Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012347.1

Orthogroup ID

OG0002039

Physical Location & Seq

Genomic Coordinates Reverse (-)

11583 .. 16997

Gene Structure 5415 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012347.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

atggtgaggccgcggaggttcgggatcgccgatcaatcgaacggcgacgagaacgttggagttgctggagctccgactagagcttcttcgtcgtcttcagggtggtggaacaatctgggtctcacaaagaacttggactttgcaagagatagaatggtggaatgtttcatgtgtgctatgggattagcttttgagtctcagtacaagtcttttagaaaatcgctgactaaagttatcaatttgatacttatcatagatgccgtttatgatgtttatggctcgttggaagagctaaatcacttcaccaaacctgttgaaaggtgggatgttagggaaactgagcagcttccggagtgtatgaagatctgtttccaagtactttacaacacgacttgtgaaactgcttacgaaatagaggacgagaagggtcggaaccaagtattacatcatctatgcaaagtgtggatagatttttgtaaagcgttattggtagaggcagagtggtacaataaggcctacacaccgtcctttgaagagtaccatagcaatggttggatttcatcatctgcttcgctgattttcactcatgcattctttgccacagcacatgaggatagaatggatctaagaagcaccgaaacggaaaaggtccgacgaagcagcagaagaccagacgaagctgcaagaccagacgagcagcagaggaactccgagcagcaacaaaagaagactgggtctaggtctgcgaccaaccagcaaccgaagcggctgagattctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006720 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009987 GO:0010333 GO:0010334 GO:0016829 GO:0016835 GO:0016838 GO:0042214 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0046246 GO:0051761 GO:0051762 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00909 ko01110 map00909 map01110

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

259

Amino Acids

29.99

Weight (kDa)

6.61

Isoelectric Point (pI)

55.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002039)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g03000
malus_domestica	MD10G1311000.v1.1
prunus_persica	Prupe.4G029900_v2.0.a1 Prupe.4G125200_v2.0.a1 Prupe.4G125300_v2.0.a1 Prupe.4G125300_v2.0.a1 Prupe.4G125500_v2.0.a1 Prupe.4G126400_v2.0.a1 Prupe.4G126600_v2.0.a1 Prupe.4G126600_v2.0.a1
pyrus_communis	pycom10g26190
rosa_chinensis	RchiOBHm_Chr1g0331201 RchiOBHm_Chr1g0331211 RchiOBHm_Chr5g0004591 RchiOBHm_Chr5g0004631 RchiOBHm_Chr5g0029171 RchiOBHm_Chr5g0029181 RchiOBHm_Chr5g0029221 RchiOBHm_Chr5g0029231
rosa_laevigata	RLG00000031243 RLG00000031247 RLG00000031248
rosa_multiflora	Rmu_sc0003758.1_g000015 Rmu_sc0005711.1_g000009 Rmu_sc0012347.1_g000002
rosa_roxburghii	Rroxscaffold_1G00070900 Rroxscaffold_1G00070960
rosa_rugosa	Rorug04G0412300 Rorug04G0412700 Rorug04G0412800 Rorug04G0412900 Rorug04G0413000
rosa_samantha	Rh1AG116200 Rh1DG120600 Rh5AG040400 Rh5BG039900 Rh5CG043700 Rh5CG044200 Rh5CG224800 Rh5DG039500 Rh5DG039600 Rh5DG040200
rosa_wichuraiana	Rw1G009340 Rw5G003880 Rw5G003920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	13
AccIII	TCCGGA	1 cut(s)	349
AciI	CCGC	3 cut(s)	11, 13, 766
AclI	AACGTT	1 cut(s)	54
AclWI	GGATC	2 cut(s)	32, 630
AcuI	CTGAAG	1 cut(s)	81
AfaI	GTAC	4 cut(s)	203, 378, 506, 539
AgsI	TTSAA	2 cut(s)	317, 533
AluBI	AGCT	6 cut(s)	71, 83, 188, 292, 346, 680
AluI	AGCT	6 cut(s)	71, 83, 188, 292, 346, 680
Alw21I	GWGCWC	1 cut(s)	73
Alw26I	GTCTC	2 cut(s)	125, 201
AlwI	GGATC	2 cut(s)	32, 630
Aor13HI	TCCGGA	1 cut(s)	349
AoxI	GGCC	2 cut(s)	8, 513
ApeKI	GCWGC	5 cut(s)	343, 660, 680, 697, 715
AspS9I	GGNCC	1 cut(s)	649
AsuHPI	GGTGA	2 cut(s)	16, 295
AvaII	GGWCC	1 cut(s)	649
BanII	GRGCYC	1 cut(s)	73
BbsI	GAAGAC	3 cut(s)	87, 673, 734
Bbv12I	GWGCWC	1 cut(s)	73
BbvI	GCAGC	5 cut(s)	355, 667, 672, 709, 727
BceAI	ACGGC	2 cut(s)	58, 245
BcoDI	GTCTC	2 cut(s)	125, 201
BfaI	CTAG	2 cut(s)	78, 738
BglII	AGATCT	1 cut(s)	363
BisI	GCNGC	7 cut(s)	11, 344, 661, 681, 698, 716, 767
BlsI	GCNGC	7 cut(s)	12, 345, 662, 682, 699, 717, 768
BmcAI	AGTACT	1 cut(s)	378
Bme18I	GGWCC	1 cut(s)	649
BmgT120I	GGNCC	1 cut(s)	649
BmiI	GGNNCC	1 cut(s)	434
BmrI	ACTGGG	1 cut(s)	741
BmsI	GCATC	1 cut(s)	247
BmuI	ACTGGG	1 cut(s)	741
BpiI	GAAGAC	3 cut(s)	87, 673, 734
BpmI	CTGGAG	1 cut(s)	87
BsaBI	GATNNNNATC	1 cut(s)	248
BsaI	GGTCTC	1 cut(s)	125
BsaJI	CCNNGG	1 cut(s)	11
BsaWI	WCCGGW	1 cut(s)	349
Bse1I	ACTGG	1 cut(s)	736
Bse3DI	GCAATG	1 cut(s)	553
Bse8I	GATNNNNATC	1 cut(s)	248
BseAI	TCCGGA	1 cut(s)	349
BseDI	CCNNGG	1 cut(s)	11
BseGI	GGATG	1 cut(s)	331
BseJI	GATNNNNATC	1 cut(s)	248
BseMI	GCAATG	1 cut(s)	553
BseMII	CTCAG	3 cut(s)	212, 330, 761
BseNI	ACTGG	1 cut(s)	736
BseXI	GCAGC	5 cut(s)	355, 667, 672, 709, 727
Bsh1236I	CGCG	1 cut(s)	13
BshFI	GGCC	2 cut(s)	10, 515
BsiHKAI	GWGCWC	1 cut(s)	73
BsiSI	CCGG	1 cut(s)	350
BsmAI	GTCTC	2 cut(s)	125, 201
BsmI	GAATGC	1 cut(s)	590
BsnI	GGCC	2 cut(s)	10, 515
Bso31I	GGTCTC	1 cut(s)	125
Bsp1286I	GDGCHC	1 cut(s)	73
Bsp13I	TCCGGA	1 cut(s)	349
Bsp143I	GATC	4 cut(s)	24, 31, 363, 622
BspACI	CCGC	3 cut(s)	11, 13, 766
BspANI	GGCC	2 cut(s)	10, 515
BspCNI	CTCAG	3 cut(s)	211, 331, 762
BspEI	TCCGGA	1 cut(s)	349
BspFNI	CGCG	1 cut(s)	13
BspLI	GGNNCC	1 cut(s)	434
BspPI	GGATC	2 cut(s)	32, 630
BspQI	GCTCTTC	1 cut(s)	282
BspTNI	GGTCTC	1 cut(s)	125
BsrDI	GCAATG	1 cut(s)	553
BsrI	ACTGG	1 cut(s)	736
BssECI	CCNNGG	1 cut(s)	11
BssMI	GATC	4 cut(s)	24, 31, 363, 622
Bst4CI	ACNGT	1 cut(s)	525
Bst6I	CTCTTC	2 cut(s)	282, 528
BstAPI	GCANNNNNTGC	1 cut(s)	596
BstDEI	CTNAG	4 cut(s)	198, 339, 626, 770
BstDSI	CCRYGG	1 cut(s)	11
BstF5I	GGATG	1 cut(s)	331
BstFNI	CGCG	1 cut(s)	13
BstKTI	GATC	4 cut(s)	27, 34, 366, 625
BstMAI	GTCTC	2 cut(s)	125, 201
BstMBI	GATC	4 cut(s)	24, 31, 363, 622
BstMWI	GCNNNNNNNGC	2 cut(s)	596, 763
BstUI	CGCG	1 cut(s)	13
BstV1I	GCAGC	5 cut(s)	355, 667, 672, 709, 727
BstV2I	GAAGAC	3 cut(s)	87, 673, 734
BstX2I	RGATCY	2 cut(s)	363, 622
BstXI	CCANNNNNNTGG	1 cut(s)	548
BstYI	RGATCY	2 cut(s)	363, 622
BsuRI	GGCC	2 cut(s)	10, 515
BtgI	CCRYGG	1 cut(s)	11
BtsCI	GGATG	1 cut(s)	331
Cfr13I	GGNCC	1 cut(s)	649
Cfr42I	CCGCGG	1 cut(s)	14
Csp6I	GTAC	4 cut(s)	202, 377, 505, 538
CviAII	CATG	3 cut(s)	169, 587, 608
CviQI	GTAC	4 cut(s)	202, 377, 505, 538
DdeI	CTNAG	4 cut(s)	198, 339, 626, 770
DpnI	GATC	4 cut(s)	26, 33, 365, 624
DpnII	GATC	4 cut(s)	24, 31, 363, 622
Eam1104I	CTCTTC	2 cut(s)	282, 528
EarI	CTCTTC	2 cut(s)	282, 528
Ecl136II	GAGCTC	1 cut(s)	71
Eco147I	AGGCCT	1 cut(s)	515
Eco24I	GRGCYC	1 cut(s)	73
Eco31I	GGTCTC	1 cut(s)	125
Eco47I	GGWCC	1 cut(s)	649
Eco53kI	GAGCTC	1 cut(s)	71
Eco57I	CTGAAG	1 cut(s)	81
EcoICRI	GAGCTC	1 cut(s)	71
EcoT22I	ATGCAT	1 cut(s)	592
EcoT38I	GRGCYC	1 cut(s)	73
FaeI	CATG	3 cut(s)	172, 590, 611
FatI	CATG	3 cut(s)	168, 586, 607
Fnu4HI	GCNGC	7 cut(s)	11, 344, 661, 681, 698, 716, 767
FokI	GGATG	1 cut(s)	338
FriOI	GRGCYC	1 cut(s)	73
Fsp4HI	GCNGC	7 cut(s)	11, 344, 661, 681, 698, 716, 767
FspBI	CTAG	2 cut(s)	78, 738
GluI	GCNGC	7 cut(s)	11, 344, 661, 681, 698, 716, 767
GsuI	CTGGAG	1 cut(s)	87
HaeIII	GGCC	2 cut(s)	10, 515
HapII	CCGG	1 cut(s)	350
Hin1II	CATG	3 cut(s)	172, 590, 611
HinfI	GANTC	2 cut(s)	194, 774
HpaII	CCGG	1 cut(s)	350
HphI	GGTGA	2 cut(s)	16, 295
Hpy188I	TCNGA	4 cut(s)	75, 432, 653, 712
Hpy188III	TCNNGA	2 cut(s)	22, 350
Hpy99I	CGWCG	3 cut(s)	50, 94, 657
HpyAV	CCTTC	1 cut(s)	418
HpyCH4III	ACNGT	1 cut(s)	525
HpyCH4IV	ACGT	1 cut(s)	54
HpyCH4V	TGCA	4 cut(s)	143, 456, 590, 683
HpyF10VI	GCNNNNNNNGC	2 cut(s)	596, 763
HpyF3I	CTNAG	4 cut(s)	198, 339, 626, 770
HpySE526I	ACGT	1 cut(s)	54
Hsp92II	CATG	3 cut(s)	172, 590, 611
Kpn2I	TCCGGA	1 cut(s)	349
KspI	CCGCGG	1 cut(s)	14
Kzo9I	GATC	4 cut(s)	24, 31, 363, 622
LguI	GCTCTTC	1 cut(s)	282
LmnI	GCTCC	2 cut(s)	68, 76
LpnPI	CCDG	9 cut(s)	51, 84, 101, 324, 363, 684, 702, 717, 767
Lsp1109I	GCAGC	5 cut(s)	355, 667, 672, 709, 727
LweI	GCATC	1 cut(s)	247
MaeI	CTAG	2 cut(s)	78, 738
MaeII	ACGT	1 cut(s)	54
MalI	GATC	4 cut(s)	26, 33, 365, 624
MboI	GATC	4 cut(s)	24, 31, 363, 622
MboII	GAAGA	7 cut(s)	78, 87, 299, 373, 545, 678, 739
MflI	RGATCY	2 cut(s)	363, 622
MhlI	GDGCHC	1 cut(s)	73
MluCI	AATT	1 cut(s)	238
MlyI	GAGTC	1 cut(s)	203
MmeI	TCCRAC	6 cut(s)	37, 98, 264, 410, 533, 676
MnlI	CCTC	5 cut(s)	9, 409, 487, 604, 696
Mph1103I	ATGCAT	1 cut(s)	592
MroI	TCCGGA	1 cut(s)	349
MslI	CAYNNNNRTG	1 cut(s)	546
MspA1I	CMGCKG	1 cut(s)	13
MspI	CCGG	1 cut(s)	350
Mva1269I	GAATGC	1 cut(s)	590
MvnI	CGCG	1 cut(s)	13
MwoI	GCNNNNNNNGC	2 cut(s)	596, 763
NdeII	GATC	4 cut(s)	24, 31, 363, 622
NlaIII	CATG	3 cut(s)	172, 590, 611
NlaIV	GGNNCC	1 cut(s)	434
NsiI	ATGCAT	1 cut(s)	592
PceI	AGGCCT	1 cut(s)	515
PciSI	GCTCTTC	1 cut(s)	282
PcsI	WCGNNNNNNNCGW	1 cut(s)	27
PctI	GAATGC	1 cut(s)	590
PfeI	GAWTC	1 cut(s)	774
PflFI	GACNNNGTC	1 cut(s)	733
PkrI	GCNGC	7 cut(s)	12, 345, 662, 682, 699, 717, 768
PleI	GAGTC	1 cut(s)	202
PpsI	GAGTC	1 cut(s)	202
Psp124BI	GAGCTC	1 cut(s)	73
Psp1406I	AACGTT	1 cut(s)	54
PspN4I	GGNNCC	1 cut(s)	434
PspPI	GGNCC	1 cut(s)	649
PsuI	RGATCY	2 cut(s)	363, 622
PsyI	GACNNNGTC	1 cut(s)	733
RsaI	GTAC	4 cut(s)	203, 378, 506, 539
RsaNI	GTAC	4 cut(s)	202, 377, 505, 538
RseI	CAYNNNNRTG	1 cut(s)	546
SacI	GAGCTC	1 cut(s)	73
SacII	CCGCGG	1 cut(s)	14
SapI	GCTCTTC	1 cut(s)	282
SatI	GCNGC	7 cut(s)	11, 344, 661, 681, 698, 716, 767
Sau3AI	GATC	4 cut(s)	24, 31, 363, 622
Sau96I	GGNCC	1 cut(s)	649
ScaI	AGTACT	1 cut(s)	378
SchI	GAGTC	1 cut(s)	203
SduI	GDGCHC	1 cut(s)	73
SfaNI	GCATC	1 cut(s)	247
Sfr303I	CCGCGG	1 cut(s)	14
SgrBI	CCGCGG	1 cut(s)	14
SinI	GGWCC	1 cut(s)	649
SmiMI	CAYNNNNRTG	1 cut(s)	546
Sse9I	AATT	1 cut(s)	238
SseBI	AGGCCT	1 cut(s)	515
SsiI	CCGC	3 cut(s)	11, 13, 766
SspMI	CTAG	2 cut(s)	78, 738
SstI	GAGCTC	1 cut(s)	73
StuI	AGGCCT	1 cut(s)	515
TaaI	ACNGT	1 cut(s)	525
TaiI	ACGT	1 cut(s)	57
TaqI	TCGA	1 cut(s)	38
TasI	AATT	1 cut(s)	238
TatI	WGTACW	2 cut(s)	201, 376
TauI	GCSGC	2 cut(s)	13, 769
TfiI	GAWTC	1 cut(s)	774
TseI	GCWGC	5 cut(s)	343, 660, 680, 697, 715
TspDTI	ATGAA	3 cut(s)	157, 374, 549
TspGWI	ACGGA	1 cut(s)	656
Tth111I	GACNNNGTC	1 cut(s)	733
VpaK11BI	GGWCC	1 cut(s)	649
XspI	CTAG	2 cut(s)	78, 738
ZrmI	AGTACT	1 cut(s)	378
Zsp2I	ATGCAT	1 cut(s)	592

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.