Prupe.4G029900_v2.0.a1

(E,E)-alpha-farnesene

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Forward (+)
1390452 .. 1393161
2710 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G029900.1

Sequence Viewer

Length: 1728 bp
ATGGATTTTAGAACACACTTGCAAGCTGGTGAGCAGCAAATTCTTGAATGCCAGATGCAATCCCAAGCCTCTTACGACTTGACACAACACGAAAGACGATCTGCCAATTACAAGCCAAATATTTGGAAATATAGTTTCTTTGAATCCCTTGACAGCAAATACCATGAAGATGATTATAAAAGGCAATCTGAGAAGCTCATAGAAGATGTTAAGAATATGATATTTGTCGAAACTGAAAATTCAATAGCTCAGTTAGAGCTAGTTGACATCATCGCAAAACTAGGCCTCACAAACCACTTTGAAAAGGAAATCAAGGAAACCCTAGACACAATAGCATCTGTTGAAAATAACAGCCCCTGCATAAGCATAACAGATGACCTCTATACCACTGCCTTGTACTTTAAGATCCTTAGGCAGCAGGGCTACAAAGTATCACAAGATTTATTTCGTGGCTTCATGGATGAGGAGGGTACATTAAAGAAAAGCCATCTTTCGGATGTCAAAGGAATGCTTGAACTTTTTGAGGCATCGAACCTGGCTTTAGAAGGTGAAGATATCTTAGATGAGATAAAAGCTTCATCGAAGGTAGCTCTCAGAGATTCCAATATCTGTAATCTGGACAATAACCTTGCCAAGCATGTGGTCCATGCTTTGGAGCTTTCATCACACAGAAGAGTGCGGTGGTTCAATGTTAAAGGGCACATAGACGCCTATGAGAAAGACAATCACGTCAACACCATTTTACTTGAATTGGCTAAACTTAACTTTAACATGGTTCAAGCAAAACTGCAAAAAGATCTAAGGGAGGCATCCAAGTGGTGGAACAATCTGGGCCTCACACAGCACTTGAACTTTGCAAGAGATAGATTGGTCGAGTGTTTCATGTGTGCTGTGGGGTTAAATTTCCAGCCTGACTACACATCTTTTAGAATATGGCTTACTAAAGTCGTCAACCTGATTCTGATAATAGACGACGTTTACGACATTTATGGCTCATTGGAAGAGCTAAAGTGCTTCACCGACGCCGTTGACCGGTGGGATGTTGGGGAAACTGAGGCGCTTCCAGAGTGTATGAAGATCTGCTTCCAAGTGCTCTACAACACTACTTGTGAAATTGCTCATGAAATTGAGGAGGAAAATGGTTGGAATCAAGTGTTACCTCAGTTGAGGAAAGTGTGGGCAGATTTTTGTAAAGCATTATTAGTGGAGGCAGAATGGTACAGTAGGGCCTATACACCATCCCTGGAAGAGTACCTCAGTATTGGATGCATTTCATCATCAGTTTCAGTGCTTTTGGTCCATTCATTTTTCTCCACAACTCATCATCAGGGAATCCAAGAGATTGCTGATTTTCTGCACAAGAATGAAGATCTTGTGTATAATTTATCTCTGATAGTTCGGCTCAGCAATGATTTGGGAACTTCTGCAGCAGAACAAGAGCGAGGGGATGCTCCCTCAGCAATCCTATGTTACATGAGAGAGGTGAATGTTTGTGAAGATGTAGCTAAGAAGAACATCAAGGACATGATAGAGAATGCATGGAAGAAAATAAATGCAAAATGCTTGAGAACCCCACAAGTGCCTTCTCTGTCACCATTCATCAACATTACCACAAATATTGCTCGAGTGGCGCACAGCCTTTACCAAGATGGAGATGCGTTTGGTGATCAAGAGAAAGGAACTCGCATCCTGATTCAGTCTCTACTAGTTCAGCCTTTACTACTTTGA

Protein Analysis

576

Amino Acids

66.1

Weight (kDa)

5.1

Isoelectric Point (pI)

43.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 177
AasI GACNNNNNNGTC 1 cut(s) 728
AccB7I CCANNNNNTGG 2 cut(s) 652, 819
AciI CCGC 1 cut(s) 679
AclWI GGATC 1 cut(s) 400
AcsI RAATTY 3 cut(s) 39, 238, 901
AcyI GRCGYC 2 cut(s) 708, 1023
AfaI GTAC 4 cut(s) 398, 472, 1220, 1253
AfiI CCNNNNNNNGG 4 cut(s) 493, 652, 819, 1032
AgeI ACCGGT 1 cut(s) 1032
AhlI ACTAGT 1 cut(s) 1705
AjiI CACGTC 1 cut(s) 730
AjnI CCWGG 2 cut(s) 534, 1242
AluBI AGCT 9 cut(s) 26, 196, 248, 259, 575, 590, 658, 1006, 1505
AluI AGCT 9 cut(s) 26, 196, 248, 259, 575, 590, 658, 1006, 1505
Alw21I GWGCWC 1 cut(s) 1095
Alw26I GTCTC 1 cut(s) 1704
AlwI GGATC 1 cut(s) 400
AlwNI CAGNNNCTG 1 cut(s) 357
Ama87I CYCGRG 1 cut(s) 1623
AoxI GGCC 3 cut(s) 283, 832, 1227
ApeKI GCWGC 3 cut(s) 34, 415, 1427
ApoI RAATTY 3 cut(s) 39, 238, 901
AsiGI ACCGGT 1 cut(s) 1032
AspLEI GCGC 2 cut(s) 1060, 1633
AspS9I GGNCC 4 cut(s) 643, 832, 1227, 1297
AsuHPI GGTGA 6 cut(s) 41, 560, 1009, 1495, 1584, 1676
AvaI CYCGRG 1 cut(s) 1623
AvaII GGWCC 2 cut(s) 643, 1297
AxyI CCTNAGG 1 cut(s) 410
BaeGI GKGCMC 1 cut(s) 702
Bbv12I GWGCWC 1 cut(s) 1095
BbvCI CCTCAGC 1 cut(s) 1456
BbvI GCAGC 3 cut(s) 46, 427, 1439
BccI CCATC 3 cut(s) 495, 1246, 1643
BceAI ACGGC 1 cut(s) 1010
BciT130I CCWGG 2 cut(s) 536, 1244
BclI TGATCA 1 cut(s) 1666
BcoDI GTCTC 1 cut(s) 1704
BcuI ACTAGT 1 cut(s) 1705
BfaI CTAG 4 cut(s) 260, 281, 323, 1706
BfmI CTRYAG 1 cut(s) 1425
BfoI RGCGCY 1 cut(s) 1061
BglII AGATCT 3 cut(s) 796, 1077, 1369
BisI GCNGC 3 cut(s) 35, 416, 1428
BlpI GCTNAGC 1 cut(s) 1403
BlsI GCNGC 3 cut(s) 36, 417, 1429
Bme1390I CCNGG 2 cut(s) 536, 1244
Bme18I GGWCC 2 cut(s) 643, 1297
BmeT110I CYCGRG 1 cut(s) 1623
BmgBI CACGTC 1 cut(s) 730
BmgT120I GGNCC 4 cut(s) 643, 832, 1227, 1297
BmrFI CCNGG 2 cut(s) 536, 1244
BmsI GCATC 8 cut(s) 45, 344, 536, 818, 1256, 1438, 1645, 1695
Bpu10I CCTNAGC 1 cut(s) 1456
Bpu1102I GCTNAGC 1 cut(s) 1403
BpuEI CTTGAG 1 cut(s) 1585
BsaHI GRCGYC 2 cut(s) 708, 1023
BsaJI CCNNGG 1 cut(s) 1242
BsaWI WCCGGW 1 cut(s) 1032
Bsc4I CCNNNNNNNGG 4 cut(s) 493, 652, 819, 1032
Bse118I RCCGGY 1 cut(s) 1032
Bse21I CCTNAGG 1 cut(s) 410
Bse3DI GCAATG 1 cut(s) 1414
BseBI CCWGG 2 cut(s) 536, 1244
BseDI CCNNGG 1 cut(s) 1242
BseGI GGATG 8 cut(s) 466, 502, 809, 1045, 1238, 1271, 1453, 1686
BseLI CCNNNNNNNGG 4 cut(s) 493, 652, 819, 1032
BseMI GCAATG 1 cut(s) 1414
BseMII CTCAG 8 cut(s) 180, 263, 607, 1044, 1175, 1270, 1417, 1470
BseRI GAGGAG 2 cut(s) 479, 1145
BseSI GKGCMC 1 cut(s) 702
BseXI GCAGC 3 cut(s) 46, 427, 1439
BsgI GTGCAG 1 cut(s) 1340
BshFI GGCC 3 cut(s) 285, 834, 1229
BshTI ACCGGT 1 cut(s) 1032
BsiHKAI GWGCWC 1 cut(s) 1095
BsiHKCI CYCGRG 1 cut(s) 1623
BsiSI CCGG 1 cut(s) 1033
BslI CCNNNNNNNGG 4 cut(s) 493, 652, 819, 1032
BsmAI GTCTC 1 cut(s) 1704
BsmI GAATGC 3 cut(s) 53, 513, 1540
BsnI GGCC 3 cut(s) 285, 834, 1229
BsoBI CYCGRG 1 cut(s) 1623
Bsp1286I GDGCHC 2 cut(s) 702, 1095
Bsp143I GATC 6 cut(s) 98, 405, 796, 1077, 1369, 1666
Bsp1720I GCTNAGC 1 cut(s) 1403
BspACI CCGC 1 cut(s) 679
BspANI GGCC 3 cut(s) 285, 834, 1229
BspCNI CTCAG 8 cut(s) 181, 262, 606, 1045, 1174, 1269, 1416, 1469
BspHI TCATGA 1 cut(s) 1120
BspMAI CTGCAG 1 cut(s) 1429
BspPI GGATC 1 cut(s) 400
BspQI GCTCTTC 1 cut(s) 996
BsrDI GCAATG 1 cut(s) 1414
BsrFI RCCGGY 1 cut(s) 1032
BssAI RCCGGY 1 cut(s) 1032
BssECI CCNNGG 1 cut(s) 1242
BssMI GATC 6 cut(s) 98, 405, 796, 1077, 1369, 1666
BssNI GRCGYC 2 cut(s) 708, 1023
Bst2UI CCWGG 2 cut(s) 536, 1244
Bst4CI ACNGT 1 cut(s) 1223
Bst6I CTCTTC 3 cut(s) 667, 996, 1242
BstACI GRCGYC 2 cut(s) 708, 1023
BstC8I GCNNGC 1 cut(s) 24
BstF5I GGATG 8 cut(s) 466, 502, 809, 1045, 1238, 1271, 1453, 1686
BstH2I RGCGCY 1 cut(s) 1061
BstHHI GCGC 2 cut(s) 1060, 1633
BstKTI GATC 6 cut(s) 101, 408, 799, 1080, 1372, 1669
BstMAI GTCTC 1 cut(s) 1704
BstMBI GATC 6 cut(s) 98, 405, 796, 1077, 1369, 1666
BstMWI GCNNNNNNNGC 2 cut(s) 1457, 1628
BstNI CCWGG 2 cut(s) 536, 1244
BstNSI RCATGY 1 cut(s) 641
BstSCI CCNGG 2 cut(s) 534, 1242
BstSFI CTRYAG 1 cut(s) 1425
BstSLI GKGCMC 1 cut(s) 702
BstV1I GCAGC 3 cut(s) 46, 427, 1439
BstX2I RGATCY 4 cut(s) 405, 796, 1077, 1369
BstXI CCANNNNNNTGG 2 cut(s) 123, 640
BstYI RGATCY 4 cut(s) 405, 796, 1077, 1369
Bsu36I CCTNAGG 1 cut(s) 410
BsuRI GGCC 3 cut(s) 285, 834, 1229
BtgZI GCGATG 1 cut(s) 256
BtrI CACGTC 1 cut(s) 730
BtsCI GGATG 8 cut(s) 466, 502, 809, 1045, 1238, 1271, 1453, 1686
BtsI GCAGTG 1 cut(s) 387
BtsIMutI CAGTG 2 cut(s) 387, 1293
Cac8I GCNNGC 1 cut(s) 24
CaiI CAGNNNCTG 1 cut(s) 357
CciI TCATGA 1 cut(s) 1120
CfoI GCGC 2 cut(s) 1060, 1633
Cfr10I RCCGGY 1 cut(s) 1032
Cfr13I GGNCC 4 cut(s) 643, 832, 1227, 1297
CseI GACGC 2 cut(s) 716, 1031
Csp6I GTAC 4 cut(s) 397, 471, 1219, 1252
CspAI ACCGGT 1 cut(s) 1032
CspCI CAANNNNNGTGG 2 cut(s) 1600, 1635
CviQI GTAC 4 cut(s) 397, 471, 1219, 1252
DpnI GATC 6 cut(s) 100, 407, 798, 1079, 1371, 1668
DpnII GATC 6 cut(s) 98, 405, 796, 1077, 1369, 1666
DrdI GACNNNNNNGTC 1 cut(s) 728
DseDI GACNNNNNNGTC 1 cut(s) 728
Eam1104I CTCTTC 3 cut(s) 667, 996, 1242
EarI CTCTTC 3 cut(s) 667, 996, 1242
Eco147I AGGCCT 1 cut(s) 285
Eco32I GATATC 1 cut(s) 556
Eco47I GGWCC 2 cut(s) 643, 1297
Eco81I CCTNAGG 1 cut(s) 410
Eco88I CYCGRG 1 cut(s) 1623
EcoO109I RGGNCCY 1 cut(s) 1227
EcoRII CCWGG 2 cut(s) 534, 1242
EcoRV GATATC 1 cut(s) 556
EcoT22I ATGCAT 2 cut(s) 1271, 1540
FalI AAGNNNNNCTT 4 cut(s) 495, 527, 1067, 1099
FbaI TGATCA 1 cut(s) 1666
Fnu4HI GCNGC 3 cut(s) 35, 416, 1428
FokI GGATG 8 cut(s) 473, 509, 796, 1052, 1225, 1278, 1460, 1673
Fsp4HI GCNGC 3 cut(s) 35, 416, 1428
FspBI CTAG 4 cut(s) 260, 281, 323, 1706
GlaI GCGC 2 cut(s) 1059, 1632
GluI GCNGC 3 cut(s) 35, 416, 1428
HaeII RGCGCY 1 cut(s) 1061
HaeIII GGCC 3 cut(s) 285, 834, 1229
HapII CCGG 1 cut(s) 1033
HgaI GACGC 2 cut(s) 716, 1031
HhaI GCGC 2 cut(s) 1060, 1633
Hin1I GRCGYC 2 cut(s) 708, 1023
Hin6I GCGC 2 cut(s) 1058, 1631
HinP1I GCGC 2 cut(s) 1058, 1631
HincII GTYRAC 4 cut(s) 265, 733, 952, 1030
HindII GTYRAC 4 cut(s) 265, 733, 952, 1030
HindIII AAGCTT 1 cut(s) 573
HinfI GANTC 6 cut(s) 143, 599, 958, 1147, 1332, 1693
HpaII CCGG 1 cut(s) 1033
HphI GGTGA 6 cut(s) 41, 560, 1009, 1495, 1584, 1676
Hpy166II GTNNAC 5 cut(s) 265, 733, 952, 979, 1030
Hpy188I TCNGA 5 cut(s) 190, 496, 596, 963, 1392
Hpy188III TCNNGA 6 cut(s) 44, 617, 1064, 1121, 1670, 1690
Hpy8I GTNNAC 5 cut(s) 265, 733, 952, 979, 1030
Hpy99I CGWCG 2 cut(s) 977, 1025
HpyAV CCTTC 3 cut(s) 539, 577, 1593
HpyCH4III ACNGT 1 cut(s) 1223
HpyCH4IV ACGT 2 cut(s) 729, 975
HpyF10VI GCNNNNNNNGC 2 cut(s) 1457, 1628
HpySE526I ACGT 2 cut(s) 729, 975
Hsp92I GRCGYC 2 cut(s) 708, 1023
HspAI GCGC 2 cut(s) 1058, 1631
Ksp22I TGATCA 1 cut(s) 1666
Kzo9I GATC 6 cut(s) 98, 405, 796, 1077, 1369, 1666
LguI GCTCTTC 1 cut(s) 996
LmnI GCTCC 2 cut(s) 655, 1456
Lsp1109I GCAGC 3 cut(s) 46, 427, 1439
LweI GCATC 8 cut(s) 45, 344, 536, 818, 1256, 1438, 1645, 1695
MaeI CTAG 4 cut(s) 260, 281, 323, 1706
MaeII ACGT 2 cut(s) 729, 975
MaeIII GTNAC 3 cut(s) 1155, 1469, 1590
MalI GATC 6 cut(s) 100, 407, 798, 1079, 1371, 1668
MboI GATC 6 cut(s) 98, 405, 796, 1077, 1369, 1666
MflI RGATCY 4 cut(s) 405, 796, 1077, 1369
MhlI GDGCHC 2 cut(s) 702, 1095
MluCI AATT 8 cut(s) 39, 106, 238, 749, 901, 1113, 1125, 1381
MmeI TCCRAC 1 cut(s) 1124
Mph1103I ATGCAT 2 cut(s) 1271, 1540
MseI TTAA 7 cut(s) 210, 402, 476, 693, 762, 768, 899
MslI CAYNNNNRTG 3 cut(s) 168, 814, 1362
MspI CCGG 1 cut(s) 1033
MspR9I CCNGG 2 cut(s) 536, 1244
Mva1269I GAATGC 3 cut(s) 53, 513, 1540
MvaI CCWGG 2 cut(s) 536, 1244
MwoI GCNNNNNNNGC 2 cut(s) 1457, 1628
NdeII GATC 6 cut(s) 98, 405, 796, 1077, 1369, 1666
NmuCI GTSAC 1 cut(s) 1590
NsiI ATGCAT 2 cut(s) 1271, 1540
NspI RCATGY 1 cut(s) 641
PaeR7I CTCGAG 1 cut(s) 1623
PagI TCATGA 1 cut(s) 1120
PceI AGGCCT 1 cut(s) 285
PciSI GCTCTTC 1 cut(s) 996
PcsI WCGNNNNNNNCGW 1 cut(s) 978
PctI GAATGC 3 cut(s) 53, 513, 1540
PfeI GAWTC 6 cut(s) 143, 599, 958, 1147, 1332, 1693
PflMI CCANNNNNTGG 2 cut(s) 652, 819
PinAI ACCGGT 1 cut(s) 1032
PkrI GCNGC 3 cut(s) 36, 417, 1429
PsiI TTATAA 1 cut(s) 177
Psp6I CCWGG 2 cut(s) 534, 1242
PspGI CCWGG 2 cut(s) 534, 1242
PspPI GGNCC 4 cut(s) 643, 832, 1227, 1297
PspXI VCTCGAGB 1 cut(s) 1623
PstI CTGCAG 1 cut(s) 1429
PstNI CAGNNNCTG 1 cut(s) 357
PsuI RGATCY 4 cut(s) 405, 796, 1077, 1369
RsaI GTAC 4 cut(s) 398, 472, 1220, 1253
RsaNI GTAC 4 cut(s) 397, 471, 1219, 1252
RseI CAYNNNNRTG 3 cut(s) 168, 814, 1362
SapI GCTCTTC 1 cut(s) 996
SaqAI TTAA 7 cut(s) 210, 402, 476, 693, 762, 768, 899
SatI GCNGC 3 cut(s) 35, 416, 1428
Sau3AI GATC 6 cut(s) 98, 405, 796, 1077, 1369, 1666
Sau96I GGNCC 4 cut(s) 643, 832, 1227, 1297
ScrFI CCNGG 2 cut(s) 536, 1244
SduI GDGCHC 2 cut(s) 702, 1095
SfaNI GCATC 8 cut(s) 45, 344, 536, 818, 1256, 1438, 1645, 1695
SfcI CTRYAG 1 cut(s) 1425
Sfr274I CTCGAG 1 cut(s) 1623
SinI GGWCC 2 cut(s) 643, 1297
SlaI CTCGAG 1 cut(s) 1623
SmiMI CAYNNNNRTG 3 cut(s) 168, 814, 1362
SmlI CTYRAG 2 cut(s) 1564, 1623
SmoI CTYRAG 2 cut(s) 1564, 1623
SpeI ACTAGT 1 cut(s) 1705
Sse9I AATT 8 cut(s) 39, 106, 238, 749, 901, 1113, 1125, 1381
SseBI AGGCCT 1 cut(s) 285
SsiI CCGC 1 cut(s) 679
SspI AATATT 2 cut(s) 121, 1618
SspMI CTAG 4 cut(s) 260, 281, 323, 1706
StuI AGGCCT 1 cut(s) 285
StyD4I CCNGG 2 cut(s) 534, 1242
TaaI ACNGT 1 cut(s) 1223
TaiI ACGT 2 cut(s) 732, 978
TaqI TCGA 5 cut(s) 228, 530, 581, 873, 1624
TasI AATT 8 cut(s) 39, 106, 238, 749, 901, 1113, 1125, 1381
TatI WGTACW 1 cut(s) 396
TfiI GAWTC 6 cut(s) 143, 599, 958, 1147, 1332, 1693
Tru1I TTAA 7 cut(s) 210, 402, 476, 693, 762, 768, 899
Tru9I TTAA 7 cut(s) 210, 402, 476, 693, 762, 768, 899
TscAI CASTG 2 cut(s) 394, 1293
TseFI GTSAC 1 cut(s) 1590
TseI GCWGC 3 cut(s) 34, 415, 1427
Tsp45I GTSAC 1 cut(s) 1590
TspRI CASTG 2 cut(s) 394, 1293
Van91I CCANNNNNTGG 2 cut(s) 652, 819
VpaK11BI GGWCC 2 cut(s) 643, 1297
XapI RAATTY 3 cut(s) 39, 238, 901
XceI RCATGY 1 cut(s) 641
XhoI CTCGAG 1 cut(s) 1623
XspI CTAG 4 cut(s) 260, 281, 323, 1706
Zsp2I ATGCAT 2 cut(s) 1271, 1540
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.