGTATCCGATCCTTATCCAAATCAGGATACGTGTTTCCGGCCATTTCCGAGCTTTTCCGACGCGTTTCGTACCCGTTTCCCGTTTCGATACGGGATACGCGGGCATTTTCGCATTTCCGTGCATCCTAGGAATGGATGAATTTTTGCACAAGAATGAAGATCTCGTGTACAATATCTCTCTAATACTTCGACTCTTAAATGATCTGGGAACTTCTGTGGCCGAGCAAGAGAGAGGCGATGTTGCTTCATCAATCCTATGCTACATGAGAGAAGTGAATGCTTCAGAAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006720 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009987 GO:0010333 GO:0010334 GO:0016829 GO:0016835 GO:0016838 GO:0042214 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0046246 GO:0051761 GO:0051762 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00909 ko01110 map00909 map01110

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

337

Amino Acids

38.56

Weight (kDa)

8.47

Isoelectric Point (pI)

51.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Terpene_synth_C	PF03936	19 - 132	9.3e-36	Terpene synthase family, metal binding domain
Terpene_syn_C_2	PF19086	66 - 135	2.3e-09	Terpene synthase family 2, C-terminal metal binding
Terpene_synth_C	PF03936	287 - 337	1.4e-11	Terpene synthase family, metal binding domain
Terpene_syn_C_2	PF19086	291 - 337	1.3e-09	Terpene synthase family 2, C-terminal metal binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002039)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g03000
malus_domestica	MD10G1311000.v1.1
prunus_persica	Prupe.4G029900_v2.0.a1 Prupe.4G125200_v2.0.a1 Prupe.4G125300_v2.0.a1 Prupe.4G125300_v2.0.a1 Prupe.4G125500_v2.0.a1 Prupe.4G126400_v2.0.a1 Prupe.4G126600_v2.0.a1 Prupe.4G126600_v2.0.a1
pyrus_communis	pycom10g26190
rosa_chinensis	RchiOBHm_Chr1g0331201 RchiOBHm_Chr1g0331211 RchiOBHm_Chr5g0004591 RchiOBHm_Chr5g0004631 RchiOBHm_Chr5g0029171 RchiOBHm_Chr5g0029181 RchiOBHm_Chr5g0029221 RchiOBHm_Chr5g0029231
rosa_laevigata	RLG00000031243 RLG00000031247 RLG00000031248
rosa_multiflora	Rmu_sc0003758.1_g000015 Rmu_sc0005711.1_g000009 Rmu_sc0012347.1_g000002
rosa_roxburghii	Rroxscaffold_1G00070900 Rroxscaffold_1G00070960
rosa_rugosa	Rorug04G0412300 Rorug04G0412700 Rorug04G0412800 Rorug04G0412900 Rorug04G0413000
rosa_samantha	Rh1AG116200 Rh1DG120600 Rh5AG040400 Rh5BG039900 Rh5CG043700 Rh5CG044200 Rh5CG224800 Rh5DG039500 Rh5DG039600 Rh5DG040200
rosa_wichuraiana	Rw1G009340 Rw5G003880 Rw5G003920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	784, 821
AccIII	TCCGGA	1 cut(s)	283
AciI	CCGC	2 cut(s)	458, 821
AclWI	GGATC	1 cut(s)	724
AcoI	YGGCCR	2 cut(s)	760, 939
AcsI	RAATTY	1 cut(s)	860
AcuI	CTGAAG	1 cut(s)	987
AfaI	GTAC	4 cut(s)	146, 312, 792, 890
AfiI	CCNNNNNNNGG	1 cut(s)	853
AflIII	ACRYGT	2 cut(s)	751, 782
AgsI	TTSAA	2 cut(s)	8, 251
AluBI	AGCT	6 cut(s)	131, 226, 245, 280, 608, 773
AluI	AGCT	6 cut(s)	131, 226, 245, 280, 608, 773
Alw26I	GTCTC	2 cut(s)	68, 144
AlwI	GGATC	1 cut(s)	724
Aor13HI	TCCGGA	1 cut(s)	283
AoxI	GGCC	2 cut(s)	760, 939
ApeKI	GCWGC	1 cut(s)	277
ApoI	RAATTY	1 cut(s)	860
AspA2I	CCTAGG	1 cut(s)	847
AspS9I	GGNCC	1 cut(s)	479
AsuHPI	GGTGA	1 cut(s)	229
AvaII	GGWCC	1 cut(s)	479
AvrII	CCTAGG	1 cut(s)	847
BauI	CACGAG	1 cut(s)	884
BbsI	GAAGAC	2 cut(s)	418, 448
BbvI	GCAGC	1 cut(s)	289
BccI	CCATC	1 cut(s)	625
BceAI	ACGGC	1 cut(s)	188
BciVI	GTATCC	5 cut(s)	689, 714, 735, 741, 809
BcoDI	GTCTC	2 cut(s)	68, 144
BfaI	CTAG	1 cut(s)	848
BfuI	GTATCC	5 cut(s)	689, 714, 735, 741, 809
BglII	AGATCT	3 cut(s)	25, 297, 880
BisI	GCNGC	2 cut(s)	278, 459
BlnI	CCTAGG	1 cut(s)	847
BlsI	GCNGC	2 cut(s)	279, 460
BmcAI	AGTACT	1 cut(s)	312
Bme18I	GGWCC	1 cut(s)	479
BmgT120I	GGNCC	1 cut(s)	479
BmiI	GGNNCC	2 cut(s)	368, 434
BmsI	GCATC	3 cut(s)	47, 190, 852
BpiI	GAAGAC	2 cut(s)	418, 448
BpuEI	CTTGAG	1 cut(s)	156
BsaAI	YACGTR	2 cut(s)	677, 752
BsaBI	GATNNNNATC	1 cut(s)	734
BsaI	GGTCTC	1 cut(s)	68
BsaJI	CCNNGG	1 cut(s)	847
BsaWI	WCCGGW	1 cut(s)	283
Bsc4I	CCNNNNNNNGG	1 cut(s)	853
Bse8I	GATNNNNATC	1 cut(s)	734
BseAI	TCCGGA	1 cut(s)	283
BseDI	CCNNGG	1 cut(s)	847
BseGI	GGATG	3 cut(s)	265, 843, 862
BseJI	GATNNNNATC	1 cut(s)	734
BseLI	CCNNNNNNNGG	1 cut(s)	853
BseMII	CTCAG	3 cut(s)	155, 264, 612
BseRI	GAGGAG	2 cut(s)	365, 368
BseXI	GCAGC	1 cut(s)	289
Bsh1236I	CGCG	2 cut(s)	784, 821
BshFI	GGCC	2 cut(s)	762, 941
BsiSI	CCGG	2 cut(s)	284, 759
BslI	CCNNNNNNNGG	1 cut(s)	853
BsmAI	GTCTC	2 cut(s)	68, 144
BsmI	GAATGC	1 cut(s)	1003
BsnI	GGCC	2 cut(s)	762, 941
Bso31I	GGTCTC	1 cut(s)	68
Bsp13I	TCCGGA	1 cut(s)	283
Bsp1407I	TGTACA	1 cut(s)	888
Bsp143I	GATC	6 cut(s)	25, 297, 468, 729, 880, 922
BspACI	CCGC	2 cut(s)	458, 821
BspANI	GGCC	2 cut(s)	762, 941
BspCNI	CTCAG	3 cut(s)	154, 265, 613
BspEI	TCCGGA	1 cut(s)	283
BspFNI	CGCG	2 cut(s)	784, 821
BspLI	GGNNCC	2 cut(s)	368, 434
BspPI	GGATC	1 cut(s)	724
BspQI	GCTCTTC	1 cut(s)	216
BspTNI	GGTCTC	1 cut(s)	68
BsrGI	TGTACA	1 cut(s)	888
BssECI	CCNNGG	1 cut(s)	847
BssMI	GATC	6 cut(s)	25, 297, 468, 729, 880, 922
BssSI	CACGAG	1 cut(s)	884
BssT1I	CCWWGG	1 cut(s)	847
Bst2BI	CACGAG	1 cut(s)	884
Bst6I	CTCTTC	1 cut(s)	216
BstAUI	TGTACA	1 cut(s)	888
BstBAI	YACGTR	2 cut(s)	677, 752
BstC8I	GCNNGC	1 cut(s)	823
BstDEI	CTNAG	5 cut(s)	29, 42, 141, 273, 621
BstF5I	GGATG	3 cut(s)	265, 843, 862
BstFNI	CGCG	2 cut(s)	784, 821
BstKTI	GATC	6 cut(s)	28, 300, 471, 732, 883, 925
BstMAI	GTCTC	2 cut(s)	68, 144
BstMBI	GATC	6 cut(s)	25, 297, 468, 729, 880, 922
BstMWI	GCNNNNNNNGC	4 cut(s)	455, 464, 590, 599
BstUI	CGCG	2 cut(s)	784, 821
BstV1I	GCAGC	1 cut(s)	289
BstV2I	GAAGAC	2 cut(s)	418, 448
BstX2I	RGATCY	3 cut(s)	25, 297, 880
BstYI	RGATCY	3 cut(s)	25, 297, 880
BsuI	GTATCC	5 cut(s)	689, 714, 735, 741, 809
BsuRI	GGCC	2 cut(s)	762, 941
BtgZI	GCGATG	1 cut(s)	972
BtsCI	GGATG	3 cut(s)	265, 843, 862
Cac8I	GCNNGC	1 cut(s)	823
Cfr13I	GGNCC	1 cut(s)	479
CpoI	CGGWCCG	1 cut(s)	479
CseI	GACGC	1 cut(s)	790
Csp6I	GTAC	4 cut(s)	145, 311, 791, 889
CspI	CGGWCCG	1 cut(s)	479
CviAII	CATG	3 cut(s)	112, 700, 985
CviQI	GTAC	4 cut(s)	145, 311, 791, 889
DdeI	CTNAG	5 cut(s)	29, 42, 141, 273, 621
DpnI	GATC	6 cut(s)	27, 299, 470, 731, 882, 924
DpnII	GATC	6 cut(s)	25, 297, 468, 729, 880, 922
EaeI	YGGCCR	2 cut(s)	760, 939
Eam1104I	CTCTTC	1 cut(s)	216
EarI	CTCTTC	1 cut(s)	216
Eco130I	CCWWGG	1 cut(s)	847
Eco31I	GGTCTC	1 cut(s)	68
Eco47I	GGWCC	1 cut(s)	479
Eco57I	CTGAAG	1 cut(s)	987
EcoT14I	CCWWGG	1 cut(s)	847
ErhI	CCWWGG	1 cut(s)	847
FaeI	CATG	3 cut(s)	115, 703, 988
FatI	CATG	3 cut(s)	111, 699, 984
FauI	CCCGC	1 cut(s)	814
Fnu4HI	GCNGC	2 cut(s)	278, 459
FokI	GGATG	3 cut(s)	272, 830, 869
Fsp4HI	GCNGC	2 cut(s)	278, 459
FspBI	CTAG	1 cut(s)	848
GluI	GCNGC	2 cut(s)	278, 459
HaeIII	GGCC	2 cut(s)	762, 941
HapII	CCGG	2 cut(s)	284, 759
HgaI	GACGC	1 cut(s)	790
Hin1II	CATG	3 cut(s)	115, 703, 988
HinfI	GANTC	3 cut(s)	137, 169, 912
HpaII	CCGG	2 cut(s)	284, 759
HphI	GGTGA	1 cut(s)	229
Hpy166II	GTNNAC	1 cut(s)	889
Hpy188III	TCNNGA	3 cut(s)	284, 663, 745
Hpy8I	GTNNAC	1 cut(s)	889
Hpy99I	CGWCG	1 cut(s)	784
HpyCH4IV	ACGT	2 cut(s)	676, 751
HpyCH4V	TGCA	4 cut(s)	86, 720, 843, 868
HpyF10VI	GCNNNNNNNGC	4 cut(s)	455, 464, 590, 599
HpyF3I	CTNAG	5 cut(s)	29, 42, 141, 273, 621
HpySE526I	ACGT	2 cut(s)	676, 751
Hsp92II	CATG	3 cut(s)	115, 703, 988
Kpn2I	TCCGGA	1 cut(s)	283
Kzo9I	GATC	6 cut(s)	25, 297, 468, 729, 880, 922
LguI	GCTCTTC	1 cut(s)	216
LpnPI	CCDG	9 cut(s)	44, 297, 429, 457, 459, 549, 730, 772, 911
Lsp1109I	GCAGC	1 cut(s)	289
LweI	GCATC	3 cut(s)	47, 190, 852
MaeI	CTAG	1 cut(s)	848
MaeII	ACGT	2 cut(s)	676, 751
MalI	GATC	6 cut(s)	27, 299, 470, 731, 882, 924
MboI	GATC	6 cut(s)	25, 297, 468, 729, 880, 922
MboII	GAAGA	9 cut(s)	233, 307, 420, 423, 450, 453, 488, 579, 890
MflI	RGATCY	3 cut(s)	25, 297, 880
MluCI	AATT	2 cut(s)	181, 860
MluI	ACGCGT	1 cut(s)	782
MlyI	GAGTC	3 cut(s)	146, 163, 906
MmeI	TCCRAC	5 cut(s)	198, 344, 423, 506, 803
MnlI	CCTC	3 cut(s)	343, 346, 947
MroI	TCCGGA	1 cut(s)	283
MseI	TTAA	1 cut(s)	917
MslI	CAYNNNNRTG	4 cut(s)	43, 698, 838, 873
MspI	CCGG	2 cut(s)	284, 759
Mva1269I	GAATGC	1 cut(s)	1003
MvnI	CGCG	2 cut(s)	784, 821
MwoI	GCNNNNNNNGC	4 cut(s)	455, 464, 590, 599
NdeII	GATC	6 cut(s)	25, 297, 468, 729, 880, 922
NlaIII	CATG	3 cut(s)	115, 703, 988
NlaIV	GGNNCC	2 cut(s)	368, 434
NmeAIII	GCCGAG	1 cut(s)	967
PciSI	GCTCTTC	1 cut(s)	216
PctI	GAATGC	1 cut(s)	1003
PkrI	GCNGC	2 cut(s)	279, 460
PleI	GAGTC	3 cut(s)	145, 163, 906
PpsI	GAGTC	3 cut(s)	145, 163, 906
Ppu21I	YACGTR	2 cut(s)	677, 752
PspN4I	GGNNCC	2 cut(s)	368, 434
PspPI	GGNCC	1 cut(s)	479
PsuI	RGATCY	3 cut(s)	25, 297, 880
RsaI	GTAC	4 cut(s)	146, 312, 792, 890
RsaNI	GTAC	4 cut(s)	145, 311, 791, 889
RseI	CAYNNNNRTG	4 cut(s)	43, 698, 838, 873
Rsr2I	CGGWCCG	1 cut(s)	479
RsrII	CGGWCCG	1 cut(s)	479
SapI	GCTCTTC	1 cut(s)	216
SaqAI	TTAA	1 cut(s)	917
SatI	GCNGC	2 cut(s)	278, 459
Sau3AI	GATC	6 cut(s)	25, 297, 468, 729, 880, 922
Sau96I	GGNCC	1 cut(s)	479
ScaI	AGTACT	1 cut(s)	312
SchI	GAGTC	3 cut(s)	146, 163, 906
SfaNI	GCATC	3 cut(s)	47, 190, 852
SinI	GGWCC	1 cut(s)	479
SmiMI	CAYNNNNRTG	4 cut(s)	43, 698, 838, 873
SmlI	CTYRAG	1 cut(s)	171
SmoI	CTYRAG	1 cut(s)	171
Sse9I	AATT	2 cut(s)	181, 860
SsiI	CCGC	2 cut(s)	458, 821
SspMI	CTAG	1 cut(s)	848
StyI	CCWWGG	1 cut(s)	847
TaiI	ACGT	2 cut(s)	679, 754
TaqI	TCGA	2 cut(s)	807, 910
TaqII	GACCGA	1 cut(s)	467
TasI	AATT	2 cut(s)	181, 860
TatI	WGTACW	3 cut(s)	144, 310, 888
TauI	GCSGC	1 cut(s)	461
Tru1I	TTAA	1 cut(s)	917
Tru9I	TTAA	1 cut(s)	917
TseI	GCWGC	1 cut(s)	277
TspDTI	ATGAA	5 cut(s)	100, 308, 873, 891, 957
TspGWI	ACGGA	1 cut(s)	828
VpaK11BI	GGWCC	1 cut(s)	479
XapI	RAATTY	1 cut(s)	860
XmaJI	CCTAGG	1 cut(s)	847
XspI	CTAG	1 cut(s)	848
ZrmI	AGTACT	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.